BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4242.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776764.1| TetR family transcription regulator protein ... 324 4e-87 ref|YP_002974894.1| TetR family transcriptional regulator [Rhizo... 198 3e-49 ref|YP_002362435.1| TetR family transcriptional regulator [Methy... 198 4e-49 ref|YP_002422170.1| TetR family transcriptional regulator [Methy... 189 1e-46 ref|YP_001925981.1| TetR family transcriptional regulator [Methy... 189 2e-46 >ref|YP_003776764.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64856.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 172/185 (92%), Positives = 179/185 (96%) Query: 1 MARVIAEKDDVIPLLAEVFRTYGFEGASLARISEGTRLGKGSIYHFFPGGKEEMAQAVLG 60 MARVIAEK+DVIPLLAEVFRTYGFEGASLARISEGT+LG+GSIYHFFPGGKEEMAQAVLG Sbjct: 1 MARVIAEKEDVIPLLAEVFRTYGFEGASLARISEGTKLGRGSIYHFFPGGKEEMAQAVLG 60 Query: 61 HVDAWFRQHVFEALNERDDAVAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMV 120 HVDAWFR+HVFE+L E +DA AGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMV Sbjct: 61 HVDAWFRRHVFESLAEHEDAEAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMV 120 Query: 121 RDYFIAWIDALASALVRTGRKPKEARTLAEEVVGGIQGALVLARALDSTDVFADALKRFQ 180 RDYF AWIDALASALVRTGRKPKEAR LAEEVVGGIQGALVLARALD TDVFADA+KRFQ Sbjct: 121 RDYFTAWIDALASALVRTGRKPKEARMLAEEVVGGIQGALVLARALDQTDVFADAMKRFQ 180 Query: 181 KRLLG 185 KRLLG Sbjct: 181 KRLLG 185 >ref|YP_002974894.1| TetR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS55355.1| transcriptional regulator, TetR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 186 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 104/181 (57%), Positives = 132/181 (72%), Gaps = 1/181 (0%) Query: 3 RVIAEKDDVIPLLAEVFRTYGFEGASLARISEGTRLGKGSIYHFFPGGKEEMAQAVLGHV 62 + + E+ D++PLLAE+FR G+EG SL+RI+E T +GKGS+YHFFPGGKEEMA AVL V Sbjct: 2 KTVYERADIVPLLAEIFRELGYEGTSLSRITERTGIGKGSLYHFFPGGKEEMAGAVLADV 61 Query: 63 DAWFRQHVFEALNERDDAVAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMVRD 122 DAWF +++ L +DDA I AM+ +V+ YF SG+R+CLVG FAL R+RF+ + D Sbjct: 62 DAWFEHAIYQPL-RKDDADQAIAAMWTNVNDYFRSGRRICLVGAFALDETRERFSAEIGD 120 Query: 123 YFIAWIDALASALVRTGRKPKEARTLAEEVVGGIQGALVLARALDSTDVFADALKRFQKR 182 YFI WIDAL SAL+R G EA+TLAEE V GIQGALVL+RALD +F +L KR Sbjct: 121 YFIRWIDALRSALMRAGCSEGEAQTLAEEGVAGIQGALVLSRALDDRMIFTRSLDTLAKR 180 Query: 183 L 183 L Sbjct: 181 L 181 >ref|YP_002362435.1| TetR family transcriptional regulator [Methylocella silvestris BL2] gb|ACK51073.1| transcriptional regulator, TetR family [Methylocella silvestris BL2] Length = 186 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 