BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4200.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776730.1| cytochrome c precursor protein [Herbaspirill... 819 0.0 ref|YP_003910248.1| gluconate 2-dehydrogenase (acceptor) [Burkho... 543 e-152 gb|EGP43039.1| cytochrome c family protein 9 [Achromobacter xylo... 530 e-148 gb|EFV87200.1| cytochrome c [Achromobacter xylosoxidans C54] 527 e-147 ref|ZP_06688281.1| gluconate 2-dehydrogenase cytochrome c subuni... 525 e-147 >ref|YP_003776730.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64822.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 423/441 (95%), Positives = 429/441 (97%) Query: 5 MIKHYFIAACAAVMSLSAFTAAAQSNAAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKP 64 MIKHYFIAACAAVMSLSA TAAAQSN AAPSADQQLVQRGEYLAKAGDCVACHTAKGGKP Sbjct: 1 MIKHYFIAACAAVMSLSALTAAAQSNPAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKP 60 Query: 65 FAGGLPIATPIGTVYSSNITPDKEHGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYA 124 FAGGL IATPIGTVYSSNITPDKE+GIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYA Sbjct: 61 FAGGLAIATPIGTVYSSNITPDKENGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYA 120 Query: 125 KVKPADVKALYAYFMQGVQADPAPNRGVDITWPLSMRWPLSVWRKVFAPAVTADGPEDNS 184 KVKPADVKALYAYFM GVQADPAPNRGVDITWPLSMRWPLS+WRKVFAPAV DGPEDNS Sbjct: 121 KVKPADVKALYAYFMHGVQADPAPNRGVDITWPLSMRWPLSIWRKVFAPAVAVDGPEDNS 180 Query: 185 PLVRGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSQFLSGGVIDGYLANNLRGDARDGL 244 PLVRGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSQFLSGGVIDGYLANNLRGD RDGL Sbjct: 181 PLVRGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSQFLSGGVIDGYLANNLRGDGRDGL 240 Query: 245 GNWSEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTGEDLSAMAKYLKSLKAVKEGTA 304 GNWSEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMT EDLSAMAKYLKSLK VK+GT Sbjct: 241 GNWSEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTEEDLSAMAKYLKSLKPVKDGTP 300 Query: 305 ALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYEETFPSLALSPTVNAENPAS 364 ALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGY+ETFPSLALSPTVNAENPAS Sbjct: 301 ALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYDETFPSLALSPTVNAENPAS 360 Query: 365 LIRIVLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSWGNQASSVSASDVAK 424 LIRIVLEGAEMPWTHKAPTQFAMP F SRLSDQEVA+VVTFIRSSWGNQASSVSASDVAK Sbjct: 361 LIRIVLEGAEMPWTHKAPTQFAMPAFGSRLSDQEVAEVVTFIRSSWGNQASSVSASDVAK 420 Query: 425 VRKQLPEKKTVEAGSAPLAKQ 445 VRKQLPEKKTVEAGSAP+AKQ Sbjct: 421 VRKQLPEKKTVEAGSAPVAKQ 441 >ref|YP_003910248.