BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4204.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776734.1| transmembrane protein [Herbaspirillum serope... 492 e-137 ref|YP_001099299.1| hypothetical protein HEAR0990 [Herminiimonas... 384 e-104 ref|YP_001352818.1| hypothetical protein mma_1128 [Janthinobacte... 356 5e-96 ref|YP_002980513.1| hypothetical protein Rpic12D_0536 [Ralstonia... 291 2e-76 ref|YP_001898163.1| hypothetical protein Rpic_0580 [Ralstonia pi... 289 6e-76 >ref|YP_003776734.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64826.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 363 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 271/373 (72%), Positives = 311/373 (83%), Gaps = 10/373 (2%) Query: 47 MNDHSDLPESSLPSPSVPAAPGNFATALRDSADHSAPQAFTFSGRGSEYFRIWIVNLLLS 106 MN+ SDLP + P F+T L ++A P+AF+FSGRG EYFRIWIVNLLLS Sbjct: 1 MNEPSDLPSQATPP---------FSTVL-NTAAPVKPEAFSFSGRGGEYFRIWIVNLLLS 50 Query: 107 IVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPVAILKGRILAVVLIVVYQIAGYIN 166 IVTLGIYSAWAKVRRLRYFYDNTSVAG SFDYHGNP+AILKGRI+AVVL+ VY AG + Sbjct: 51 IVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLAVYNFAGAAS 110 Query: 167 LLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRFGFRGSFGGAFKNFLLWPMMSGFS 226 LLGL AAL L+LA PWL+WRSLQFKLYNTSYRGIRFGFRGS GGA +NFL+WPM++ S Sbjct: 111 PLLGLAAALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGAARNFLMWPMLASIS 170 Query: 227 LGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFYLAFAAGIGGWIAGSVLIVVGFGG 286 LGLL P+A QRFKR+QH+EARFGATHFSFHGSVGAFY F G+G W+ G ++I VGFGG Sbjct: 171 LGLLAPLAYQRFKRYQHSEARFGATHFSFHGSVGAFYKTFLIGLGLWLGGIIVIFVGFGG 230 Query: 287 VALFQSVQSGAGSIAAFGLMLFALYAWSFLIIPLWITLLQNLVWNNTRLGEHRFESRMRW 346 + L Q V +G ++ + LM+ ALYAW+FL +PLW+TLLQNLVWNNTRLGEHRF+S MRW Sbjct: 231 ITLIQMVHAGTTAVFSLMLMVLALYAWTFLALPLWMTLLQNLVWNNTRLGEHRFQSDMRW 290 Query: 347 GRTAIILLTNVLGIAFTLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATG 406 GRTA I+ TNVLG+ FTLGL+TPFAQIRMMRYRIES+TLLPA SLDDF+ASSE+ GSATG Sbjct: 291 GRTAFIVFTNVLGVVFTLGLYTPFAQIRMMRYRIESLTLLPASSLDDFVASSEAHGSATG 350 Query: 407 EGLGDLLDFDLSM 419 EGLGDLLDFDLSM Sbjct: 351 EGLGDLLDFDLSM 363 >ref|YP_001099299.1| hypothetical protein HEAR0990 [Herminiimonas arsenicoxydans] emb|CAL61172.1| conserved hypothetical protein; putative membrane protein [Herminiimonas arsenicoxydans] Length = 361 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 198/344 (57%), Positives = 261/344 (75%), Gaps = 7/344 (2%) Query: 83 PQAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNP 142 P F+FSG GSEYFRIWIVNLLLSIVTLGIYSAWAKVRR +YFY++TSVAG+SF+YHGNP Sbjct: 18 PLRFSFSGSGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRSKYFYNSTSVAGSSFEYHGNP 77 Query: 143 VAILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIR 