BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4217.p (660 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase tra... 921 0.0 ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331] ... 672 0.0 ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9... 603 e-170 gb|AEG70650.1| c4-dicarboxylate transport sensor kinase protein ... 377 e-102 ref|YP_004845950.1| integral membrane sensor signal transduction... 366 9e-99 >ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64839.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 495/601 (82%), Positives = 543/601 (90%), Gaps = 2/601 (0%) Query: 55 MRARRNLLILTVLLATTLLVCGLTYRVALGRAESDQQNQAAAQLQIAALDLESILQKYEA 114 MRARRNLLILT+ L TLLVCG+TYR+AL +AE DQ+ Q AAQLQIAALDLESILQKYEA Sbjct: 1 MRARRNLLILTLFLVATLLVCGITYRLALRKAEVDQKTQGAAQLQIAALDLESILQKYEA 60 Query: 115 LPFALGFQSDVRQVLQHPEDALSVDRLNRAFKTIQQQSRAVNIFMLNRQGVTLASSNWDE 174 LPFALGFQ+DVRQVLQHP+D L+VDRLNRAFKTIQQQS+AV+IFML+R+G+TLASSNWD+ Sbjct: 61 LPFALGFQADVRQVLQHPDDVLAVDRLNRAFKTIQQQSQAVSIFMLDRRGLTLASSNWDD 120 Query: 175 EFSYVGRDFGFRPYFREAIQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM 234 EFS+VGRDFGFRPYF EA+QGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM Sbjct: 121 EFSFVGRDFGFRPYFSEAVQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM 180 Query: 235 VVKVDLAEFEHTWRSSSDPITLTDAGGVVFLSNRPEWKYHSLQALSAPVQRELEGTHQYA 294 VVKVDLAEFEHTWRSS+DPITLTDAGGVVFLSNRPEWKYHSLQALS P+Q+ L GTHQYA Sbjct: 181 VVKVDLAEFEHTWRSSADPITLTDAGGVVFLSNRPEWKYHSLQALSPPMQQALAGTHQYA 240 Query: 295 DLPITPVSTLPPALQRGFGTHVSRPVGRLGWQLMLFPSQARMQRSAMLSAMAAALFMVAL 354 DLPITPVS LPPALQ GFG+HVSRPVGRLGWQLMLFPSQARMQR+AML MA AL M+AL Sbjct: 241 DLPITPVSALPPALQSGFGSHVSRPVGRLGWQLMLFPSQARMQRTAMLWTMACALLMLAL 300 Query: 355 AISLLAWYQHRRRLQERLASRNALRRAAEELDQKIAQRTQELTAANQAIAAKYAKLQQTE 414 AISLLAWYQHRRRL+ER+ASR+ALRRAA EL+Q+IA+RT +LTAANQA+ A+Y KLQQTE Sbjct: 301 AISLLAWYQHRRRLEERMASRDALRRAAAELEQRIAERTGQLTAANQALEARYEKLQQTE 360 Query: 415 SLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAENL 474 SLLRTTQ+ELVQAGKLAMLGQMAAG+THELNQPL AIRAFADN+VKFLARGQ+AQ ENL Sbjct: 361 SLLRTTQNELVQAGKLAMLGQMAAGVTHELNQPLTAIRAFADNAVKFLARGQSAQAVENL 420 Query: 475 EHISHASASMGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVETHIAMP 534 E+IS ASA+MGKII QLKGFARKSG+AVA VDL A+EAS LLAS+ +K I + Sbjct: 421 EYISSASATMGKIIAQLKGFARKSGEAVACVDLSQAIEASSLLLASECQKLGATISIDIR 480 Query: 535 LAVHVTGDAVRTEQVIVNLLRNALDAVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIA 594 A VTGD