BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4215.p (446 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776746.1| C4-dicarboxylate transport response regulato... 754 0.0 ref|YP_004752901.1| nitrogen regulation protein NR(I) [Collimona... 620 e-175 ref|ZP_08272677.1| putative response regulator of the c4-dicarbo... 589 e-166 ref|YP_003450638.1| hypothetical protein AZL_a05630 [Azospirillu... 497 e-138 gb|EGW61907.1| two component, sigma54 specific, transcriptional ... 484 e-134 >ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64838.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 402/445 (90%), Positives = 415/445 (93%), Gaps = 2/445 (0%) Query: 4 MDNPAAAPSALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVR 63 MD P A SALLIEDEQ VRRATAQALEL GF VTAC SAEEALPL+TRDF GV+V+DVR Sbjct: 1 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVR 60 Query: 64 LPGWSGLQVLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIAL 123 LPG SGL VLA V+ ID DLPVIVVTGHGDV MAVEAMRAGAYDFVEKPF SD+LLEIAL Sbjct: 61 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL 120 Query: 124 RAQEKRSLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGS 183 RAQEKR+LVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTG+ Sbjct: 121 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT 180 Query: 184 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANG 243 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHE GAFTGAQKRRIGKLEYANG Sbjct: 181 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 Query: 244 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQF 303 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKL+AEGQF Sbjct: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 Query: 304 REDLYYRIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDW 363 REDLYYRIGVV+IDLPALNQR DI LLLAHFCQAAAVRYRRE P W+AAQMQQWQQRDW Sbjct: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 Query: 364 PGNVRELRNFADRWVLGVEQIATAGVLPS-PAL-SLPEQVEQFEAGLIAAALKDSEGSVA 421 PGNVRELRNFADRWVLGVEQ+A + V + P L SLPEQVEQFEAGLIAAALKDSEGSVA Sbjct: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 Query: 422 QAAERLGIPKKTLYDKIRKYQLAGS 446 AAERLGIPKKTLYDKIRKYQLAGS Sbjct: 421 VAAERLGIPKKTLYDKIRKYQLAGS 445 >ref|YP_004752901.1| nitrogen regulation protein NR(I) [Collimonas fungivorans Ter331] gb|AEK62078.1| Nitrogen regulation protein NR(I) [Collimonas fungivorans Ter331] Length = 456 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 324/448 (72%), Positives = 374/448 (83%), Gaps = 7/448 (1%) Query: 3 LMDNPAAAPSALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDV 62 +M+ A A+LIEDEQAVR A AQ LEL GFTV AC S E+A L+ F GV+VTDV Sbjct: 1 MMEAGVATLEAVLIEDEQAVREAIAQTLELGGFTVHACDSVEQAQAWLSPGFAGVIVTDV 60 Query: 63 RLPGWSGLQVLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIA 122 RLPG SGL++L V+ +DPDLPVIVVTGHGDVSMAV+AMRAGAYDF+EKPF ++ L+E A Sbjct: 61 RLPGRSGLELLTQVVTLDPDLPVIVVTGHGDVSMAVDAMRAGAYDFIEKPFAAERLMETA 120 Query: 123 LRAQEKRSLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTG 182 RAQEKRSL+LENRRL+ AW P++P L+GQS AIE+VRT+IRS+GP VD+L+NGQTG Sbjct: 121 HRAQEKRSLILENRRLKAAWVAHPDMPSLIGQSAAIEKVRTMIRSVGPTMVDILVNGQTG 180 Query: 183 SGKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAN 