BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4235.p (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776758.1| D-alanyl-D-alanine carboxipeptidase 3 (S13) ... 864 0.0 ref|YP_004754350.1| D-alanyl-D-alanine carboxypeptidase [Collimo... 578 e-163 ref|YP_001352290.1| D-alanyl-D-alanine carboxypeptidase [Janthin... 546 e-153 ref|YP_001098959.1| putative D-alanyl-D-alanine carboxypeptidase... 504 e-140 ref|ZP_08275199.1| D-alanyl-D-alanine carboxypeptidase [Oxalobac... 488 e-136 >ref|YP_003776758.1| D-alanyl-D-alanine carboxipeptidase 3 (S13) family signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ64850.1| D-alanyl-D-alanine carboxipeptidase 3 (S13) family signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 484 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 442/484 (91%), Positives = 464/484 (95%) Query: 1 MLRPVLRLPVRLPRSRLSCLPLLAVLLLPMGHAAAESLPPAVVGALRVAHIPQQNTGVLV 60 MLRPVLRLPVRLPRSRLSCLPLLAVLLLPMGHAAA+SLPPAVVGALRVAHIPQQNTGVLV Sbjct: 1 MLRPVLRLPVRLPRSRLSCLPLLAVLLLPMGHAAAQSLPPAVVGALRVAHIPQQNTGVLV 60 Query: 61 IDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAALEILGPTYTWKTQAYIDGTLAGGVLNG 120 IDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAALE+LGPT+TWKTQAYIDGTL+GGVLNG Sbjct: 61 IDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAALEMLGPTFTWKTQAYIDGTLSGGVLNG 120 Query: 121 DLILKGGGDPKLVLENFWLFLRQLRARGIKDIRGNLVLDRTYFAESSYDPSQFDGDPQKP 180 DLILKGGGDPKLVLENFWL LRQLRARGI+DIRGNLVLDR+YFA SSYDP+QFDGDPQKP Sbjct: 121 DLILKGGGDPKLVLENFWLLLRQLRARGIQDIRGNLVLDRSYFAPSSYDPAQFDGDPQKP 180 Query: 181 YNAGPDALLMNYRTQAFRFEPDAASGVVSVSMDPPMAGITVTPPRLSQEPCGDWQGKLKM 240 YNAGPDALL+NYRTQAFRFEPDAASG VSVSMDPPMAG T+TPPRLSQEPCGDWQGKL + Sbjct: 181 YNAGPDALLLNYRTQAFRFEPDAASGTVSVSMDPPMAGFTITPPRLSQEPCGDWQGKLML 240 Query: 241 NNDPNAVSFTGSYSADCGPRVWYVHPYRMNNVQYVGASFVQMWADLGGSFAGRVVNGQVM 300 NND + +F+GSYSADCG RVWYVHPYRM+NVQYVGASF QMWADLGG FAGRV++GQV Sbjct: 241 NNDASGATFSGSYSADCGARVWYVHPYRMSNVQYVGASFAQMWADLGGRFAGRVLDGQVT 300 Query: 301 PSARLMVEVQSPPLPEVIRDINKYSNNVMARQVLLTLGAEMTGQPGDTTNAVRAVRGWLN 360 PSAR+MVEVQSP LPEVIRDINKYSNNVMARQVLLTLGAEMTGQPGD NA RAVRGWL Sbjct: 301 PSARMMVEVQSPALPEVIRDINKYSNNVMARQVLLTLGAEMTGQPGDPVNAARAVRGWLG 360 Query: 361 DKGIDTNGLAIENGAGLSRVERVTPALLASVLVQAYRSPLMPEFVSSLPLVGYDGTMRRR 420 DKGIDTNGLAIENGAGLSR+ERVTP LLA+VL+QA+RSPLMPEFVSSLPLVGYDGTMRRR Sbjct: 361 DKGIDTNGLAIENGAGLSRIERVTPGLLANVLLQAWRSPLMPEFVSSLPLVGYDGTMRRR 420 Query: 421 LKTQSVAGQAHIKTGTLNDVRSIAGYVQAASGKTYVVVFLINHAAAPNGQQAQDALLQWV 480 LKTQ VAGQAHIKTGTLNDVRSIAGYVQAASGKTYVVVFLINH AAPNGQ+AQDALLQWV Sbjct: 421 LKTQGVAGQAHIKTGTLNDVRSIAGYVQAASGKTYVVVFLINHPAAPNGQKAQDALLQWV 480 Query: 481 YENG 484 YENG Sbjct: 481 YENG 484 >ref|YP_004754350.