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia sp. CCGE1003] gb|ADN60957.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia sp. CCGE1003] Length = 439 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 277/435 (63%), Positives = 337/435 (77%), Gaps = 8/435 (1%) Query: 10 FIAACAAVMSLSAFTAAAQSNAAAP-SADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGG 68 F AC V++ + + + AAP +AD QL+++G YLA AGDCVACHTAKGGKPFAGG Sbjct: 6 FALACTIVLAGTCASVFTRPATAAPVTADAQLIEKGRYLAAAGDCVACHTAKGGKPFAGG 65 Query: 69 LPIATPIGTVYSSNITPDKEHGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKP 128 L IA+PIGT+YS+NITPDK GIG+Y+ +DFDRA+RHGI K+G++LYPAMPY SYAKVKP Sbjct: 66 LGIASPIGTIYSTNITPDKATGIGSYTLDDFDRAVRHGIAKNGSTLYPAMPYVSYAKVKP 125 Query: 129 ADVKALYAYFMQGVQADPAPNRGVDITWPLSMRWPLSVWRKVFAPAVTADGPE-DNSPLV 187 +DVKALYAYFM GV+ NR DI WPLSMRWPL WR FAP V +DG +SP+ Sbjct: 126 SDVKALYAYFMHGVEPVEQGNRASDIPWPLSMRWPLRFWRMTFAPEVASDGTALPDSPVA 185 Query: 188 RGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSQFLSGGVIDGYLANNLRGDARDGLGNW 247 RG+YLVEGL HC ACHTPRGVG+QEK+L++D FLSGGVID YLA NLRGDA+DGLG W Sbjct: 186 RGRYLVEGLAHCSACHTPRGVGLQEKSLTDDGRLFLSGGVIDHYLAKNLRGDAKDGLGTW 245 Query: 248 SEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTGEDLSAMAKYLKSLKAVKEGTAALA 307 SEADIVAFLK+GR +HSAAFGGMA+VV NSTQ+++ DL+A+A YLK+L V ALA Sbjct: 246 SEADIVAFLKSGRTAHSAAFGGMAEVVQNSTQHLSDADLAAIAAYLKTLAPVNPSGTALA 305 Query: 308 YDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYEETFPSLALSPTVNAENPASLIR 367 + ALR GSD+S GAM +++NCAACHR+SG GY+ TFP+LALS VN E+P SLIR Sbjct: 306 ANPNAGHALRAGSDRSNGAMTYVDNCAACHRTSGSGYQSTFPTLALSTVVNTEDPTSLIR 365 Query: 368 IVLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSWGNQASSVSASDVAKVRK 427 IVL+G EMPWT PT +AMP FASRL+D+++ADV+TF+RSSWGN A +V+ VAKVR Sbjct: 366 IVLQGGEMPWTAAGPTHYAMPDFASRLTDRDIADVLTFVRSSWGNHAPAVTVDQVAKVR- 424 Query: 428 QLPEKKTVEAGSAPL 442 K V+A + PL Sbjct: 425 -----KAVDAHAQPL 434 >gb|EGP43039.1| cytochrome c family protein 9 [Achromobacter xylosoxidans AXX-A] Length = 435 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 277/425 (65%), Positives = 329/425 (77%), Gaps = 8/425 (1%) Query: 17 VMSLSAFTAAAQSNAAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATPIG 76 V +LS + A AD Q++++GEYL++AGDC+ACHTAK GKPFAGGL I +P+G Sbjct: 7 VAALSVLACGSAWAADGTPADAQMIKQGEYLSRAGDCIACHTAKDGKPFAGGLGIESPLG 66 Query: 77 TVYSSNITPDKEHGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYA 136 T+YS+NITPDK+ GIGNY+ EDFDRA+RHG+ KDG SLYPAMPY +YAKV P DVKALY Sbjct: 67 TIYSTNITPDKDTGIGNYTLEDFDRAVRHGVAKDGHSLYPAMPYTAYAKVTPDDVKALYT 126 Query: 137 YFMQGVQADPAPNRGVDITWPLSMRWPLSVWRKVFAP-----AVTADGPE-DNSPLVRGQ 190 YFM GV+ N+ DITWPLSMRWPL VWR +FAP VTA E D L+RGQ Sbjct: 127 YFMHGVEPVKQANKDTDITWPLSMRWPLGVWRWMFAPDVVTAPVTAPASEADKVALLRGQ 186 Query: 191 YLVEGLGHCGACHTPRGVGMQEKALSN-DSSQFLSGGVIDGYLANNLRGDARDGLGNWSE 249 YLVEGLGHC CHTPRG +QEKAL++ D S FLSGGV++G+LA NLRGD DGLG+WS+ Sbjct: 187 YLVEGLGHCSTCHTPRGFALQEKALTDADGSAFLSGGVVEGWLAKNLRGDMTDGLGSWSK 246 Query: 250 ADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTGEDLSAMAKYLKSLKAV-KEGTAALAY 308 DI AFLK+GRN HSAAFGGMA VV +STQ++T D++A+A YLKSL V K T LAY Sbjct: 247 EDIAAFLKSGRNGHSAAFGGMAQVVQDSTQHLTDADVNAIAVYLKSLPPVNKNATKPLAY 306 Query: 309 DDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYEETFPSLALSPTVNAENPASLIRI 368 +D QALR G D S GAM FLNNCAACHRS+GKGY ETFP LALS TVN+ +PASLI I Sbjct: 307 NDTVAQALRTGKDTSDGAMTFLNNCAACHRSTGKGYAETFPQLALSSTVNSADPASLIHI 366 Query: 369 VLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSWGNQASSVSASDVAKVRKQ 428 VL+GA+MP T APT +AMPGF RL+D+EVADVVTF+RSSWGN+ ++VSASDVAKVRK+ Sbjct: 367 VLKGAQMPGTSAAPTAYAMPGFDWRLTDKEVADVVTFVRSSWGNEGAAVSASDVAKVRKE 426 Query: 429 LPEKK 433 + K Sbjct: 427 VGAAK 431 >gb|EFV87200.1| cytochrome c [Achromobacter xylosoxidans C54] Length = 438 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 276/430 (64%), Positives = 334/430 (77%), Gaps = 9/430 (2%) Query: 13 ACAAVMSLSAFTAAAQSNAAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIA 72 A A +S+ A +A ++ +AD QL+++GEYL++AGDC+ACHTAK GKPFAGGL I Sbjct: 5 AIVAALSVLAAGSAWAADGTPAAADAQLIKQGEYLSRAGDCIACHTAKDGKPFAGGLGIE 64 Query: 73 TPIGTVYSSNITPDKEHGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPADVK 132 +P+GT+YS+NITPDK+ GIGNY+ EDFDRA+RHG+ KDG SLYPAMPY +YAKV P DVK Sbjct: 65 SPLGTIYSTNITPDKDTGIGNYTLEDFDRAVRHGVAKDGHSLYPAMPYTAYAKVTPDDVK 124 Query: 133 ALYAYFMQGVQADPAPNRGVDITWPLSMRWPLSVWRKVFAPAV-------TADGPEDNSP 185 ALYAYFM GV+ N+ DITWPLSMRWPL VWR +FAP V T D Sbjct: 125 ALYAYFMHGVEPVKQANKDTDITWPLSMRWPLGVWRWMFAPDVATAPVSATPANDADKQA 184 Query: 186 LVRGQYLVEGLGHCGACHTPRGVGMQEKALSN-DSSQFLSGGVIDGYLANNLRGDARDGL 244 L+RGQYLVEGLGHC CHTPRG +QEKAL++ D S FLSGGV++G+LA NLRGD DGL Sbjct: 185 LLRGQYLVEGLGHCSTCHTPRGFALQEKALTDADGSAFLSGGVVEGWLAKNLRGDMADGL 244 Query: 245 GNWSEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTGEDLSAMAKYLKSLKAV-KEGT 303 G+WS+ DI AFLK+GRN HSAAFGGMA VV +STQ+++ D++A+A YLKSL V K+ + Sbjct: 