242 SGKEVVARQLH ASGRKG FVA+NCGALPE VFESEIFGHEAGAFT AQKRRIGKLEYA Sbjct: 181 SGKEVVARQLHVASGRKGSFVAINCGALPEAVFESEIFGHEAGAFTSAQKRRIGKLEYAK 240 Query: 243 GGTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQ 302 GGT+FLDEIESMPLALQVKLLRVLQER+LERLGGNE +AIDCR++AASKA+LL++SA+G Sbjct: 241 GGTVFLDEIESMPLALQVKLLRVLQERKLERLGGNEPIAIDCRIIAASKANLLQMSAQGS 300 Query: 303 FREDLYYRIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRD 362 FREDLYYRIGVVSIDLP LN+R DIPLLLAHF Q AA+RY+R +P WT AQM QWQ RD Sbjct: 301 FREDLYYRIGVVSIDLPRLNERREDIPLLLAHFIQGAALRYQRPLPQWTLAQMAQWQTRD 360 Query: 363 WPGNVRELRNFADRWVLGV-EQIATAGV-----LPSPALSLPEQVEQFEAGLIAAALKDS 416 WPGNVRELRNFADR VLGV E +A V LPS +SLP+Q++ +E LIA L S Sbjct: 361 WPGNVRELRNFADRLVLGVAEGVADLTVQEGDDLPS-GVSLPQQMDNYERMLIAETLNAS 419 Query: 417 EGSVAQAAERLGIPKKTLYDKIRKYQLA 444 G+VA AA+RLG+PKKTLYDK++KYQLA Sbjct: 420 GGNVAIAADRLGLPKKTLYDKLKKYQLA 447 >ref|ZP_08272677.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33855.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] Length = 444 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 313/431 (72%), Positives = 354/431 (82%), Gaps = 1/431 (0%) Query: 14 LLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQVL 73 +L+EDE A+R AT Q LEL GFTV CASAE+A LL RD+PGVLVTDVRLPG SGLQ+L Sbjct: 7 VLVEDEAALRLATGQTLELGGFTVLPCASAEQADGLLVRDYPGVLVTDVRLPGRSGLQLL 66 Query: 74 AHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSLVL 133 A VM ID DLPV+VVTGHGDV MAVEAMRAGAYDF+EKPF ++ LL RAQEKR LVL Sbjct: 67 AQVMAIDADLPVVVVTGHGDVEMAVEAMRAGAYDFIEKPFAAERLLATVRRAQEKRDLVL 126 Query: 134 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQLH 193 NRRL+ AW P+LPPL+GQS AIERVRTL+ SLGP VDVLINGQTGSGKEVVARQLH Sbjct: 127 ANRRLQAAWLQQPDLPPLLGQSAAIERVRTLVASLGPTSVDVLINGQTGSGKEVVARQLH 186 Query: 194 AASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLFLDEIES 253 AASGRKG FVA+NCGALPE+VFESE+FGHEAGAFT AQKRRIGKLEYA+GGTLFLDEIES Sbjct: 187 AASGRKGHFVAINCGALPESVFESEMFGHEAGAFTSAQKRRIGKLEYADGGTLFLDEIES 246 Query: 254 MPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDLYYRIGV 313 MPL LQ+KLLRVLQER+LERLGGNE V DCRV+AASKADLL+LSA G FREDLYYRI V Sbjct: 247 MPLNLQIKLLRVLQERKLERLGGNEPVPFDCRVIAASKADLLQLSASGAFREDLYYRISV 306 Query: 314 VSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNVRELRNF 373 VSI LP L QR DIPLLLAHF QAAA+R++R VP W+ AQ+ WQ RDWPGNVRELRN Sbjct: 307 VSIGLPRLAQRREDIPLLLAHFVQAAALRHQRPVPLWSTAQLLHWQSRDWPGNVRELRNV 366 Query: 374 ADRWVLGV-EQIATAGVLPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQAAERLGIPKK 432 A+R VLGV E A + L ++ +E+ LI AAL S+ SVA AAERLG+P+K Sbjct: 367 AERLVLGVLEDSAVVEQDDAGTHHLTTLLDAYESMLITAALNASDASVALAAERLGLPRK 426 Query: 433 TLYDKIRKYQL 443 TLYDK++K+++ Sbjct: 427 TLYDKLKKHRI 437 >ref|YP_003450638.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] dbj|BAI74094.