BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4236.p (432 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776759.1| anti-restriction protein ArdA [Herbaspirillu... 522 e-146 ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum S... 332 6e-89 ref|YP_004703525.1| diguanylate cyclase [Pseudomonas putida S16]... 285 1e-74 ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans... 285 1e-74 ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51] ... 284 2e-74 >ref|YP_003776759.1| anti-restriction protein ArdA [Herbaspirillum seropedicae SmR1] gb|ADJ64851.1| anti-restriction ArdA protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 267/359 (74%), Positives = 299/359 (83%), Gaps = 7/359 (1%) Query: 75 VRFVQRIYRLRVIGLGVGFFCVAAGFLQHPVPWPLWLLLAAHGYLWPHLARYWALKSTIP 134 +RFV+RIY LR IGLGVGFFCVAA F+Q PV WPLW LL HGYLWP +AR WAL S IP Sbjct: 1 MRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASRIP 60 Query: 135 YRAERRNLIIDAAFGGFWIAALHGNLVPSAVIISMLSMDNIAAGGLRLFMRGLYASLVAG 194 YRAERRNL+IDAAFGGFWIAA+ GNLVPSAVI+SMLSMDNIAAGGLRLFMRGLYAS+ A Sbjct: 61 YRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIAAC 120 Query: 195 VLGWWLLGAHFQPQSDLTTILACLPMMMLYPLALGQSTYLMSKKLADRSRQFEIVSQLDG 254 LGWWLL AH+ PQSDL TILACLPMM LYPLALG+STY MSKKLA+RSRQFE+VSQ+DG Sbjct: 121 ALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQMDG 180 Query: 255 LTLLFNRRYWESLLLGEFERLHRQSSAQH-QTFLLLLDLDHFKSINDTWGHLIGDEVLRN 313 LT LFNRRYWESLL+ EF + + AQ ++FLLLLDLDHFK INDT GHL+GDEVLRN Sbjct: 181 LTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVLRN 240 Query: 314 FARLLRTMLREQDAIGRYGGEEFGVILRDVSPADALALSQRVIEAARTRNDE-NNLYGCT 372 FA+LLR LR++D IGRYGGEEF VILR+++ ADAL LSQR++E AR D N LYGCT Sbjct: 241 FAQLLRIHLRKEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYGCT 300 Query: 373 VSAGLVPFSADMDAHFVWLQRADHAMYCAKESGRDRLVVWDPALERAPRMPNQPPPPCC 431 VSAGLVPF++DM+AHFVWLQRADHAMYCAK +GRDRLVVW+ L R N P C Sbjct: 301 VSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRLVVWEATLVR-----NAEPATVC 354 >ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum STM815] gb|ACC72984.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 359 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 164/341 (48%), Positives = 236/341 (69%), Gaps = 4/341 (1%) Query: 72 GKGVRFVQRIYRLRVIGLGVGFFCVAAGFLQHPVPWPLWLLLAAHGYLWPHLARYWALKS 131 G+G FV+R+YRLR+ GLG+GFFCVA+ + LW LL HG++WPH+AR AL Sbjct: 10 GQGKSFVERVYRLRIAGLGLGFFCVASVLVLQHRGAVLWSLLVFHGFVWPHVARRAALAC 69 Query: 132 TIPYRAERRNLIIDAAFGGFWIAALHGNLVPSAVIISMLSMDNIAAGGLRLFMRGLYASL 191 +P+R E NL+IDA FGGFW+ A+ N++P+A+I++M+SM+NI AGGL LF RG+ A + Sbjct: 70 EVPFRGEHLNLMIDAMFGGFWVVAMRFNVLPAALILAMVSMNNIGAGGLPLFARGVIAHV 129 Query: 192 VAGVLGWWLLGAHFQPQSDLTTILACLPMMMLYPLALGQSTYLMSKKLADRSRQFEIVSQ 251 + ++G +G F P S + TILACLP +++YPLALG ++Y +S KLA R+R+ E +S+ Sbjct: 130 LGVLVGLVTVGFMFSPMSQMPTILACLPFLLIYPLALGFTSYRLSLKLAQRTRELEHLSR 189 Query: 252 LDGLTLLFNRRYWESLLLGEFERLHRQSSAQHQTFLLLLDLDHFKSINDTWGHLIGDEVL 311 DGLT L+NRR+WE LL EFER + ++ + L+L+DLDHFK INDT GH GD VL Sbjct: 190 TDGLTRLWNRRHWEGLLADEFERCR---ANRYASCLMLIDLDHFKRINDTMGHPAGDAVL 246 Query: 312 RNFARLLRTMLREQDAIGRYGGEEFGVILRDVSPADALALSQRVIEAARTRNDE-NNLYG 370 ++FA LLR+ R D+IGRYGGEEFGV+L + +A +++ +++ R + E + Sbjct: 247 QSFADLLRSHFRGGDSIGRYGGEEFGVVLPGATLREAHTIAKVLVQRVREKTKEASKECP 306 Query: 371 CTVSAGLVPFSADMDAHFVWLQRADHAMYCAKESGRDRLVV 411 CT+S G+ + D+ + WLQ D ++Y AK +GRDR+VV Sbjct: 307 CTISVGIAQLTDDLPDYHTWLQEVDRSLYQAKATGRDRIVV 347 >ref|YP_004703525.1| diguanylate cyclase [Pseudomonas putida S16] gb|AEJ14645.1| diguanylate cyclase [Pseudomonas putida S16] Length = 360 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 154/339 (45%), Positives = 213/339 (62%), Gaps = 4/339 (1%) Query: 72 GKGVRFVQRIYRLRVIGLGVGFFCVAAGFLQHPVPWPLWLLLAAHGYLWPHLARYWALKS 131 GKG+ F +RIY RVIGLG+G F V A P WLL+ +G LWPH+A WA +S Sbjct: 9 GKGLSFAKRIYLPRVIGLGIGLFSVMAAMAPLSPPTWAWLLVLFNGLLWPHVAYLWAARS 68 Query: 132 TIPYRAERRNLIIDAAFGGFWIAALHGNLVPSAVIISMLSMDNIAAGGLRLFMRGLYASL 191 PY+AE+RNL++D+ GGFW AA+H N +PS ++SM++M+N+AAGG R+ +RG+ A L Sbjct: 69 ATPYQAEQRNLVLDSLMGGFWTAAMHFNPLPSVTVLSMMTMNNVAAGGKRMVVRGMLAQL 128 Query: 192 VAGVLGWWLLGAHFQPQSDLTTILACLPMMMLYPLALGQSTYLMSKKLADRSRQFEIVSQ 251 ++ LLG Q + + ACLPM+ LYPLALG Y ++ KLAD R+ +S Sbjct: 129 GGMLVAILLLGPGLQLNATPLQVYACLPMLTLYPLALGWVCYQLAIKLADHKRRLSTLSL 188 Query: 252 LDGLTLLFNRRYWESLLLGEFERLHRQSSAQHQTFLLLLDLDHFKSINDTWGHLIGDEVL 311 D LT L N W+ LLL +F+ +Q + L+D+DHFK+INDT+GH++GD VL Sbjct: 189 TDSLTGLLNHGAWKDLLLLKFQACQQQKG---HAVIALIDIDHFKTINDTFGHVVGDCVL 245 Query: 312 RNFARLLRTMLREQDAIGRYGGEEFGVILRDVSPADALALSQRVIE-AARTRNDENNLYG 370 R LR LRE D GRYGG+EF VIL D S A+A +R+ E A RN + Sbjct: 246 RQLGAELRHSLREGDQAGRYGGDEFCVILPDTSEAEACLAMERLRERVASYRNPQLPHLR 305 Query: 371 CTVSAGLVPFSADMDAHFVWLQRADHAMYCAKESGRDRL 409 ++S GL F AD+++ WL++AD A+Y AK +GRD++ Sbjct: 306 ISLSIGLSAFEADLESPEHWLEQADKALYTAKHAGRDQV 344 >ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV40297.