VRTEQV+VNLLRNALDAVEEA K + V+LEV A++RIRDSG GIA Sbjct: 481 AAACVTGDVVRTEQVLVNLLRNALDAVEEAEHKRIAVVLEVAG--GYALVRIRDSGGGIA 538 Query: 595 DEVVPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKT 654 DEV PHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHE+GGAEFVVRLPLLK Sbjct: 539 DEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEEGGAEFVVRLPLLKM 598 Query: 655 E 655 E Sbjct: 599 E 599 >ref|YP_004752903.1| transporter [Collimonas fungivorans Ter331] gb|AEK62080.1| Transporter [Collimonas fungivorans Ter331] Length = 663 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 369/600 (61%), Positives = 451/600 (75%), Gaps = 9/600 (1%) Query: 55 MRARRNLLILTVLLATTLLVCGLTYRVALGRAESDQQNQAAAQLQIAALDLESILQKYEA 114 +RAR+ L+++ + V TY VA +A SD + QLQI ALDLES+LQK+E Sbjct: 70 LRARKPLVLIVLASVCAAGVVLTTYVVASRKASSDIGEASERQLQIIALDLESVLQKFET 129 Query: 115 LPFALGFQSDVRQVLQHPEDALSVDRLNRAFKTIQQQSRAVNIFMLNRQGVTLASSNWDE 174 LPFALGFQ+DV Q L P+D L++ RLN+ + IQ+QS+ V IFML+R G+TLASSNWD Sbjct: 130 LPFALGFQTDVSQALARPDDKLNIQRLNQTLQLIQRQSKVVAIFMLDRNGLTLASSNWDS 189 Query: 175 EFSYVGRDFGFRPYFREAIQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM 234 + S++GRDFGFRPYF+EAI+G GRFYGIGN ++ PGYFIAQPIY + +GVM Sbjct: 190 DTSFIGRDFGFRPYFKEAIKGNPGRFYGIGNTTNVPGYFIAQPIYASAAAHGENAVLGVM 249 Query: 235 VVKVDLAEFEHTWRSSSDPITLTDAGGVVFLSNRPEWKYHSLQALSAPVQRELEGTHQYA 294 VK+DL EFEHTWRSS DPITL D+ GVVFLSNRPEWKYHSL L+ VQ++L GTHQYA Sbjct: 250 AVKIDLTEFEHTWRSSEDPITLVDSSGVVFLSNRPEWKYHSLYPLNGAVQQDLTGTHQYA 309 Query: 295 DLPITPVSTLPPALQRGFGTHVSRPVGRLGWQLMLFPSQARMQRSAMLSAMAAALFMVAL 354 D ITPVS+LP GFG HV+R +G LGWQLMLFPSQAR+ R A+L +AAAL + Sbjct: 310 DRTITPVSSLPNRESSGFGQHVTRGIGPLGWQLMLFPSQARIARIAILWTLAAALLLAIA 369 Query: 355 AISLLAWYQHRRRLQERLASRNALRRAAEELDQKIAQRTQELTAANQAIAAKYAKLQQTE 414 + L A YQ RRRL+ERL S AE LD+ IAQRTQEL AN + AKYAKLQ+TE Sbjct: 370 GLFLWALYQRRRRLEERLVS-------AEYLDRTIAQRTQELLVANHTLEAKYAKLQETE 422 Query: 415 SLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAENL 474 LLR+TQ++L+QAGKLAMLGQMAAG+ HELNQPLAAIRAFADN++ FL RGQ + ENL Sbjct: 423 HLLRSTQNKLIQAGKLAMLGQMAAGIAHELNQPLAAIRAFADNAMTFLTRGQADKATENL 482 Query: 475 EHISHASASMGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVETHIAMP 534 HIS+AS MGKI+GQL GF+RKS +AVAA+DL ++EA+ LL ++F+ I + Sbjct: 483 GHISNASGRMGKIVGQLNGFSRKSHEAVAAIDLSKSIEAAALLLHNEFQTHGASLQIEIR 542 Query: 535 LAVHVTGDAVRTEQVIVNLLRNALDAVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIA 594 A V GD+VRTEQV++NLLRNALDAV+ A +K V ++LE E +AV+RIRDSG GI