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] gb|AEK63527.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] Length = 509 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 286/453 (63%), Positives = 345/453 (76%), Gaps = 1/453 (0%) Query: 33 AAAESLPPAVVG-ALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTD 91 AA PPA AL++A IP QN GV V + +G+ +V+ S N G PFNPAS MKLVTTD Sbjct: 57 AALSVTPPASFSKALQLAGIPAQNVGVYVQEVDGAGKVMASANAGTPFNPASTMKLVTTD 116 Query: 92 AALEILGPTYTWKTQAYIDGTLAGGVLNGDLILKGGGDPKLVLENFWLFLRQLRARGIKD 151 AALE+LGPTY WKTQAY +G+ G VL GDLI KG GDPKLVLENFWLFLRQ+RA+GI+D Sbjct: 117 AALELLGPTYRWKTQAYTNGSQVGNVLQGDLIFKGNGDPKLVLENFWLFLRQIRAKGIRD 176 Query: 152 IRGNLVLDRTYFAESSYDPSQFDGDPQKPYNAGPDALLMNYRTQAFRFEPDAASGVVSVS 211 IRGN+VLDR+ F ES+YDPS+FDGDP KPYN GPDALL+NY+ F+F P+ + V+V Sbjct: 177 IRGNIVLDRSTFDESTYDPSEFDGDPMKPYNVGPDALLLNYKALTFQFVPNPETRQVNVL 236 Query: 212 MDPPMAGITVTPPRLSQEPCGDWQGKLKMNNDPNAVSFTGSYSADCGPRVWYVHPYRMNN 271 +DPPM+G +TPPRL C DWQGKL+ + D + SF G+ A CG + WY++PY+M++ Sbjct: 237 IDPPMSGYPITPPRLGSGNCDDWQGKLQASVDADGASFNGALPASCGEKTWYINPYKMSS 296 Query: 272 VQYVGASFVQMWADLGGSFAGRVVNGQVMPSARLMVEVQSPPLPEVIRDINKYSNNVMAR 331 QY GA F QMW DLGGSF+G V NG + L+ E S LPEVIRDINKYSNNVMAR Sbjct: 297 TQYFGAVFRQMWTDLGGSFSGVVKNGVAPAGSTLVSEWNSVTLPEVIRDINKYSNNVMAR 356 Query: 332 QVLLTLGAEMTGQPGDTTNAVRAVRGWLNDKGIDTNGLAIENGAGLSRVERVTPALLASV 391 QVLLT+ A++ P RAV+ WL++KGI+TNGL IENG+GLSR ER++ + + Sbjct: 357 QVLLTIAADILKVPATPDRGARAVQSWLSNKGIETNGLVIENGSGLSRNERISARTMGRM 416 Query: 392 LVQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDVRSIAGYVQAAS 451 + A++SP+MPEFVSS+PLVGYDGTMR+RLK QSVAGQAH+KTGTLNDVR+IAGYV AAS Sbjct: 417 MAAAFQSPVMPEFVSSMPLVGYDGTMRKRLKNQSVAGQAHVKTGTLNDVRAIAGYVLAAS 476 Query: 452 GKTYVVVFLINHAAAPNGQQAQDALLQWVYENG 484 GK Y VV LINH AP GQ AQD LLQWVYENG Sbjct: 477 GKYYAVVCLINHPNAPRGQAAQDGLLQWVYENG 509 >ref|YP_001352290.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] gb|ABR89724.1| D-alanyl-D-alanine carboxypeptidase (pbp4, peptidase family s13) [Janthinobacterium sp. Marseille] Length = 475 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 276/479 (57%), Positives = 340/479 (70%), Gaps = 4/479 (0%) Query: 6 LRLPVRLPRSRLSCLPLLAVLLLPMGHAAAESLPPAVVGALRVAHIPQQNTGVLVIDTEG 65 +R+ RLP LS + + + P AAE LP V AL+ + IPQ G V + G Sbjct: 1 MRITTRLP---LSLALIFSFTVAPFAAYAAEGLPTVVSEALKRSAIPQSAVGTYVQEVSG 57 Query: 66 SKRVLVSNNIGQPFNPASVMKLVTTDAALEILGPTYTWKTQAYIDGTLAGGVLNGDLILK 125 K + N