BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4230.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_927988.1| hypothetical protein plu0643 [Photorhabdus lumi... 83 4e-14 ref|YP_003304058.1| hypothetical protein Sdel_0994 [Sulfurospiri... 75 8e-12 ref|YP_003304055.1| hypothetical protein Sdel_0991 [Sulfurospiri... 75 1e-11 ref|ZP_08177144.1| hypothetical protein XVE_1017 [Xanthomonas ve... 74 2e-11 ref|YP_004790962.1| hypothetical protein BurJV3_0402 [Burkholder... 73 4e-11 >ref|NP_927988.1| hypothetical protein plu0643 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE12938.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 2123 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 4/129 (3%) Query: 22 GDVSSSMAGHAWIELVRSDGSSVQAGFGPAETKSGVASVEGKIFASDRDAYAGDSYFTAS 81 GDV SS GH W L GS + GF E++ EG++ +D AY SY T + Sbjct: 30 GDVHSSAGGHMWYVLNDGSGSEISYGF---ESRYDEPWGEGRVTNNDNAAYQQTSYET-T 85 Query: 82 YAITEGQLRAIERFIAEPKEYGFDKDHYHAVTNSCVDFVWKALEQVGMNPDRFEGELHPM 141 +TE Q ++ F P GFD HY+ NSCVDFV+ +L+ VG N FEGEL P Sbjct: 86 VELTEFQYNRLKAFSEGPSLVGFDAKHYNVAKNSCVDFVFASLKAVGYNEKGFEGELFPN 145 Query: 142 NNIAHFSNL 150 +N H ++ Sbjct: 146 HNPMHLRDM 154 >ref|YP_003304058.1| hypothetical protein Sdel_0994 [Sulfurospirillum deleyianum DSM 6946] gb|ACZ12023.1| hypothetical protein Sdel_0994 [Sulfurospirillum deleyianum DSM 6946] Length = 585 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 6 LKLHVEAPGTTYTNSNGDV-SSSMAGHAW--IELVRSDG--SSVQAGFGPAETKSGVASV 60 L L + + GT Y DV +S+ GH W I++ DG +V GF PA G Sbjct: 4 LTLKIASSGTVY-----DVYGNSVTGHMWFSIDMDGPDGPAQAVSRGFAPALNWEGWPIA 58 Query: 61 EGKIFASDRDAYAGDSYFTASYAITEGQLRAIERFIAEPKEYGFDKDHYHAVTNSCVDFV 120 G I D Y +Y+T ITE Q + +E F +P GF Y +NSC+DF Sbjct: 59 PGSIHKDDDQKY-NSTYYTGQIVITEDQYKKLEAFADDPAGSGFSM-FYLGNSNSCIDFT 116 Query: 121 WKALEQVGMNPDRFEGELHPMNNIA 145 WKAL +GMNP FEG+L P +N A Sbjct: 117 WKALNVIGMNPSDFEGQLWPTSNAA 141 >ref|YP_003304055.1| hypothetical protein Sdel_0991 [Sulfurospirillum deleyianum DSM 6946] gb|ACZ12020.1| hypothetical protein Sdel_0991 [Sulfurospirillum deleyianum DSM 6946] Length = 679 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 6 LKLHVEAPGTTYTNSNGDVSSSMAGHAWIELVRSDGSSVQAGFGPAETKSGVASVEGKIF 65 + + + A GT YT+ D+ +S+ GH W L S+ GF P T+ GK++ Sbjct: 4 ITVKIAASGTAYTDPE-DLHNSLTGHMWYSLAEDGVSTGSFGFAPVITE---MDGPGKVY 59 Query: 66 ASDRDAYAGDSYFTASYAITEGQLRAIERFIAEPKEYG--FD-KDHYHAVTNSCVDFVWK 122 +D + YAG +Y+T + I + Q + F + G FD +Y+ +TNSCVD+VWK Sbjct: 60 RTDDEFYAG-TYYTGTIVIEKEQYDRLRNFGDKDNLNGNPFDFSTYYNGLTNSCVDYVWK 118 Query: 123 ALEQVGMNPDRFEGELHPMNN 143 AL +GMNP FEG+ P +N Sbjct: 119 ALNIIGMNPSDFEGQNIPTSN 139 >ref|ZP_08177144.1| hypothetical protein XVE_1017 [Xanthomonas vesicatoria ATCC 35937] gb|EGD10641.1| hypothetical protein XVE_1017 [Xanthomonas vesicatoria ATCC 35937] Length = 312 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 6 LKLHVEAPGTTYTNSNGDVSSSMAGHAWIELVRSDGSSVQAGFGPAETKSGVASVEGKIF 65 + L+V APGT D +S AGH + + Q FG A + GV S GK++ Sbjct: 7 VTLYVAAPGTPLL----DGGTSAAGHMYYTVTHG---KEQTSFGFAPIEHGVMSGPGKVY 59 Query: 66 ASDRDAYAGDSYFTASYAITEGQLRAIERFIAEPKEYGFDKDHYHAVTNSCVDFVWKALE 125 +D D Y ++ + I++ Q + F A+P E+GF+ YH NSC+D+ W A+ Sbjct: 60 NNDADQYQ-KPFYQRTMEISKDQYEKLMEFGAKPGEHGFNT-QYHGAMNSCIDYTWGAVN 117 Query: 126 QVGMN--------PDRFEGELHPMNNIAHFSNLKNPL 154 G++ FEG L P++N+ + ++K P+ Sbjct: 118 YAGLHRTDLKFIQDKDFEGGLKPLSNVEYIRSIKAPV 154 >ref|YP_004790962.1| hypothetical protein BurJV3_0402 [Burkholderia sp. JV3] gb|AEM49736.1| hypothetical protein BurJV3_0402 [Burkholderia sp. JV3] Length = 312 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 18/169 (10%) Query: 6 LKLHVEAPGTTYTNSNGDVSSSMAGHAWIELVRSDGSSVQAGFGPAETKSGVASVEGKIF 65 + ++V APGT +S AGH + V + S+ GF P E G + GK++ Sbjct: 7 VTIYVAAPGTPLLEG----GTSAAGHVYYT-VDNGRESISYGFAPKE--HGATTGPGKVY 59 Query: 66 ASDRDAYAGDSYFTASYAITEGQLRAIERFIAEPKEYGFDKDHYHAVTNSCVDFVWKALE 125 SD Y + ++ + I++ Q ++ F P ++GF+ + YH + NSC+DF W AL Sbjct: 60 DSDAREYQ-NPFYQRTLEISKDQYEKLKEFGDGPDKHGFNTE-YHGLNNSCIDFTWGALN 117 Query: 126 QVG--------MNPDRFEGELHPMNNIAHFSNLKNPLLPSS-SVQEYEK 165 G M FEG L P++N+ H +++ P S+ + + Y K Sbjct: 118 HAGLHRTNALFMQDKNFEGGLKPLSNVEHIRSIRAPFPDSALNTEHYNK 166