202 VAILKGRI+AV++IV+Y +A ++ L GL+ +A+ L +PWLIW+SLQFKLYN+SYRGIR Sbjct: 78 VAILKGRIVAVIMIVIYNLAFEMSGLTGLLIIIAMALLAPWLIWKSLQFKLYNSSYRGIR 137 Query: 203 FGFRGSFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAF 262 FGF G+ + +L +P+++ +L LL+P A QR K+FQH E+RFGA+HFSF G+VG+F Sbjct: 138 FGFAGTLSRVYTVYLAFPILAALTLSLLLPFAHQRMKKFQHEESRFGASHFSFTGTVGSF 197 Query: 263 YLAFAAGIGGWIAGSVLIVVGFGGVAL-------FQSVQSGAGSIAAFGLMLFALYAWSF 315 Y A+ W+AG + I + GG ++SG+ + A + + ALY W F Sbjct: 198 YKAYLLVFIIWLAGCIAISLALGGTLFSMIAAGGMSHIESGSAGMLAITVFILALYVWMF 257 Query: 316 LIIPLWITLLQNLVWNNTRLGEHRFESRMRWGRTAIILLTNVLGIAFTLGLFTPFAQIRM 375 LI P++ TL+QNL+WNNTRL +H+F S M+WG A I +TN++ I TLGLF PFAQIR Sbjct: 258 LIFPIFATLIQNLIWNNTRLDQHQFHSNMKWGTMAFIAVTNIIAIICTLGLFLPFAQIRA 317 Query: 376 MRYRIESVTLLPAGSLDDFIASSESPGSATGEGLGDLLDFDLSM 419 MRYR++S++L P GSLD FIA++++ SATGEG+ DLLDFDLS+ Sbjct: 318 MRYRVQSMSLTPDGSLDHFIAATQAQVSATGEGVADLLDFDLSL 361 >ref|YP_001352818.1| hypothetical protein mma_1128 [Janthinobacterium sp. Marseille] gb|ABR89511.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 429 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 200/352 (56%), Positives = 254/352 (72%), Gaps = 9/352 (2%) Query: 76 DSADHSAPQAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGAS 135 +S P F+FSG GSEYFRIWIVNLL SI+TLGIYSAWAKVRR RYFY +TSVAG S Sbjct: 79 NSHPSDTPIRFSFSGTGSEYFRIWIVNLLFSILTLGIYSAWAKVRRTRYFYGSTSVAGTS 138 Query: 136 FDYHGNPVAILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYN 195 F+YHGNPVAILKGRI+AV+LI++Y IA ++ L+GL+ L +M +PWLIW+SLQFKLYN Sbjct: 139 FEYHGNPVAILKGRIIAVLLIIIYNIAFEMSDLIGLLMLLLVMALTPWLIWKSLQFKLYN 198 Query: 196 TSYRGIRFGFRGSFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKRFQHNEARFGATHFSF 255 +SYRGIRFGFRG+ + +L P+++ S LL P QR K+FQH E+RFG +HFSF Sbjct: 199 SSYRGIRFGFRGALKQIYWVYLALPILTMLSAFLLTPFTHQRVKKFQHQESRFGTSHFSF 258 Query: 256 HGSVGAFYLAFAAGIGGWIAGSVLIVVGFGGVALFQSVQSGA--------GSIAAFGLML 307 GSVG+FYLA+ W+ G + I V GG +LF + + A L L Sbjct: 259 SGSVGSFYLAYLLVFVIWLVGVIAISVTLGG-SLFAIITADVMDREAASAAGAAGIVLFL 317 Query: 308 FALYAWSFLIIPLWITLLQNLVWNNTRLGEHRFESRMRWGRTAIILLTNVLGIAFTLGLF 367 LY W FL+ P++ TL+QNL+WN+T+LG+HRF S M+W R A I +TN++GI TLGLF Sbjct: 318 GVLYVWMFLLFPIFATLIQNLIWNHTQLGQHRFLSDMKWTRMAFITITNIIGIICTLGLF 377 Query: 368 TPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATGEGLGDLLDFDLSM 419 PFAQIR M+YR+E + L P GSL++FIA+S+ SATGEG+ DLLDFDLS+ Sbjct: 378 LPFAQIRAMKYRVECMALQPNGSLENFIAASQQQVSATGEGVADLLDFDLSL 429 >ref|YP_002980513.1| hypothetical protein Rpic12D_0536 [Ralstonia pickettii 12D] gb|ACS61841.1| protein of unknown function DUF898 transmembrane [Ralstonia pickettii 12D] Length = 360 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 226/361 (62%), Gaps = 10/361 (2%) Query: 61 