FNPAS MKLVT+DAALE+LGPT+ WKTQAY+ GTL G VL+GDLI+K Sbjct: 58 QKPWIAVNET-TGFNPASTMKLVTSDAALELLGPTFNWKTQAYMTGTLNGDVLDGDLIIK 116 Query: 126 GGGDPKLVLENFWLFLRQLRARGIKDIRGNLVLDRTYFAESSYDPSQFDGDPQKPYNAGP 185 G GDPKLV ENFW FLR++RA GI++IRGNL+LDR+ F + YD +QFDGDP KPYNAGP Sbjct: 117 GSGDPKLVTENFWQFLRKIRAAGIREIRGNLILDRSIFEDMPYDAAQFDGDPLKPYNAGP 176 Query: 186 DALLMNYRTQAFRFEPDAASGVVSVSMDPPMAGITVTPPRLSQEPCGDWQGKLKMNNDPN 245 DALL+NY+ AF F P+ A V +++DPP+A V P L+ CGDWQGKL N Sbjct: 177 DALLLNYKVFAFHFLPNVARNQVDITIDPPVATYPVMAPALTNGACGDWQGKLLPNMGRV 236 Query: 246 AVSFTGSYSADCGPRVWYVHPYRMNNVQYVGASFVQMWADLGGSFAGRVVNGQVMPSARL 305 + +FTGSYSA CG + WY+HPY MN+ +Y G F Q+W D+GG F G V NG V P+AR Sbjct: 237 STNFTGSYSAACGEKTWYLHPYLMNHSEYFGVVFRQLWNDVGGVFNGAVNNGMVPPAARF 296 Query: 306 MVEVQSPPLPEVIRDINKYSNNVMARQVLLTLGAEMTGQPGDTTNAVRAVRGWLNDKGID 365 + E QS LPEVIRDINKYSNNVMARQ+LLT+ A++ P R V+ WL +KG+D Sbjct: 297 VTEWQSTSLPEVIRDINKYSNNVMARQLLLTVAADVLKVPASPERGARVVKTWLANKGMD 356 Query: 366 TNGLAIENGAGLSRVERVTPALLASVLVQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQS 425 T+ + IENG+GLSR ER+ ++ +LV ++SP MPEF+SSLPLVGYDGTMR+RL Q+ Sbjct: 357 TSQVVIENGSGLSRTERIPVGVMGRMLVSTFQSPTMPEFMSSLPLVGYDGTMRKRLTKQT 416 Query: 426 VAGQAHIKTGTLNDVRSIAGYVQAASGKTYVVVFLINHAAAPNGQQAQDALLQWVYENG 484 VAG+AHIKTGTLNDVR+IAGYV AASGK Y VV +INH A GQ A DALLQW+YENG Sbjct: 417 VAGRAHIKTGTLNDVRAIAGYVLAASGKRYAVVCIINHPNAVGGQAAHDALLQWIYENG 475 >ref|YP_001098959.1| putative D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] emb|CAL60832.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Herminiimonas arsenicoxydans] Length = 474 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 260/454 (57%), Positives = 324/454 (71%), Gaps = 5/454 (1%) Query: 32 HAAAESLPPAVVGALRVAHIPQQNTGVLVIDTEGS-KRVLVSNNIGQPFNPASVMKLVTT 90 HAA LP V AL+ + IP G V D G R+ V++ +G FNPAS MKLVT+ Sbjct: 25 HAAGLPLP--VTDALKRSGIPLNAVGAYVQDVSGPVPRIAVNSMVG--FNPASTMKLVTS 80 Query: 91 DAALEILGPTYTWKTQAYIDGTLAGGVLNGDLILKGGGDPKLVLENFWLFLRQLRARGIK 150 +AAL++LGP +TWKTQ Y GT +G VLNGDL++KG GDPKLV E FW LRQ+RA GI+ Sbjct: 81 NAALDLLGPAFTWKTQVYATGTQSGDVLNGDLVIKGSGDPKLVTEKFWQLLRQIRAAGIR 140 Query: 151 DIRGNLVLDRTYFAESSYDPSQFDGDPQKPYNAGPDALLMNYRTQAFRFEPDAASGVVSV 210 +IRGNL+LDR+ F SYD +QFDGDP KPYN GPDALL+NY+ AF F PD A +V V Sbjct: 141 EIRGNLILDRSAFDGMSYDAAQFDGDPLKPYNVGPDALLLNYKVFAFHFLPDPARHLVDV 200 Query: 211 SMDPPMAGITVTPPRLSQEPCGDWQGKLKMNNDPNAVSFTGSYSADCGPRVWYVHPYRMN 270 S+DPP+AG +TPP L C DWQ K + SF GS++A CG + WY+HPY+M+ Sbjct: 201 SVDPPLAGYPITPPVLLDGACADWQAKSLPTLNRKGASFAGSFAAACGEKTWYLHPYQMS 260 Query: 271 