Sbjct: 543 QAARVVGDSVRTEQVLINLLRNALDAVDNAEQKTVSLVLE--CEGGEAVIRIRDSGPGIP 600 Query: 595 DEVVPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKT 654 +V HLFEPFFTTK S KGLGLGLAISSSIVQAMNG+L+A+NH GGAEFV+R+PLL+T Sbjct: 601 AQVALHLFEPFFTTKPSGKGLGLGLAISSSIVQAMNGRLTANNHSDGGAEFVLRIPLLET 660 >ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9480] gb|EGF33854.1| Transporter [Oxalobacteraceae bacterium IMCC9480] Length = 604 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 338/589 (57%), Positives = 432/589 (73%), Gaps = 5/589 (0%) Query: 64 LTVLLATTLLVCGLTYRVALGRAESDQQNQAAAQLQIAALDLESILQKYEALPFALGFQS 123 L + +A +LL+ GLTY +A A SD Q+ QLQI ALDL+S+L+K+E LPFAL Sbjct: 14 LWLAVAASLLLVGLTYWLAARMARSDIDRQSERQLQIIALDLQSMLEKFETLPFALSVHP 73 Query: 124 DVRQVLQHPEDALSVDRLNRAFKTIQQQSRAVNIFMLNRQGVTLASSNWDEEFSYVGRDF 183 D+ L P DA +V R+N+ +T+Q+Q+R I++++ QG+T+A+SNW++ +Y+GR+F Sbjct: 74 DLTAALLQPADAATVARVNQTLQTVQRQARVAAIYLMDPQGLTIAASNWNDAQNYIGRNF 133 Query: 184 GFRPYFREAIQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVMVVKVDLAEF 243 GFRPYFR+AI G AGRFYGIG+ +SEPGYFIAQP+ +G P+GV+ VK+ L EF Sbjct: 134 GFRPYFRDAIDGGAGRFYGIGSTTSEPGYFIAQPVLA---NGQGGKPLGVLAVKISLNEF 190 Query: 244 EHTWRSSSDPITLTDAGGVVFLSNRPEWKYHSLQALSAPVQRELEGTHQYADLPITPVST 303 E TW++S +PI L D GVVFL NRP W+YHSL + A +++ T QY ITP+++ Sbjct: 191 ERTWQTSDEPIVLADKDGVVFLGNRPAWQYHSLAPVDAAASEKIKATLQYVGKTITPIAS 250 Query: 304 LPPALQRGFGTHVSRPVGRLGWQLMLFPSQARMQRSAMLSAMAAALFMVALAISLLAWYQ 363 LP A ++G+ V+RPVGRLGWQL LF +Q+R+ R+A+L + A AL M++ +SL A +Q Sbjct: 251 LPAASRKGYDQSVARPVGRLGWQLRLFSAQSRITRTALLWSGAVALVMLSAMLSLWARHQ 310 Query: 364 HRRRLQERLASRNALRRAAEELDQKIAQRTQELTAANQAIAAKYAKLQQTESLLRTTQDE 423 RRRL+ER ASR AL++AAEELD +I RT EL AN+ + KYA+L+ E LLRTTQDE Sbjct: 311 RRRRLEERQASRQALQQAAEELDLQITLRTGELLQANRDLGDKYARLEHAEQLLRTTQDE 370 Query: 424 LVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAENLEHISHASAS 483 LVQAGKLAMLGQMAAG+THELNQPLAAIRAFADN+V FL RGQ AQ + NL HIS ASA Sbjct: 371 LVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVTFLERGQPAQASANLAHISAASAR 430 Query: 484 MGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVETHIAMPLAVHVTGDA 543 MG IIGQLKGFARKS +VA V+L +V AS LL ++F++ V + + + +TGDA Sbjct: 431 MGVIIGQLKGFARKSHGSVALVELTPSVHASALLLQAEFDRLGVVLQLDIAGPLQITGDA 490 Query: 544 VRTEQVIVNLLRNALDAVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIADEVVPHLFE 603 VR EQV++NLLRNALDAVEEAP++ V L V E A++ +RDSG GI D+V LF Sbjct: 491 VRLEQVLINLLRNALDAVEEAPQRHVA--LSVAREGDHALICVRDSGPGIPDDVAAQLFA 548 Query: 604 PFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLL 652 PFFTTK S KGLGLGLAISSSIVQAM GQLSAHN GGAEF +RLPL Sbjct: 549 PFFTTKPSGKGLGLGLAISSSIVQAMRGQLSAHNLPGGGAEFQLRLPLF 597 >gb|AEG70650.