BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4226.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776756.1| glycine rich transmembrane protein [Herbaspi... 419 e-115 ref|YP_003753316.1| hypothetical protein RPSI07_2687 [Ralstonia ... 216 3e-54 ref|YP_004754348.1| hypothetical protein CFU_3701 [Collimonas fu... 215 5e-54 ref|YP_001898189.1| hypothetical protein Rpic_0606 [Ralstonia pi... 212 5e-53 ref|YP_001352293.1| hypothetical protein mma_0603 [Janthinobacte... 209 4e-52 >ref|YP_003776756.1| glycine rich transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64848.1| glycine rich transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 221/246 (89%), Positives = 231/246 (93%) Query: 1 MRKLLLTCWLLAWIALAAPARADDGLVPVPPLSAHVIDQVHLLQPQQRQALEGVLAEIEQ 60 MRKLLL+CWLLAW+ALA PARADDGLVPVPPLS HVIDQVHLLQ QQRQALEGVL EIEQ Sbjct: 1 MRKLLLSCWLLAWLALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQ 60 Query: 61 RTGSQIGVLLMSSTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEA 120 RTGSQIGVLLMSSTAPEAIEQYSIRVA+AWKLGRKG+DDGVILIVAKDNPKSLRRLRIEA Sbjct: 61 RTGSQIGVLLMSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEA 120 Query: 121 GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPAKRSSGAV 180 GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPP+KR + Sbjct: 121 GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQASTA 180 Query: 181 QTDDGGGWITLMVIGLFLVVFFTVLLKSRRSSRNVLNSNDWGRGGSTTAGVIIGSLVDEA 240 Q DGGGWITL+VIGLFLVVFF+VLLKSRR SRN LN NDWGRG STTAGVIIGS++DEA Sbjct: 181 QPSDGGGWITLLVIGLFLVVFFSVLLKSRRGSRNNLNDNDWGRGRSTTAGVIIGSILDEA 240 Query: 241 LRQASS 246 RQASS Sbjct: 241 ARQASS 246 >ref|YP_003753316.1| hypothetical protein RPSI07_2687 [Ralstonia solanacearum PSI07] emb|CBJ52053.1| conserved exported protein of unknown function, DUF477 [Ralstonia solanacearum PSI07] Length = 280 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 131/227 (57%), Positives = 164/227 (72%), Gaps = 4/227 (1%) Query: 1 MRKLLLT-CWLLAWIALAAPARADDGLVPVPPLSAHVIDQVHLLQPQQRQALEGVLAEIE 59 MR LL + ++ W+A A PA A LV VPPL+A V D L QQR ALE VLA+ E Sbjct: 5 MRALLASLVTMVLWLAAAWPAHAQTDLVAVPPLAARVTDLTGTLTAQQRGALEQVLADYE 64 Query: 60 QRTGSQIGVLLMSSTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIE 119 Q+ GSQI VL++++TAPE IE Y IRVAEAWK GRKGVDDG I+++AKDNP SLR++RIE Sbjct: 65 QQRGSQIFVLMVAATAPEPIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKMRIE 124 Query: 120 AGRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPAKRSSGA 179 GRG++GSLTDAQSKRIL+DV+APHFRQ DFYGGL+AG++AI T++ QE LPPA+R A Sbjct: 125 VGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSAGISAIQTVIAQENLPPAERGR-A 183 Query: 180 VQTDDGGGWITLMVIGLFLVVFFTVLLKSRRSSRNVLNSNDWGRGGS 226 +T+ G G ++ L ++VFF VL + RS V S GR GS Sbjct: 184 QRTESGIGTWLPVLFPLAIIVFF-VLSAAMRSGGRVAGSLP-GRPGS 228 >ref|YP_004754348.1| hypothetical protein CFU_3701 [Collimonas fungivorans Ter331] gb|AEK63525.1| conserved hypothetical protein, putative glycine rich transmembrane protein [Collimonas fungivorans Ter331] Length = 288 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 