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 353 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 149/346 (43%), Positives = 214/346 (61%), Gaps = 10/346 (2%) Query: 74 GVRFVQRIYRLRVIGLGVGFFCVAAGFLQHPVPWPLWLLLAAHGYLWPHLARYWALKSTI 133 G+ F +R Y RV+GLG+GF CV + F + +W LL HG++WPHLA WA +S + Sbjct: 13 GLSFARRTYLPRVVGLGIGFICVFSVFYTQKTSYWVWGLLIFHGFIWPHLAYQWARRSAM 72 Query: 134 PYRAERRNLIIDAAFGGFWIAALHGNLVPSAVIISMLSMDNIAAGGLRLFMRGLYASLVA 193 P++AE RNL+ID+ FGG W+A + N +PS VI+SM+ M+N+A+ G LF +GL +++ Sbjct: 73 PFKAEIRNLLIDSFFGGLWVAMMAFNALPSVVILSMMGMNNMASAGKSLFFKGLAVQVLS 132 Query: 194 GVLGWWLLGAHFQPQSDLTTILACLPMMMLYPLALGQSTYLMSKKLADRSRQFEIVSQLD 253 + LLG FQPQS I CLPM+ YP+ LG TY +K+LA++ ++ +S D Sbjct: 133 ALAISALLGFPFQPQSTPLQIYLCLPMIYFYPILLGLVTYRTAKRLAEKKQELLRISMRD 192 Query: 254 GLTLLFNRRYWESLLLGEFERLHRQSSAQHQTFLLLLDLDHFKSINDTWGHLIGDEVLRN 313 GLT L+NRR+WE LL +F+ R QH L+L+D+DHFK+INDT+GH +GDE L Sbjct: 193 GLTGLYNRRHWEHLLHHQFDSCRRY---QHSATLILMDIDHFKTINDTFGHALGDEALAV 249 Query: 314 FARLLRTMLREQDAIGRYGGEEFGVILRDVSPADA----LALSQRVIEAARTRNDENNLY 369 A L LR D +GRYGG+EFG +L + S A L + +R+ E + L Sbjct: 250 LAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQASIALLRIQERLNEIVFREAPQLRL- 308 Query: 370 GCTVSAGLVPFSADMDAHFVWLQRADHAMYCAKESGRDRLVVWDPA 415 +SAG+ + DM + WL+ AD+A+Y AK +GR+RL + P Sbjct: 309 --NISAGIADYHGDMSGYLDWLKAADNALYRAKNNGRNRLELAVPG 352 >ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gb|EGB97480.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 358 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 150/339 (44%), Positives = 215/339 (63%), Gaps = 4/339 (1%) Query: 72 GKGVRFVQRIYRLRVIGLGVGFFCVAAGFLQHPVPWPLWLLLAAHGYLWPHLARYWALKS 131 GKG+ FV+RIY RV+G+G+G F V AG P +W L+ +G LWPH+A WA +S Sbjct: 7 GKGLSFVKRIYPPRVVGMGIGLFSVMAGVAPQSPPTWVWGLMLFNGLLWPHVAYLWASRS 66 Query: 132 TIPYRAERRNLIIDAAFGGFWIAALHGNLVPSAVIISMLSMDNIAAGGLRLFMRGLYASL 191 PYRAE+RNL++D+ GGFW AA+H N +P+ ++SM++M+N+AAGG +L ++G A L Sbjct: 67 ATPYRAEQRNLLLDSLLGGFWAAAMHFNPLPTVTVLSMMTMNNVAAGGRQLVLKGAVAQL 126 Query: 192 VAGVLGWWLLGAHFQPQSDLTTILACLPMMMLYPLALGQSTYLMSKKLADRSRQFEIVSQ 251 ++G LL Q + I ACLPM+ LYPLALG Y ++ +L D R+ +S Sbjct: 127 AGILVGTLLLAPGLQLNATALQIYACLPMLTLYPLALGWVCYRLAIQLGDHKRRLSALSL 186 Query: 252 LDGLTLLFNRRYWESLLLGEFERLHRQSSAQHQTFLLLLDLDHFKSINDTWGHLIGDEVL 311 D LT L N W+ LLL ++++ +Q + + L+D+DHFK+INDT+GH++GD VL Sbjct: 187 TDSLTGLLNHGAWKDLLLVKYQKCKQQKA---HAVIALIDIDHFKTINDTFGHVVGDCVL 243 Query: 312 RNFARLLRTMLREQDAIGRYGGEEFGVILRDVSPADALALSQRVIE-AARTRNDENNLYG 370 R + LR LRE D GRYGG+EF VIL S A A + +R+ E + RN + Sbjct: 244 RQLSAELRRNLRECDQAGRYGGDEFCVILPGTSEAQACQIMERLREQVSGYRNAQLPHLR 303 Query: 371 CTVSAGLVPFSADMDAHFVWLQRADHAMYCAKESGRDRL 409 ++S GL PF+A +++ WLQ AD A+Y AK +GRDR+ Sbjct: 304 ISLSIGLSPFNASLESPEHWLQEADKALYTAKHAGRDRV 342