245 GSWSKEDIAAFLKSGRNGHSAAFGGMAQVVQDSTQHLSDADVNAIAVYLKSLPPVNKDAS 304 Query: 304 AALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYEETFPSLALSPTVNAENPA 363 LAY+D QALR G D S GAM FLNNCAACHRS+GKGY ETFP LALS TVN+ +PA Sbjct: 305 RPLAYNDTVAQALRTGKDTSDGAMTFLNNCAACHRSTGKGYAETFPQLALSSTVNSADPA 364 Query: 364 SLIRIVLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSWGNQASSVSASDVA 423 SLI IVL+GA+MP T APT +AMPGF RL+D+EVADVVTF+R+SWGNQ ++VSASDVA Sbjct: 365 SLIHIVLKGAQMPGTTAAPTAYAMPGFDWRLTDKEVADVVTFVRASWGNQGAAVSASDVA 424 Query: 424 KVRKQLPEKK 433 KVRK++ K Sbjct: 425 KVRKEVGAAK 434 >ref|ZP_06688281.1| gluconate 2-dehydrogenase cytochrome c subunit [Achromobacter piechaudii ATCC 43553] gb|EFF74809.1| gluconate 2-dehydrogenase cytochrome c subunit [Achromobacter piechaudii ATCC 43553] Length = 437 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 269/429 (62%), Positives = 332/429 (77%), Gaps = 10/429 (2%) Query: 10 FIAACAAVMSLSAFTAAAQSNAAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGL 69 F A S +AA ++ S D Q++++GEYL++AGDC+ACHTA+GGKPFAGGL Sbjct: 2 FKQTIVAAFSALVASAAFAADGTPASTDAQMIKQGEYLSRAGDCIACHTARGGKPFAGGL 61 Query: 70 PIATPIGTVYSSNITPDKEHGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPA 129 I +P+GT+YS+NITPDK+ GIGNY+ EDFD+A+RHG KDG SLYPAMPY +YAKV P Sbjct: 62 GIESPLGTIYSTNITPDKDTGIGNYTYEDFDQAVRHGKAKDGHSLYPAMPYTAYAKVTPD 121 Query: 130 DVKALYAYFMQGVQADPAPNRGVDITWPLSMRWPLSVWRKVFAPAVTADGP-------ED 182 DVKALYAYFM GV+ N+ DI+WP+SMRWPL+VWR +FAP V +GP D Sbjct: 122 DVKALYAYFMHGVEPVKQQNKDTDISWPMSMRWPLTVWRWMFAPDVV-NGPAASDLKGAD 180 Query: 183 NSPLVRGQYLVEGLGHCGACHTPRGVGMQEKALSN-DSSQFLSGGVIDGYLANNLRGDAR 241 + L+RGQYLVEGLGHC CHTPRG +QEKALS+ D S FLSGGV++G+LA NLRGD Sbjct: 181 RAALLRGQYLVEGLGHCSTCHTPRGFALQEKALSDADGSAFLSGGVVEGWLAKNLRGDMV 240 Query: 242 DGLGNWSEADIVAFLKTGRNSHSAAFGGMADVVANSTQYMTGEDLSAMAKYLKSLKAV-K 300 DGLG W++ DI FLK+GRN HSAAFGGMA VV +STQ+++ +DL+A+A YLKSL V K Sbjct: 241 DGLGGWTKEDIAVFLKSGRNGHSAAFGGMAQVVEDSTQHLSDDDLNAIAVYLKSLPPVNK 300 Query: 301 EGTAALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGYEETFPSLALSPTVNAE 360 + T LAYD+ QALR G D+ GAMAFLNNCAACHRS+GKGY ETFP LALS TVN+ Sbjct: 301 DATKPLAYDETVAQALRTGKDKGDGAMAFLNNCAACHRSTGKGYTETFPQLALSSTVNSA 360 Query: 361 NPASLIRIVLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSWGNQASSVSAS 420 +P SLI IVL+GA+MP T APT +AMPGF R++D+EVADVV+F+RSSWGN+ ++VSA+ Sbjct: 361 DPTSLIHIVLKGAQMPGTTAAPTAYAMPGFDWRMTDKEVADVVSFVRSSWGNKGTAVSAA 420 Query: 421 DVAKVRKQL 429 DVAKVRK + Sbjct: 421 DVAKVRKDV 429