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia solanacearum Po82] Length = 635 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 244/625 (39%), Positives = 350/625 (56%), Gaps = 31/625 (4%) Query: 50 DPQECMRAR-RNLLILTVLLATTLLVCGLTYRVALGRAESDQQNQAAAQLQIAALDLESI 108 DP R R L ++A Y +AL + + +A + A +L Sbjct: 9 DPAHVARGSGRRLAAALAMVACCAAAGWGAYALALQHYVAARAEEAGRRTTFYAQNLRGT 68 Query: 109 LQKYEALPFALGFQSDVRQVLQHPE--DALSVDRLNRAFKTIQQQSRAVNIFMLNRQGVT 166 L +YE+LP + + L P DA+ N K +Q + +++++ G T Sbjct: 69 LARYESLPRLAALEHVLHVALTAPHHRDAVLRGAANAYLKEVQIAADLTAVYLMDATGQT 128 Query: 167 LASSNWDEEFSYVGRDFGFRPYFREAIQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAE 226 LA+SNWD+ S++GR++ FRPYF +A++ GRFYG+GN + E GYF+A P+ E Sbjct: 129 LAASNWDQPSSFIGRNYAFRPYFVDAMREGLGRFYGVGNTTGETGYFLAAPV------RE 182 Query: 227 GDLPIGVMVVKVDLAEFEHTWRSSSDPITLTDAGGVVFLSNRPEWKYHSLQALSAPVQRE 286 G+ PIG + VK++L FE T S D + L D GV+FLS+ PEWKY +L L+A Sbjct: 183 GNQPIGAVAVKINLDSFEATLARSGDTVLLVDRHGVIFLSSVPEWKYRTLGTLNAAQHVA 242 Query: 287 LEGTHQYADLPITPVST-----------LPPALQRGF-GTHVS------RPVGRLGWQLM 328 L+ T QY + P+ P L+ G VS RP+G LGWQ+ Sbjct: 243 LDATRQYVPHTLAPLDVRAGGVPFSADLAPQTLRVALPGRSVSTLRVQYRPIGLLGWQVA 302 Query: 329 LFPSQARMQRSAMLSAMAAALFMVALAISLLAWYQHRRRLQERLASRNALRRAAEELDQK 388 + QR+A+++ +AA M L+A RR +E+ ++R ALR +L+ + Sbjct: 303 VLIDPRAEQRTALVAGASAAFAMALAFAVLVALGLRARRHEEQRSARAALREVQRDLEAR 362 Query: 389 IAQRTQELTAANQAIAAKYAKLQQTESLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPL 448 IAQRT ELT+AN A+A+K L T+ +LR T+D VQAGKLA+LGQMAAG+THELNQPL Sbjct: 363 IAQRTVELTSANAALASKVEALDATQRILRETRDAAVQAGKLAVLGQMAAGITHELNQPL 422 Query: 449 AAIRAFADNSVKFLARGQTAQVAENLEHISHASASMGKIIGQLKGFARKSGQAVAAVDLR 508 A+ +DN+ + RG+ +V NL HI + MG+I+ +KGFARK A AAV + Sbjct: 423 TALTTLSDNANQLAERGRIDEVRGNLAHIGQLAHRMGRIVSHIKGFARKGDAARAAVPVE 482 Query: 509 HAVEASLRLLASDFEKQEVETHIAM-PLAVHVTGDAVRTEQVIVNLLRNALDAVEEAPR- 566 A+ +L L+ S + V + + P V V +AVR EQV+VNL+RNA+DA E P+ Sbjct: 483 EAIRQALMLVDSRRRQAGVPVAVGLVPPGVAVWANAVRLEQVLVNLIRNAIDATAEVPQP 542 Query: 567 KCVCVILEVDAERQQAVLRIRDSGAGIADEVVPHLFEPFFTTKSSSKGLGLGLAISSSIV 626 + V + VD + +RD+G GIA +V+PHLFEPFFTTK+ +GLGLGLAIS +IV Sbjct: 543 EAAGVRVTVDVGDALVCITVRDAGPGIAPQVLPHLFEPFFTTKADGQGLGLGLAISLAIV 602 Query: 627 QAMNGQLSAHNHEQ--GGAEFVVRL 