120/218 (55%), Positives = 153/218 (70%), Gaps = 10/218 (4%) Query: 27 VPVPPLSAHVIDQVHLLQPQQRQALEGVLAEIEQRTGSQIGVLLMSSTAPEAIEQYSIRV 86 V VPPL AHV D +LQP QR AL+ L+E E RTGSQI VLL+S T PE IE Y++RV Sbjct: 36 VAVPPLQAHVTDLAGMLQPAQRDALDNTLSEYEARTGSQIAVLLLSKTEPEGIEDYAVRV 95 Query: 87 AEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEAGRGVQGSLTDAQSKRILEDVIAPHFR 146 A+AWKLGRKG+DDGVIL+VAKDNPK+LRR+ I GRGVQG+LTDAQSKR+L+++IAP+F Sbjct: 96 ADAWKLGRKGIDDGVILLVAKDNPKALRRMMILTGRGVQGTLTDAQSKRVLQEIIAPYFS 155 Query: 147 QNDFYGGLAAGVTAITTLLEQEKLPPAKRSSGAVQTDDGGGWITLMVIGLF--LVVFFTV 204 + DFYGGL AG++AI LL+QE P R SG Q + W+ + LF ++ T+ Sbjct: 156 KGDFYGGLTAGISAIMPLLDQENFAPPSRKSGPAQ-EPSSDWLGALAPLLFFGFIILITI 214 Query: 205 LLKSRR---SSRNVLNSNDWGRGGSTTAGVIIGSLVDE 239 + ++R S LNSN WG AGVIIGS++ + Sbjct: 215 ISRARSGGAGSGRSLNSNVWG----NAAGVIIGSILSQ 248 >ref|YP_001898189.1| hypothetical protein Rpic_0606 [Ralstonia pickettii 12J] gb|ACD25757.1| protein of unknown function DUF477 [Ralstonia pickettii 12J] Length = 287 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 125/223 (56%), Positives = 159/223 (71%), Gaps = 5/223 (2%) Query: 4 LLLTCWLLAWIALAAPARADDGLVPVPPLSAHVIDQVHLLQPQQRQALEGVLAEIEQRTG 63 LLLT L W+A A PARA +V VPPL+A V D L +Q+ ALE VLA+ EQ+ G Sbjct: 11 LLLTVAL--WLATALPARAQSDMVAVPPLAARVTDLTGTLSAEQKSALEQVLADYEQQRG 68 Query: 64 SQIGVLLMSSTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEAGRG 123 SQI VL++ STAPE IE Y IRVA+AWK GRKGVDDG I+++AKDNP SLR++RIE GRG Sbjct: 69 SQIFVLMVPSTAPEPIEAYGIRVADAWKAGRKGVDDGAIILIAKDNPASLRKMRIEVGRG 128 Query: 124 VQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPAKRSSGAVQTD 183 ++G+LTDAQSKR+L+DV+APHFRQ DFYGGL+AG++AI T++ E LPPA+R+ Sbjct: 129 LEGALTDAQSKRVLQDVMAPHFRQGDFYGGLSAGISAIQTVIALESLPPAERAKRQQSGG 188 Query: 184 DGGGWITLMVIGLFLVVFFTVLLKSRRSSRNVLNSNDWGRGGS 226 G W+ ++ L ++VFF VL + RS V S GR GS Sbjct: 189 GIGDWLPVL-FPLAIIVFF-VLSAAMRSGGRVTGSLP-GRPGS 228 >ref|YP_001352293.1| hypothetical protein mma_0603 [Janthinobacterium sp. Marseille] gb|ABR90641.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 274 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 130/242 (53%), Positives = 161/242 (66%), Gaps = 15/242 (6%) Query: 3 KLLLTCWLLAWIALAAPARADDGLVPVPPLSAHVIDQVHLLQPQQRQALEGVLAEIEQRT 62 + LL C L + LA LVPVPPL V D +L +QR LE VLAE E RT Sbjct: 5 RTLLACTLALFCVLAGA----QNLVPVPPLKERVTDLAGMLNAEQRTTLENVLAEYETRT 60 Query: 63 GSQIGVLLMSSTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEAGR 122 G+QI +LL+ ST PE IEQYSIRVA+AWKLGRKGVDDGV+L+VAKDN + RLRIE GR Sbjct: 61 GNQIAILLLKSTEPEGIEQYSIRVADAWKLGRKGVDDGVLLLVAKDNSAASGRLRIETGR 120 Query: 123 GVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLP-PAKRSSGAVQ 181 GVQG LTDAQSKR+L+DVIAPHFRQ DFYGGLA+GV+ IT+LL++E P PAKR + Q Sbjct: 121 GVQGVLTDAQSKRVLQDVIAPHFRQGDFYGGLASGVSVITSLLDKEAFPEPAKRGQASAQ 180 Query: 182 TDDGGGWITLMVIGLFLVVFFTVLLKSR--RSSRNVLNSNDWGRGGSTTAGVIIGSLVDE 239 DD W + + + +L +SR R +R ++ DWG +AGVI+G+ + Sbjct: 181 -DDAFTWGPFIFFAILIF---IMLARSRGGRGARAHSSNGDWG----NSAGVILGTAIGN 232 Query: 240 AL 241 L Sbjct: 233 EL 234