BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4214.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776745.1| lipoprotein [Herbaspirillum seropedicae SmR1... 298 4e-79 ref|YP_524795.1| hypothetical protein Rfer_3560 [Rhodoferax ferr... 241 4e-62 ref|ZP_03826784.1| putative lipoprotein [Pectobacterium carotovo... 238 3e-61 emb|CBJ40293.1| putative lipoprotein [Ralstonia solanacearum CMR15] 237 9e-61 ref|ZP_03832585.1| putative lipoprotein [Pectobacterium carotovo... 236 1e-60 >ref|YP_003776745.1| lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ64837.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 164/221 (74%), Positives = 194/221 (87%), Gaps = 1/221 (0%) Query: 1 MMLDKFKALGAVLLALLASGCATK-QKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGM 59 M+ K K L A +L LLA+GCAT+ QKPYDYAEFKAARPASILVLPP+N+SSEVIAPYG+ Sbjct: 1 MIAGKCKVLAAAMLVLLATGCATQPQKPYDYAEFKAARPASILVLPPVNTSSEVIAPYGV 60 Query: 60 LAQATQPLAESGYYVIPVSLAAETFKQNGLANAADIHEVPVKKLREIFGADAGLYINITD 119 LAQAT+PLAESGYYVIPVSLAA TF+QNGL+N +IHE+P KLREIFGADA LYI IT Sbjct: 61 LAQATEPLAESGYYVIPVSLAAATFRQNGLSNPDEIHELPAPKLREIFGADAALYIKITR 120 Query: 120 YGTSYKVVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQNNGLLGVLLSAVVNQ 179 YGTSY+VVQS+T+V+A+A+LVDLRSGK LW+GSA ASS E +Q +NGL+G+L+SAV+NQ Sbjct: 121 YGTSYQVVQSETLVAAEARLVDLRSGKLLWEGSARASSLEQQQQNSNGLIGMLVSAVINQ 180 Query: 180 IISTTTDASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 220 I++TT+DASYKMA + S RLLRAG NGLL+GPRSPQYQKD Sbjct: 181 IVNTTSDASYKMAGIASQRLLRAGNPNGLLHGPRSPQYQKD 221 >ref|YP_524795.1| hypothetical protein Rfer_3560 [Rhodoferax ferrireducens T118] gb|ABD71264.1| protein of unknown function DUF799 [Rhodoferax ferrireducens T118] Length = 221 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 121/215 (56%), Positives = 161/215 (74%) Query: 6 FKALGAVLLALLASGCATKQKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGMLAQATQ 65 FK L L+ +GCATK P+DY +K +RP SIL+LPP+N++ EV A Y +L+ AT+ Sbjct: 7 FKVLAVTASFLVMTGCATKAPPFDYTAYKESRPRSILILPPVNNTPEVQASYSVLSHATR 66 Query: 66 PLAESGYYVIPVSLAAETFKQNGLANAADIHEVPVKKLREIFGADAGLYINITDYGTSYK 125 PLAE+GYYV+PV+L AE FK+NG+ A D+H PV KLR+IFGADA LYI I YGT Y+ Sbjct: 67 PLAEAGYYVMPVTLVAEAFKENGMTQATDMHATPVDKLRQIFGADAALYITIGKYGTVYQ 126 Query: 126 VVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQNNGLLGVLLSAVVNQIISTTT 185 V+ S +VVSA+AKLVDL++GK LW G+ASASS EGR Q GL G+L++A++ Q+++T Sbjct: 127 VISSASVVSAEAKLVDLKTGKLLWTGAASASSEEGRSQQQGGLAGLLITAIIKQVMATAL 186 Query: 186 DASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 220 D S+++A V + RLL AG NG+LYGPRSP Y K+ Sbjct: 187 DQSHQVAGVATTRLLSAGTANGMLYGPRSPNYDKN 221 >ref|ZP_03826784.1| putative lipoprotein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 219 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 124/218 (56%), Positives = 163/218 (74%), Gaps = 1/218 (0%) Query: 3 LDKFKALGAVLLALLASGCATKQKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGMLAQ 62 +++F L ++ AL+ +GCA K PYDY FK ++P SILVLPP+N S +V A Y +L+Q Sbjct: 1 MNRFLGLCGLVFALVLTGCA-KPVPYDYTAFKQSKPKSILVLPPVNHSPDVKASYSLLSQ 59 Query: 63 ATQPLAESGYYVIPVSLAAETFKQNGLANAADIHEVPVKKLREIFGADAGLYINITDYGT 122 T PLAESGYYV+PV++ ETFKQNGL+ AADIH + KL +IFGADA LY+++ +YGT Sbjct: 60 VTYPLAESGYYVLPVAVVDETFKQNGLSTAADIHALSTAKLHQIFGADAALYLDVKEYGT 119 Query: 123 SYKVVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQNNGLLGVLLSAVVNQIIS 182 SY V+ S+T VSADA+LVDLR+GK LW GSA+ASS E + N N G++G+L+ A VNQI Sbjct: 120 SYIVINSETRVSADARLVDLRTGKLLWSGSATASSNEQQSNSNGGIIGILVQAAVNQIAD 179 Query: 183 TTTDASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 220 T +D + +A VTS RLL AG + G+LYGPRS QY K+ Sbjct: 180 TISDKGHDVAGVTSARLLAAGHSRGMLYGPRSLQYGKE 217 >emb|CBJ40293.1| putative lipoprotein [Ralstonia solanacearum CMR15] Length = 223 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 127/218 (58%), Positives = 159/218 (72%), Gaps = 3/218 (1%) Query: 6 FKALGAVLLALLASGCATKQKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGMLAQATQ 65 K A+ + L +GCAT+ K DY FKA++P SI+VLPP+N S +V A YGML+Q T Sbjct: 6 LKLFAAIGVVALMAGCATRAKHVDYTAFKASKPHSIVVLPPLNQSPDVKATYGMLSQVTM 65 Query: 66 PLAESGYYVIPVSLAAETFKQNGLANAADIHEVPVKKLREIFGADAGLYINITDYGTSYK 125 PLAE+GYYV+PV+L ETF+QNGL A DIH VPV KLR+IFGADA LY+ IT YGT Y Sbjct: 66 PLAEAGYYVLPVALVDETFRQNGLTTAGDIHGVPVAKLRDIFGADAALYVTITQYGTKYM 125 Query: 126 VVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQN---NGLLGVLLSAVVNQIIS 182 ++ S TVV+ADAKLVDL+SG+TLW G ASASS E + + G++GVL+SA V QI++ Sbjct: 126 LIDSVTVVAADAKLVDLKSGETLWTGHASASSKETGNSVDVNAGGIIGVLVSAAVKQIVN 185 Query: 183 TTTDASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 220 T D+ Y +A TS RLL AG + GLLYGPRSP+Y D Sbjct: 186 TAIDSGYSVAGATSARLLSAGPHGGLLYGPRSPKYGTD 223 >ref|ZP_03832585.1| putative lipoprotein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 219 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 124/218 (56%), Positives = 161/218 (73%), Gaps = 1/218 (0%) Query: 3 LDKFKALGAVLLALLASGCATKQKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGMLAQ 62 +++F L ++ AL +GCA K PYDY FK ++P SILVLPP+N S +V A Y +L+Q Sbjct: 1 MNRFLGLCGLVFALALTGCA-KPVPYDYTAFKQSKPKSILVLPPVNHSPDVKASYSLLSQ 59 Query: 63 ATQPLAESGYYVIPVSLAAETFKQNGLANAADIHEVPVKKLREIFGADAGLYINITDYGT 122 T PLAESGYYV+PV++ ETFKQNGL+ AADIH + KL +IFGADA LY+++ +YGT Sbjct: 60 VTYPLAESGYYVLPVAVVDETFKQNGLSTAADIHALSTAKLHQIFGADAALYLDVKEYGT 119 Query: 123 SYKVVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQNNGLLGVLLSAVVNQIIS 182 SY V+ S+T VSADA+LVDLR+GK LW GSA+ASS E + N N G++G+L+ A VNQI Sbjct: 120 SYIVINSETRVSADARLVDLRTGKLLWSGSATASSNEQQSNSNGGIIGILVQAAVNQIAD 179 Query: 183 TTTDASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 220 T +D + +A VTS RLL AG G+LYGPRS QY K+ Sbjct: 180 TISDKGHDVAGVTSARLLAAGNPRGMLYGPRSLQYGKE 217