BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4225.p         (197 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776755.1| lipoprotein [Herbaspirillum seropedicae SmR1...   337   4e-91
ref|YP_001352294.1| LemA family protein [Janthinobacterium sp. M...   315   3e-84
ref|YP_001098962.1| LemA family protein [Herminiimonas arsenicox...   312   1e-83
ref|ZP_07675508.1| LemA family protein [Ralstonia sp. 5_7_47FAA]...   298   3e-79
ref|YP_002980532.1| LemA family protein [Ralstonia pickettii 12D...   296   2e-78

>ref|YP_003776755.1| lipoprotein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64847.1| lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 197

 Score =  337 bits (865), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 189/197 (95%), Positives = 196/197 (99%)

Query: 1   MKKLFAWLAIAMTALTLSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60
           MKKLFAWLAIA+TALTLSGCGYN+FQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY
Sbjct: 1   MKKLFAWLAIALTALTLSGCGYNDFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60

Query: 61  ASHEKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQ 120
           A+HEKDTLEAVTRARAAATSFQITPEVLNDPKAFA+FQEVQGQLSSALSRLMAVSENYPQ
Sbjct: 61  AAHEKDTLEAVTRARAAATSFQITPEVLNDPKAFARFQEVQGQLSSALSRLMAVSENYPQ 120

Query: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFT 180
           LKADTSFRDLQSQLEGTENRITVARQRYIAAV+DYNILARSFPTN+TAKLF+YEVKPSFT
Sbjct: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVRDYNILARSFPTNLTAKLFNYEVKPSFT 180

Query: 181 VENEKAISTAPAVNFGK 197
           VENEKAISTAP VNFGK
Sbjct: 181 VENEKAISTAPTVNFGK 197


>ref|YP_001352294.1| LemA family protein [Janthinobacterium sp. Marseille]
 gb|ABR89791.1| LemA family protein [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  315 bits (806), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 166/197 (84%), Positives = 183/197 (92%)

Query: 1   MKKLFAWLAIAMTALTLSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60
           M KLF W++IA+ A TLS CGYN+FQ+KDE+ KAAWGEVVNQYQRRADLIPNLVNTVKGY
Sbjct: 1   MTKLFKWISIALLASTLSACGYNDFQSKDESVKAAWGEVVNQYQRRADLIPNLVNTVKGY 60

Query: 61  ASHEKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQ 120
           A+HE++T EAVT+ARAAATSFQITPEVLN+P+AF KFQ+VQG+LSSALSRLMAVSENYPQ
Sbjct: 61  ATHERETFEAVTKARAAATSFQITPEVLNNPEAFNKFQQVQGELSSALSRLMAVSENYPQ 120

Query: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFT 180
           LKADT+FRDLQSQLEGTENRITVARQRYI AV+DYNILARSFPTNITAK+F Y VKPSFT
Sbjct: 121 LKADTAFRDLQSQLEGTENRITVARQRYIVAVQDYNILARSFPTNITAKVFGYPVKPSFT 180

Query: 181 VENEKAISTAPAVNFGK 197
           VENEKAIS  PAVNF K
Sbjct: 181 VENEKAISAPPAVNFDK 197


>ref|YP_001098962.1| LemA family protein [Herminiimonas arsenicoxydans]
 emb|CAL60835.1| conserved hypothetical protein, putative LemA family protein
           [Herminiimonas arsenicoxydans]
          Length = 197

 Score =  312 bits (800), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 171/197 (86%), Positives = 182/197 (92%)

Query: 1   MKKLFAWLAIAMTALTLSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60
           M  L  WL IA  A  LS CGYN+FQ KDEATKAAW EVVNQYQRRADLIPNLVNTVKGY
Sbjct: 1   MATLLKWLTIAALASMLSACGYNDFQTKDEATKAAWSEVVNQYQRRADLIPNLVNTVKGY 60

Query: 61  ASHEKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQ 120
           ASHE++TLEAVT+ARAAATSFQITPEVLNDP+AFAKFQ+VQG+LSSALSRLMAVSENYPQ
Sbjct: 61  ASHERETLEAVTKARAAATSFQITPEVLNDPQAFAKFQQVQGELSSALSRLMAVSENYPQ 120

Query: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFT 180
           LKADTSFRDLQSQLEGTENRITVARQRYIAAV++YN+LARSFPTNITAK+FSY VKPSFT
Sbjct: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVQEYNVLARSFPTNITAKIFSYPVKPSFT 180

Query: 181 VENEKAISTAPAVNFGK 197
           VENEKAIS  PAVNFGK
Sbjct: 181 VENEKAISAPPAVNFGK 197


>ref|ZP_07675508.1| LemA family protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP66105.1| LemA family protein [Ralstonia sp. 5_7_47FAA]
          Length = 208

 Score =  298 bits (763), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 160/192 (83%), Positives = 174/192 (90%), Gaps = 3/192 (1%)

Query: 7   WLAIAMTALT---LSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGYASH 63
           WL +++  L    LS CGYN+FQAKDEATKAAW EVVNQYQRRADLIPNLVNTVKGYASH
Sbjct: 17  WLTLSLAVLVAPFLSACGYNDFQAKDEATKAAWAEVVNQYQRRADLIPNLVNTVKGYASH 76

Query: 64  EKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQLKA 123
           EKDTLEAVT+ARAAATSFQITPEVLNDP AF KFQ+VQG+LSSALSRLMAVSENYPQLKA
Sbjct: 77  EKDTLEAVTKARAAATSFQITPEVLNDPAAFQKFQQVQGELSSALSRLMAVSENYPQLKA 136

Query: 124 DTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFTVEN 183
           D SFRDLQSQLEGTENRITVARQRYI +V+DYN+L RSFPTN+TAK+  Y+VKP+FTVEN
Sbjct: 137 DQSFRDLQSQLEGTENRITVARQRYIKSVQDYNVLTRSFPTNLTAKVMGYQVKPNFTVEN 196

Query: 184 EKAISTAPAVNF 195
           EK ISTAPAV F
Sbjct: 197 EKGISTAPAVKF 208


>ref|YP_002980532.1| LemA family protein [Ralstonia pickettii 12D]
 gb|ACS61860.1| LemA family protein [Ralstonia pickettii 12D]
          Length = 208

 Score =  296 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/179 (88%), Positives = 169/179 (94%)

Query: 17  LSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGYASHEKDTLEAVTRARA 76
           LS CGYN+FQAKDEATKAAW EVVNQYQRRADLIPNLVNTVKGYASHEKDTLEAVT+ARA
Sbjct: 30  LSACGYNDFQAKDEATKAAWAEVVNQYQRRADLIPNLVNTVKGYASHEKDTLEAVTKARA 89

Query: 77  AATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQLKADTSFRDLQSQLEG 136
           AATSFQITPEVLNDP AF KFQ+VQG+LSSALSRLMAVSENYPQLKAD SFRDLQSQLEG
Sbjct: 90  AATSFQITPEVLNDPAAFQKFQQVQGELSSALSRLMAVSENYPQLKADQSFRDLQSQLEG 149

Query: 137 TENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFTVENEKAISTAPAVNF 195
           TENRITVARQRYI +V+DYN+LARSFPTN+TAK+  Y+VKP+FTVENEK ISTAPAV F
Sbjct: 150 TENRITVARQRYIKSVQDYNVLARSFPTNLTAKVMGYQVKPNFTVENEKGISTAPAVKF 208