BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4206.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776737.1| LysR family transcription regulator protein ... 499 e-139 ref|YP_986567.1| LysR family transcriptional regulator [Acidovor... 385 e-105 ref|YP_002552989.1| LysR family transcriptional regulator [Acido... 384 e-105 ref|ZP_04762664.1| transcriptional regulator, LysR family [Acido... 379 e-103 ref|YP_004752032.1| LysR family transcriptional regulator [Colli... 377 e-103 >ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64829.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 279/287 (97%), Positives = 282/287 (98%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGV LFRRLPRGLALT Sbjct: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT 60 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLR+FQQQHPFV Sbjct: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV 120 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPAIAARLRSPADL 180 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGT+AERLFEAPLAPMCAPAIAARLRSPADL Sbjct: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRSPADL 180 Query: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVQMLERE 240 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPV M ERE Sbjct: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVLMFERE 240 Query: 241 LRQGRLVCPFEQRIVLGAYWLTSLKSRPQTAAMAAFRTWLQSHAGAM 287 L+QGRLVCPF QRIVLGAYWLTSLKSRPQTAAMAAFR WLQSHAGAM Sbjct: 241 LQQGRLVCPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGAM 287 >ref|YP_986567.1| LysR family transcriptional regulator [Acidovorax sp. JS42] gb|ABM42491.1| transcriptional regulator, LysR family [Acidovorax sp. JS42] Length = 288 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 209/280 (74%), Positives = 229/280 (81%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 M+LPLNALRAFE +ARHL+ TRAAEEL VTQTAVS ++NLE+R+G LFRRLPRGLALT Sbjct: 1 MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 DEG L+PV++ SF RI L + D R REVLTVGVVGTFAVGWL+PRLR F + HPFV Sbjct: 61 DEGRQLVPVLSDSFARIGQALQRLADTRPREVLTVGVVGTFAVGWLLPRLRAFHESHPFV 120 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPAIAARLRSPADL 180 DLRLLT+NNRVDLAGEGLD AIRFGDGAWHGT+AERL APLAP+CAP +AARLR PADL Sbjct: 121 DLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAERLMPAPLAPLCAPEVAARLREPADL 180 Query: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVQMLERE 240 GAE LLRSYR+DEW WF AAGA CP LRG VFDSSL LAEAAAQ AGVALLPV+M ERE Sbjct: 181 GAEALLRSYRADEWPAWFTAAGAPCPVLRGAVFDSSLTLAEAAAQGAGVALLPVRMFERE 240 Query: 241 LRQGRLVCPFEQRIVLGAYWLTSLKSRPQTAAMAAFRTWL 280 LRQGRLV PF LG YWL LKSR T A+ AFR WL Sbjct: 241 LRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWL 280 >ref|YP_002552989.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY] gb|ACM32989.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY] Length = 288 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 209/280 (74%), Positives = 229/280 (81%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 M+LPLNALRAFE +ARHL+ TRAAEEL VTQTAVS ++NLE+R+G LFRRLPRGLALT Sbjct: 1 MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 DEG L+PV++ SF RI L + D R REVLTVGVVGTFAVGWL+PRLR F + HPFV Sbjct: 61 DEGRQLVPVLSDSFARIGQALQRLADTRPREVLTVGVVGTFAVGWLLPRLRAFHESHPFV 120 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPAIAARLRSPADL 180 DLRLLT+NNRVDLAGEGLD AIRFGDGAWHGT+AERL APLAP+CAP +AARLR PADL Sbjct: 121 DLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAERLMPAPLAPLCAPEVAARLREPADL 180 Query: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVQMLERE 240 GAE LLRSYR+DEW WFAAA A CP LRG VFDSSL LAEAAAQ AGVALLPV+M ERE Sbjct: 181 GAEALLRSYRTDEWPAWFAAAHAPCPVLRGAVFDSSLTLAEAAAQGAGVALLPVRMFERE 240 Query: 241 LRQGRLVCPFEQRIVLGAYWLTSLKSRPQTAAMAAFRTWL 280 LRQGRLV PF LG YWL LKSR T A+ AFR WL Sbjct: 241 LRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWL 280 >ref|ZP_04762664.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gb|EER60514.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 289 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 205/280 (73%), Positives = 228/280 (81%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 M+LPLNALRAFEV+ARHL+ TRAA EL+V+QTAVS ++NLE+RLG LFRRLPRGLALT Sbjct: 1 MHLPLNALRAFEVAARHLNLTRAASELNVSQTAVSQHIRNLEERLGQPLFRRLPRGLALT 60 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 DEG ALLP + +SFGRI+ L QF R REVLTVG VGTF VGWL+PRLREFQQ PFV Sbjct: 61 DEGRALLPALEESFGRISAALEQFSQSRPREVLTVGAVGTFTVGWLLPRLREFQQACPFV 120 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPAIAARLRSPADL 180 DLRLLT+NNRVD+AGEGLDYAIRFGDGAWHGTEAE L APL+ MC P +AARLR PADL Sbjct: 121 DLRLLTHNNRVDIAGEGLDYAIRFGDGAWHGTEAELLMPAPLSVMCTPELAARLRVPADL 180 Query: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVQMLERE 240 + LLRSYR+DEW WFAAAG CP +RG VFDSSL +AEAAAQ AGVALLPV M RE Sbjct: 181 AHQPLLRSYRADEWEDWFAAAGVRCPVVRGVVFDSSLTMAEAAAQGAGVALLPVCMFTRE 240 Query: 241 LRQGRLVCPFEQRIVLGAYWLTSLKSRPQTAAMAAFRTWL 280 L+ GRL PF + G+YWLT LKSRP TAAMAAFR WL Sbjct: 241 LQHGRLARPFAAELHQGSYWLTRLKSRPPTAAMAAFRGWL 280 >ref|YP_004752032.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61209.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 293 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 209/281 (74%), Positives = 233/281 (82%), Gaps = 1/281 (0%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 M+LPLN+LRAFEVSAR LSFTRAA EL+VTQ A+S QVKNLE+R+GV LFRRLPRGLALT Sbjct: 8 MHLPLNSLRAFEVSARLLSFTRAASELNVTQAAISQQVKNLEERMGVQLFRRLPRGLALT 67 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRR-REVLTVGVVGTFAVGWLMPRLREFQQQHPF 119 DEG+ALLPV+A+SFGRI VL QF DGRR REVLTVG VGTFAVGWL+PRLR+FQQ HPF Sbjct: 68 DEGIALLPVLAESFGRIGAVLQQFGDGRRLREVLTVGAVGTFAVGWLIPRLRDFQQAHPF 127 Query: 120 VDLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPAIAARLRSPAD 179 VD RL TNNNRVD+AGEGLDYAIRFGDGAWH TEAE L APL+PMC+PA+A+ LR PAD Sbjct: 128 VDFRLFTNNNRVDIAGEGLDYAIRFGDGAWHSTEAEELLAAPLSPMCSPAVASFLRDPAD 187 Query: 180 LGAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVQMLER 239 L + LLRSYR+DEW WFAAA CP LRG VFDSSL +AEAAAQ AGVALLP +M R Sbjct: 188 LAGQILLRSYRTDEWAAWFAAAALPCPLLRGTVFDSSLTMAEAAAQGAGVALLPARMFAR 247 Query: 240 ELRQGRLVCPFEQRIVLGAYWLTSLKSRPQTAAMAAFRTWL 280 EL+ GRL PF+ I G+YWLT LKS+ T AM AFR WL Sbjct: 248 ELQHGRLTRPFDIEIASGSYWLTRLKSKQATPAMQAFREWL 288