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] Length = 451 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 276/441 (62%), Positives = 327/441 (74%), Gaps = 4/441 (0%) Query: 7 PAAAPSALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPG 66 P AA S L ++DE+AVR A QALEL GF VTAC AE AL + RD+PG LVTDVR+P Sbjct: 6 PEAAGSVLFVDDERAVRLAGQQALELAGFEVTACDGAERALRHVARDWPGCLVTDVRMPQ 65 Query: 67 WSGLQVLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQ 126 GL +LA V IDPDLPVI++TGHGDV MAVEAMR GAYDF+EKPF SD L E+A RA Sbjct: 66 MDGLALLARVREIDPDLPVILITGHGDVPMAVEAMRNGAYDFLEKPFPSDRLTEVARRAV 125 Query: 127 EKRSLVLENRRLRE--AWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSG 184 EKR LVLENRRLR A DP +VG++P IER+R I ++ D DVL+ G+TG+G Sbjct: 126 EKRRLVLENRRLRARIAGGSDPA-ETIVGRTPGIERLRATIAAVADTDADVLVFGETGTG 184 Query: 185 KEVVARQLHAASGR-KGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANG 243 KE+VAR LHAASGR K PFVALNCGA+PET+FESE+FGHEAGAFTGA KRRIG++E+A G Sbjct: 185 KEMVARALHAASGRRKNPFVALNCGAMPETIFESELFGHEAGAFTGAAKRRIGRIEHAGG 244 Query: 244 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQF 303 GTLFLDEIESMPLALQVKLLRV+QER +E LG NE V +D RVVAA+KADL + + G+F Sbjct: 245 GTLFLDEIESMPLALQVKLLRVIQERVVEPLGSNEQVPVDLRVVAATKADLRQAADAGKF 304 Query: 304 REDLYYRIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDW 363 R DLYYR+ VV + +P L +R DIPLL HF AA RY RE T QMQ+ +DW Sbjct: 305 RADLYYRLNVVVLTIPPLRERRDDIPLLFQHFVAQAAGRYNREPGTPTREQMQRLIGQDW 364 Query: 364 PGNVRELRNFADRWVLGVEQIATAGVLPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQA 423 PGNVRELRN ADR+VLG+E +A A V LSL EQV+ +E GLI + L GSV A Sbjct: 365 PGNVRELRNAADRFVLGLEDVAPAPVSAPSPLSLAEQVDLYEKGLIQSELARQRGSVKAA 424 Query: 424 AERLGIPKKTLYDKIRKYQLA 444 E L IP+KT YDK+++Y L+ Sbjct: 425 IEALNIPRKTFYDKLKRYGLS 445 >gb|EGW61907.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dechlorosoma suillum PS] Length = 448 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 271/441 (61%), Positives = 335/441 (75%), Gaps = 4/441 (0%) Query: 8 AAAPSALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGW 67 AAA L+ED+ AVR +AQAL L G V + A AE AL L + PG +V+DVRLPG Sbjct: 4 AAALPVFLVEDDPAVRMGSAQALTLAGLEVRSFADAEGALAALAAELPGAVVSDVRLPGR 63 Query: 68 SGLQVLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQE 127 G+ +L + +D +LPVI+VTGHGDV+MAV+AMR GA+DF+EKPF S+ L+ + +A E Sbjct: 64 DGIALLGELRQLDRELPVILVTGHGDVAMAVQAMRDGAHDFIEKPFTSEHLVRVTRQALE 123 Query: 128 KRSLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEV 187 KR+L+LENRRL+EA LP ++GQ+PA++ VR L+ +L P DVD+LING+TGSGKEV Sbjct: 124 KRALLLENRRLKEALPTQDGLP-VIGQTPAMQEVRRLVAALAPTDVDILINGETGSGKEV 182 Query: 188 VARQLHAASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLF 247 VAR +H+ASGR+GPFVA+NC ALPE+VFESE+FGHEAGAFTGA KRRIGK+EYA+GGTLF Sbjct: 183 VARAIHSASGRRGPFVAINCAALPESVFESEMFGHEAGAFTGAGKRRIGKIEYAHGGTLF 242 Query: 248 LDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDL 307 LDEIESMPL LQVKLLR LQER +ERLGGN VA+DCRVVAASKADL LS GQFR DL Sbjct: 243 LDEIESMPLNLQVKLLRALQERSIERLGGNAPVAVDCRVVAASKADLKALSEAGQFRADL 302 Query: 308 YYRIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNV 367 YYR+ VVSIDLP L +R DIPLL+ HF Q AA R+ REVP W A++ +WQ + WPGNV Sbjct: 303 YYRLNVVSIDLPPLRRRQEDIPLLMGHFLQQAAKRFGREVPAWGPAELARWQAQPWPGNV 362 Query: 368 RELRNFADRWVLGVEQ---IATAGVLPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQAA 424 REL+N A+R+ LG++Q + AG P L L ++E E G I AAL G+VA AA Sbjct: 363 RELKNAAERFCLGLDQPQAASPAGSAPGAELPLARRLELAEQGFIEAALAACHGNVALAA 422 Query: 425 ERLGIPKKTLYDKIRKYQLAG 445 ERL +PKKTLYDK+ + Q+A Sbjct: 423 ERLQLPKKTLYDKLARLQIAA 443