PSVPAAPGNFATALRDSADHSAPQAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVR 120 P + +APG +A P F+G GSEYFRIWIVNLLL+IVTLGIYSAWAKVR Sbjct: 8 PVLGSAPGG------PTAAAPQPLRLRFTGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVR 61 Query: 121 RLRYFYDNTSVAGASFDYHGNPVAILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLA 180 L+YFY NT +AG+SFDYHG+P+AILKGR + VL + + G+ + LLGL + + A Sbjct: 62 TLQYFYRNTQLAGSSFDYHGSPIAILKGRAIIFVLAFAFNLLGHSSPLLGLALLIVMAAA 121 Query: 181 SPWLIWRSLQFKLYNTSYRGIRFGFRGSFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKR 240 PWL+ RSL+F++ N+SYRG+RF F G + FL+WP++S SL LL P+A QRFKR Sbjct: 122 FPWLLVRSLRFRMANSSYRGLRFAFTGKDAEGYMVFLVWPILSVLSLYLLAPLAHQRFKR 181 Query: 241 FQHNEARFGATHFSFHGSVGAFYLAFAAGIGGWIAGSVLIVVGFGGVALFQSVQSGAGSI 300 FQH RFG F F G+ G FY + G +A L+V + L S+ Sbjct: 182 FQHTNTRFGTAQFDFSGTPGNFYGVYLRTFG--LAILALVVASCLALLLGVSLHRAPDVG 239 Query: 301 AAFGLMLFAL--YAWSFLIIPLWITLLQNLVWNNTRLGEHRFESRMRWGRTAIILLTNVL 358 FG ++ L YA + P +++ LQNL+WN T LG HRF+S++ G+ I ++N + Sbjct: 240 QIFGFIVIGLFMYAAMLFLTPYFLSRLQNLIWNQTTLGAHRFQSQVGAGKLFWIFVSNAV 299 Query: 359 GIAFTLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATGEGLGDLLDFDLS 418 I T+GLFTPFA++R RY+++SVT+L AGSLD F+A + A G+ D D D++ Sbjct: 300 LILITIGLFTPFARVRTARYKLDSVTMLAAGSLDTFVAGETTNVGALGDATVDWYDIDIA 359 Query: 419 M 419 + Sbjct: 360 L 360 >ref|YP_001898163.1| hypothetical protein Rpic_0580 [Ralstonia pickettii 12J] gb|ACD25731.1| protein of unknown function DUF898 transmembrane [Ralstonia pickettii 12J] Length = 357 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 160/334 (47%), Positives = 218/334 (65%), Gaps = 4/334 (1%) Query: 88 FSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPVAILK 147 F G GSEYFRIWIVNLLL+IVTLGIYSAWAKVR L+YFY NT +AG+SFDYHG+P+AILK Sbjct: 26 FIGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVRTLQYFYRNTQLAGSSFDYHGSPIAILK 85 Query: 148 GRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRFGFRG 207 GR + VL + + G+ + LLGL + + A PWL+ RSL+F++ N+SYRG+RF F G Sbjct: 86 GRAIIFVLAFAFNLLGHSSPLLGLALLIVMAAAFPWLLVRSLRFRMANSSYRGLRFAFTG 145 Query: 208 SFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFYLAFA 267 + FL+WP++S SL LL P+A QRFKRFQH RFG F F G+ G FY + Sbjct: 146 KDAEGYMVFLVWPILSVLSLYLLAPLAHQRFKRFQHKNTRFGTAQFDFSGTPGNFYGVYL 205 Query: 268 AGIGGWIAGSVLIVVGFGGVALFQSVQSGAGSIAAFGLMLFAL--YAWSFLIIPLWITLL 325 G +A L+V + L S+ G FG +L L YA + P +++ L Sbjct: 206 RTFG--LAILALVVASCLALLLGVSLHRAPGVGQIFGFILIGLFMYAAMLFLTPYFLSRL 263 Query: 326 QNLVWNNTRLGEHRFESRMRWGRTAIILLTNVLGIAFTLGLFTPFAQIRMMRYRIESVTL 385 QN+VWN+T LG HRF+S++ G+ I ++N + I T+GLFTPFA++R RY+++SVT+ Sbjct: 264 QNVVWNHTTLGAHRFQSQVGAGKLFWIFVSNAVLILITIGLFTPFARVRTARYKLDSVTM 323 Query: 386 LPAGSLDDFIASSESPGSATGEGLGDLLDFDLSM 419 + AGSLD F+A + A G+ D D D+++ Sbjct: 324 IAAGSLDTFVAGETTNVGALGDATVDWYDIDIAL 357