NVQYVGASFVQMWADLGGSFAGRVVNGQVMPSARLMVEVQSPPLPEVIRDINKYSNNVMA 330 +Y F Q+W D+GG F G V +G + AR++ E QSP LPEV+RDINKYSNNVMA Sbjct: 261 ATEYFNVVFRQLWTDVGGVFKGEVNDGVLPSGARMLTEWQSPALPEVVRDINKYSNNVMA 320 Query: 331 RQVLLTLGAEMTGQPGDTTNAVRAVRGWLNDKGIDTNGLAIENGAGLSRVERVTPALLAS 390 RQ+LLTL +++ P R V+ WL KGIDT+ L IENG+GLSR+ER++ L Sbjct: 321 RQLLLTLASDVLKLPATPERGGRVVKTWLAAKGIDTSQLVIENGSGLSRIERISAEALGR 380 Query: 391 VLVQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDVRSIAGYVQAA 450 +LV A++SP+MPE +S+LPL GYDGTMR+RL Q+VAG+AHIKTG+LNDVR++AGYV AA Sbjct: 381 MLVAAFQSPVMPELMSALPLAGYDGTMRKRLLAQTVAGRAHIKTGSLNDVRAVAGYVLAA 440 Query: 451 SGKTYVVVFLINHAAAPNGQQAQDALLQWVYENG 484 SGK Y VV +INH AP GQ A DALLQWVYENG Sbjct: 441 SGKRYAVVCIINHINAPGGQAAHDALLQWVYENG 474 >ref|ZP_08275199.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31325.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 461 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 244/451 (54%), Positives = 318/451 (70%), Gaps = 2/451 (0%) Query: 34 AAESLPPAVVGALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAA 93 A LP V A + A I G+ V+D + VL S N P NPAS MKL+TT AA Sbjct: 11 AHAGLPAPVAAAFKRAGIAPSGIGIEVVDMASGRNVL-SLNSELPLNPASTMKLLTTSAA 69 Query: 94 LEILGPTYTWKTQAYIDGTLAGGVLNGDLILKGGGDPKLVLENFWLFLRQLRARGIKDIR 153 L++LGPTY++ T+AY GTL GG+L GDLIL+G GDPKLV+ENFWLFLR++RA+G++DIR Sbjct: 70 LDLLGPTYSFTTEAYRRGTLQGGLLQGDLILRGSGDPKLVIENFWLFLRKIRAQGVRDIR 129 Query: 154 GNLVLDRTYFAESSYDPSQFDGDPQKPYNAGPDALLMNYRTQAFRFEPDAASGVVSVSMD 213 GNLVLDR+ F ++ DP+ FDGDP K YN GPDALL+N+R A F PD A GVV V +D Sbjct: 130 GNLVLDRSAFDDTVIDPALFDGDPLKAYNVGPDALLLNFRALAVSFMPDRAQGVVKVRLD 189 Query: 214 PPMAGITVTPPRLSQEPC-GDWQGKLKMNNDPNAVSFTGSYSADCGPRVWYVHPYRMNNV 272 P ++ + PP+L+ C GDW+ + DP SF G Y+ CG + W + PY+++ Sbjct: 190 PALSAYAIRPPQLTSGECIGDWRTAISATLDPAGASFDGPYALGCGEKSWQLSPYQLSRN 249 Query: 273 QYVGASFVQMWADLGGSFAGRVVNGQVMPSARLMVEVQSPPLPEVIRDINKYSNNVMARQ 332 +Y+ F Q+W +LGG+F G V++G V A + + +SP +PE+IRD+NK+SNNVMARQ Sbjct: 250 RYLELVFRQLWTELGGTFDGSVIDGVVTTDAVAVAQWESPSMPELIRDVNKFSNNVMARQ 309 Query: 333 VLLTLGAEMTGQPGDTTNAVRAVRGWLNDKGIDTNGLAIENGAGLSRVERVTPALLASVL 392 + LTLG+ + QP + A+ GWL + ID +GL +ENGAGLSR+ER++ L ++L Sbjct: 310 LFLTLGSTVQLQPASIAASRSAIAGWLATRQIDASGLVLENGAGLSRLERISSRTLGALL 369 Query: 393 VQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDVRSIAGYVQAASG 452 AYR+P MPEFVSSLPLVGYDGTMR+RL+ + V+G AHIKTG+L DVRSIAGYVQAASG Sbjct: 370 TAAYRAPTMPEFVSSLPLVGYDGTMRKRLRFEGVSGHAHIKTGSLQDVRSIAGYVQAASG 429 Query: 453 KTYVVVFLINHAAAPNGQQAQDALLQWVYEN 483 K + VV LIN A G +AQDALLQWV+EN Sbjct: 430 KQFAVVCLINDPNAARGAEAQDALLQWVFEN 460