107/185 (57%), Positives = 126/185 (68%) Query: 1 MARVIAEKDDVIPLLAEVFRTYGFEGASLARISEGTRLGKGSIYHFFPGGKEEMAQAVLG 60 MAR IAE+ D++PLLAE FR GFEGASL I T LGKGS+YHFFPGGKEEMA+AVL Sbjct: 1 MARKIAERSDIVPLLAEAFRENGFEGASLTLIGAKTGLGKGSLYHFFPGGKEEMAEAVLA 60 Query: 61 HVDAWFRQHVFEALNERDDAVAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMV 120 +++WF HV+ L E +DA + M V YF SG+R CL+G FAL N RDRF+ + Sbjct: 61 DIESWFEAHVYRPLRETEDAAQAVGDMRQSVEAYFRSGRRACLIGAFALDNVRDRFSAKI 120 Query: 121 RDYFIAWIDALASALVRTGRKPKEARTLAEEVVGGIQGALVLARALDSTDVFADALKRFQ 180 R+YF AW +ALA AL R G PKE AEE V IQGALVLARALD VF A+ R + Sbjct: 121 RNYFAAWTEALAGALERGGVDPKEVPYRAEEAVANIQGALVLARALDDPAVFERAMARIE 180 Query: 181 KRLLG 185 RLL Sbjct: 181 ARLLA 185 >ref|YP_002422170.1| TetR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK84242.1| transcriptional regulator, TetR family [Methylobacterium chloromethanicum CM4] Length = 187 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 107/182 (58%), Positives = 129/182 (70%) Query: 1 MARVIAEKDDVIPLLAEVFRTYGFEGASLARISEGTRLGKGSIYHFFPGGKEEMAQAVLG 60 MAR +AE+ DV+PLLAEVFR +G+EGASL+ IS+ T LGKGS+YHFFPGGKEEMA AVL Sbjct: 1 MARTVAERSDVLPLLAEVFREHGYEGASLSLISKATGLGKGSLYHFFPGGKEEMAGAVLA 60 Query: 61 HVDAWFRQHVFEALNERDDAVAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMV 120 +D WF +VF L E +D + AMF + YF SG+RVCLVG +L + RDRFA + Sbjct: 61 EIDGWFEANVFRPLRETEDPAEAVAAMFATAADYFRSGRRVCLVGALSLSDARDRFAGRL 120 Query: 121 RDYFIAWIDALASALVRTGRKPKEARTLAEEVVGGIQGALVLARALDSTDVFADALKRFQ 180 RDYF WI+ALA+AL R G A LAEE VGGIQGA+VLARALD +VF L + Sbjct: 121 RDYFARWIEALAAALSRAGHSSASAGMLAEEAVGGIQGAVVLARALDRPEVFERILAGLR 180 Query: 181 KR 182 R Sbjct: 181 AR 182 >ref|YP_001925981.1| TetR family transcriptional regulator [Methylobacterium populi BJ001] gb|ACB81446.1| transcriptional regulator, TetR family [Methylobacterium populi BJ001] Length = 185 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 108/177 (61%), Positives = 128/177 (72%) Query: 6 AEKDDVIPLLAEVFRTYGFEGASLARISEGTRLGKGSIYHFFPGGKEEMAQAVLGHVDAW 65 AE+ D++P LAEVFR +G+EGASL+ IS+ T LGKGS+YHFFPGGKEEMAQAVL +D W Sbjct: 4 AERSDLLPRLAEVFREHGYEGASLSLISQATGLGKGSLYHFFPGGKEEMAQAVLAEIDGW 63 Query: 66 FRQHVFEALNERDDAVAGIKAMFDDVSRYFLSGQRVCLVGVFALGNERDRFAVMVRDYFI 125 F VF L E DDA A + AMF V+ YF SG+RVCLVG +L + RDRF +R YF Sbjct: 64 FAVQVFRPLREADDADAAVAAMFRTVAEYFRSGRRVCLVGALSLSDARDRFGERLRAYFA 123 Query: 126 AWIDALASALVRTGRKPKEARTLAEEVVGGIQGALVLARALDSTDVFADALKRFQKR 182 W+ AL+ ALVR G P+ A LAEEVVGGIQGALVLARALD T+VF L + R Sbjct: 124 EWVVALSQALVRAGHPPETADALAEEVVGGIQGALVLARALDRTEVFERILAGLRDR 180