BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4209.p (148 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776740.1| MerR family transcription regulator protein ... 201 2e-50 ref|YP_004752187.1| MerR family transcriptional regulator [Colli... 129 1e-28 ref|YP_001900042.1| MerR family transcriptional regulator [Ralst... 119 2e-25 ref|ZP_00946554.1| Hypothetical Protein RRSL_00602 [Ralstonia so... 117 6e-25 gb|AEG68459.1| heavy metal-dependent transcriptional regulator [... 117 7e-25 >ref|YP_003776740.1| MerR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64832.1| MerR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 144 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 121/147 (82%), Positives = 127/147 (86%), Gaps = 4/147 (2%) Query: 1 MTTSLTIAQAADATGLSVHTLRYYERIGLLDPVERRDNRHRRYTQEDLNWIDFLKKLKAT 60 MTTSLTIAQAA ATGLSVHTLRYYERIGLLDPVERRDN HRRYTQEDL+WI FLKKLKAT Sbjct: 1 MTTSLTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLDWIAFLKKLKAT 60 Query: 61 GLPVRAMLRYAELRREGNTLESVRERKAMLQAHTLCVQHTLAELQENLAVLQRKLVLYDE 120 GLPVRAMLRYAELRR GNT+ESV +RKA+LQAHTLCVQHTLAELQENLAVLQ KLVLY+ Sbjct: 61 GLPVRAMLRYAELRRAGNTVESVSQRKALLQAHTLCVQHTLAELQENLAVLQHKLVLYEA 120 Query: 121 LEQDARAEPAHALPSSKADAPHPERMA 147 LEQ A A A + A HPERMA Sbjct: 121 LEQQASA----AGRDTAASTSHPERMA 143 >ref|YP_004752187.1| MerR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61364.1| Transcriptional regulator, MerR family [Collimonas fungivorans Ter331] Length = 131 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 77/127 (60%), Positives = 99/127 (77%) Query: 1 MTTSLTIAQAADATGLSVHTLRYYERIGLLDPVERRDNRHRRYTQEDLNWIDFLKKLKAT 60 M TS+TI QAA ATGLS+HTLRYYE+IGL+DPV R+ N+HR Y QEDLNWI FL +L+AT Sbjct: 1 MATSITIQQAATATGLSIHTLRYYEKIGLIDPVPRQSNQHRLYRQEDLNWIAFLLRLRAT 60 Query: 61 GLPVRAMLRYAELRREGNTLESVRERKAMLQAHTLCVQHTLAELQENLAVLQRKLVLYDE 120 G+ ++ MLRYAELRR G+ L SV ERKA+L+ HT+ ++ L ELQE L +L+ K+ LY Sbjct: 61 GMSIQQMLRYAELRRRGDRLASVSERKALLEQHTVALEAELLELQETLGMLRDKVALYAR 120 Query: 121 LEQDARA 127 +EQ +A Sbjct: 121 MEQQLQA 127 >ref|YP_001900042.1| MerR family transcriptional regulator [Ralstonia pickettii 12J] ref|ZP_07676400.1| transcriptional regulator, MerR family [Ralstonia sp. 5_7_47FAA] gb|ACD27610.1| transcriptional regulator, MerR family [Ralstonia pickettii 12J] gb|EFP65304.1| transcriptional regulator, MerR family [Ralstonia sp. 5_7_47FAA] Length = 185 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 1/149 (0%) Query: 1 MTTSLTIAQAADATGLSVHTLRYYERIGLLDPVERRDNRHRRYTQEDLNWIDFLKKLKAT 60 MTT LTIAQ A+ATGLS HTLRYYERIGLLD V+RRDN HR + ED+ W++FL +L+ T Sbjct: 1 MTTFLTIAQVAEATGLSTHTLRYYERIGLLDSVQRRDNGHRVFRAEDMTWLEFLLRLRDT 60 Query: 61 GLPVRAMLRYAELRREGNTLESVRERKAMLQAHTLCVQHTLAELQENLAVLQRKLVLYDE 120 G+P+ M YA LRR+G++L+SV R+ +L+ H ++ L E LAVL+ KLV+YD Sbjct: 61 GMPIAQMQAYAALRRQGDSLDSVSARQRLLELHAAALEAELRARAETLAVLRVKLVVYDG 120 Query: 121 LEQDAR-AEPAHALPSSKADAPHPERMAP 148 + AE A S + H + P Sbjct: 121 IRARIEAAEGAKGSASPSVKSKHQPKRQP 149 >ref|ZP_00946554.1| Hypothetical Protein RRSL_00602 [Ralstonia solanacearum UW551] ref|YP_002260268.1| hypothetical protein RSIPO_02063 [Ralstonia solanacearum IPO1609] gb|EAP70957.1| Hypothetical Protein RRSL_00602 [Ralstonia solanacearum UW551] emb|CAQ35858.1| hypothetical protein RSMK01154 [Ralstonia solanacearum MolK2] emb|CAQ62203.1| hypothetical protein RSIPO_02063 [Ralstonia solanacearum IPO1609] Length = 185 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 4/152 (2%) Query: 1 MTTSLTIAQAADATGLSVHTLRYYERIGLLDPVERRDNRHRRYTQEDLNWIDFLKKLKAT 60 MT LTI QAA+ATGLS HTLRYYERIGLLD VERR N HR + D+ W+ FL +L+ T Sbjct: 10 MTAFLTIRQAAEATGLSTHTLRYYERIGLLDSVERRGNGHRVFRAADMAWLAFLLRLRET 69 Query: 61 GLPVRAMLRYAELRREGNTLESVRERKAMLQAHTLCVQHTLAELQENLAVLQRKLVLYDE 120 G+P+ M +YA RR+G+TLESV R+ +L+ H + ++ L E LAVL+ KLV+YD Sbjct: 70 GMPIAQMQQYAAQRRQGDTLESVSARRRLLELHAVALEAELRARAETLAVLRDKLVIYDG 129 Query: 121 LEQDARAEPAHALPS----SKADAPHPERMAP 148 + A A S + DA P+R P Sbjct: 130 IRARLEAAQGSASASQPQPTTEDAHEPDRTTP 161 >gb|AEG68459.1| heavy metal-dependent transcriptional regulator [Ralstonia solanacearum Po82] Length = 176 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 75/143 (52%), Positives = 97/143 (67%), Gaps = 4/143 (2%) Query: 1 MTTSLTIAQAADATGLSVHTLRYYERIGLLDPVERRDNRHRRYTQEDLNWIDFLKKLKAT 60 MTT LTI QAA+ATGLS HTLRYYERIGLLD VERR N HR + D+ W+ FL +L+ T Sbjct: 1 MTTFLTIRQAAEATGLSTHTLRYYERIGLLDSVERRGNGHRVFRAADMAWLAFLLRLRET 60 Query: 61 GLPVRAMLRYAELRREGNTLESVRERKAMLQAHTLCVQHTLAELQENLAVLQRKLVLYDE 120 G+P+ M +YA RR+G+TLESV R+ +L++H + ++ L E LAVL+ KLV+YD Sbjct: 61 GMPIAQMQQYAAQRRQGDTLESVSVRRRLLESHAVALEAELRARAETLAVLRDKLVIYDG 120 Query: 121 LEQDARAEPAHALPSSKADAPHP 143 + AR E A S+ A P P Sbjct: 121 IR--ARLEAAQG--SASASQPQP 139