649 + G+L N + GGA FV+ L Sbjct: 603 EDFGGRLEGRNADDGAGGAAFVIEL 627 >ref|YP_004845950.1| integral membrane sensor signal transduction histidine kinase [Pseudogulbenkiania sp. NH8B] dbj|BAK75536.1| integral membrane sensor signal transduction histidine kinase [Pseudogulbenkiania sp. NH8B] Length = 624 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 247/598 (41%), Positives = 344/598 (57%), Gaps = 39/598 (6%) Query: 83 LGRAESDQQNQAAAQ-LQIAALDLESILQKYEALPFALGFQSDVRQVLQHPEDALSVDRL 141 L R + Q QA AQ L AL L+++L ++EALP+ L + ++L P DA + Sbjct: 42 LLRGQLAAQRQANAQRLGAYALSLDNLLARHEALPYVLSLDGRLARLLAQPSDAALTAEV 101 Query: 142 NRAFKTIQQQSRAVNIFMLNRQGVTLASSNWDEEFSYVGRDFGFRPYFREAIQGRAGRFY 201 N + +QQ++ F+L+R G TLASSNW S VG + +RPYF++AI GR RFY Sbjct: 102 NHYLEGVQQRAGVAQAFLLDRSGRTLASSNWHSPLSLVGNSYAYRPYFQDAINGRPSRFY 161 Query: 202 GIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVMVVKVDLAEFEHTWRSSSDPITLTDAGG 261 GIG+ + EPG F+A P+ PIGV+VVKV L E W++S D + L D G Sbjct: 162 GIGSTTREPGVFLAAPLPSPTG------PIGVVVVKVKLDSIERAWQASGDHLALADRDG 215 Query: 262 VVFLSNRPEWKYHSLQALSAPVQRELEGTHQYADLPITPVST------------LPPALQ 309 V+FL+ W+YH+L L V+ L QY D P+ P++ LP Sbjct: 216 VLFLATESAWQYHTLAPLPPAVRHRLHAERQYGDYPLPPLAADTALRGHGEQRRLPLGNG 275 Query: 310 RGFGTHVSRPVGRLGWQLMLFPSQARMQRSAMLSAMAAAL---FMVALAISLLAWYQHRR 366 R S P G LGW+++LF A ++SA A A F++AL + W Q RR Sbjct: 276 RRELLVQSHPAGLLGWRVLLFSELAEARQSAAGGAAALGFATAFVLALTVY---WQQRRR 332 Query: 367 RLQERLASRNALRRAAEELDQKIAQRTQELTAANQAIAAKYAKLQQTESLLRTTQDELVQ 426 RL ER A++ LRR L+ +I +RT L AAN + + +L++TES+LR T+D VQ Sbjct: 333 RLAERRAAQAELRRVEAGLETRIVERTAALQAANNTLGQRVEELKRTESILRETRDSAVQ 392 Query: 427 AGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAENLEHISHASASMGK 486 AGKLA+LGQMAAG+THELNQPLAA+ +DN+VK + + + +NL I + +G+ Sbjct: 393 AGKLAVLGQMAAGVTHELNQPLAALNTLSDNAVKLIELARYDEARDNLTLIGQLTGRLGR 452 Query: 487 IIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVETHIAMPLA--VHVTGDAV 544 I+GQLK FAR++ AAV + AVE + L + ++E++ IA +A + D V Sbjct: 453 ILGQLKSFARQAPADTAAVHVAQAVEHA--CLIVEPRRRELDAVIATDIAPELQAWADVV 510 Query: 545 RTEQVIVNLLRNALDAV--EEAPRKCVCVILEVDAERQQAVLR--IRDSGAGIADEVVPH 600 R EQV+VNLLRN LDA+ + APR LE+ A R LR +RD G G+ E + Sbjct: 511 RLEQVLVNLLRNGLDAMAGQAAPR------LELHAVRHGTRLRLTVRDHGPGLPAEALER 564 Query: 601 LFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKTENES 658 LFEPF+TTK + +GLGLGLAIS +IV++ G L+A N + GA F + LP T ES Sbjct: 565 LFEPFYTTKPAGQGLGLGLAISLAIVESFGGTLTAGNADGAGAVFRLDLPAAPTSGES 622