BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4202.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspiril... 469 e-130 ref|ZP_06688283.1| gluconate 2-dehydrogenase subunit gamma [Achr... 342 3e-92 gb|EGP43041.1| gluconate 2-dehydrogenase subunit 3 [Achromobacte... 333 1e-89 ref|YP_003979724.1| gluconate 2-dehydrogenase subunit 3 [Achromo... 328 4e-88 gb|EFV87198.1| hypothetical protein HMPREF0005_05629 [Achromobac... 328 4e-88 >ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspirillum seropedicae SmR1] gb|ADJ64824.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 232/240 (96%), Positives = 238/240 (99%) Query: 1 MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60 MSQDKEPRRRFLRQVLAIVPAA+TLGGATTVAVSQ AMADSSEPGKPRAYTPTYFTA EW Sbjct: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ Sbjct: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMM+GGKI+F+TVPAKTFF+ Sbjct: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARAD+ADWVDQYNVKYPYGPVSILGEKG Sbjct: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 >ref|ZP_06688283.1| gluconate 2-dehydrogenase subunit gamma [Achromobacter piechaudii ATCC 43553] gb|EFF74811.1| gluconate 2-dehydrogenase subunit gamma [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 167/240 (69%), Positives = 192/240 (80%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60 M+ D +PRRRFL Q LAIVPA+T GA T + A + ++ P K +Y PTYFT PEW Sbjct: 17 MTDDAKPRRRFL-QALAIVPASTLAVGALTTGCTNAADSKTAAPAK--SYEPTYFTKPEW 73 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ A+VDHLIP+DQYG GA+E GVPEFIDRQMETP+G GKLWYMQGPFH D PELGYQ Sbjct: 74 DFIVASVDHLIPADQYGPGAIEAGVPEFIDRQMETPFGHGKLWYMQGPFHTDQAPELGYQ 133 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180 LS PR++YR GI ACNDWC K HGKV+AELDK Q ++LK ++GGKI F+TVPA TFFS Sbjct: 134 LSQNPREVYRHGIQACNDWCVKMHGKVYAELDKPLQEQILKDLQGGKIKFETVPATTFFS 193 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADP+YGGN+ M GWKMVGFPGARADY DW DQ NVKYPYGPVSI GEKG Sbjct: 194 FLLANTKEGFFADPIYGGNKNMVGWKMVGFPGARADYMDWADQPNVKYPYGPVSISGEKG 253 >gb|EGP43041.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans AXX-A] Length = 237 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 166/240 (69%), Positives = 190/240 (79%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60 M++D +PRRRFL Q LAIVPA+T G + A + ++ K AY PTYFT PEW Sbjct: 1 MTEDAKPRRRFL-QALAIVPASTLAVGVVATGCTDAADSGAARAAK--AYEPTYFTKPEW 57 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ AAVDHLIP+DQYG GA+E GVPEFIDRQMETPYG GKLWYMQGPFHPD PELGYQ Sbjct: 58 NFIVAAVDHLIPADQYGPGAIEAGVPEFIDRQMETPYGHGKLWYMQGPFHPDVAPELGYQ 117 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180 L+ PR++YR GIAAC+ WC K HGK++AELDK Q ++LK ++ GKI FD VPAKTFFS Sbjct: 118 LNQNPREVYRHGIAACDAWCQKTHGKLYAELDKPLQEQILKDLQAGKIEFDAVPAKTFFS 177 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240 F+LGNTKEG+FADPMYGGN+ M GWKMVGFPGAR DY DWVDQ N KYPYGPVSI GEKG Sbjct: 178 FLLGNTKEGFFADPMYGGNKNMVGWKMVGFPGARGDYMDWVDQPNAKYPYGPVSISGEKG 237 >ref|YP_003979724.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans A8] gb|ADP17009.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans A8] Length = 237 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 162/240 (67%), Positives = 189/240 (78%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60 M++D +PRRRFL Q LAIVPA+T GA T + + ++ KP Y PTYFT EW Sbjct: 1 MTEDAKPRRRFL-QALAIVPASTLAVGAMTTGCTNESDGAAARAAKP--YAPTYFTKAEW 57 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 AF+ AAVDHLIP+D+YG GA+E GVPEFIDRQMETP+G GKLWYMQGPFH D VPELGYQ Sbjct: 58 AFIVAAVDHLIPADEYGPGAIEAGVPEFIDRQMETPFGHGKLWYMQGPFHTDQVPELGYQ 117 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180 LS PR++YR GI AC+ WC K HGK +AELDK Q ++LK ++GGKI F++VPA TFFS Sbjct: 118 LSQNPREVYRHGIEACDAWCVKTHGKAYAELDKPLQEQILKDLQGGKIKFESVPATTFFS 177 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADPMYGGN+ M GWKMVGFPGARAD+ DW DQ N KYPYGPVSI GEKG Sbjct: 178 FLLSNTKEGFFADPMYGGNKNMVGWKMVGFPGARADFMDWADQPNAKYPYGPVSISGEKG 237 >gb|EFV87198.1| hypothetical protein HMPREF0005_05629 [Achromobacter xylosoxidans C54] Length = 239 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 164/240 (68%), Positives = 188/240 (78%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60 M+QD +PRRRFL Q LAIVPA+T G + A ++ +AY PTYFT PEW Sbjct: 3 MTQDAKPRRRFL-QALAIVPASTLAVGVAATGCTNAADGGAAR--AAKAYEPTYFTKPEW 59 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ AAVDHLIP+DQYG GA+E GVPEFIDRQMETPYG GKLWYMQGPFHPD PELGYQ Sbjct: 60 DFIVAAVDHLIPADQYGPGAIEAGVPEFIDRQMETPYGHGKLWYMQGPFHPDVAPELGYQ 119 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180 L+ PR++YR GI AC+ WC+K HGK +AELDK Q ++LK ++ GKI FDTVPA+TFFS Sbjct: 120 LNQNPREVYRHGIEACDAWCTKTHGKRYAELDKPVQEQILKDLQAGKIEFDTVPARTFFS 179 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADPMYGGN+ M GWKMVGFPGAR DY DW DQ NVKYPYGPVSI GEKG Sbjct: 180 FLLANTKEGFFADPMYGGNKNMVGWKMVGFPGARGDYMDWADQPNVKYPYGPVSISGEKG 239