BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4199.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirill... 500 e-139 ref|YP_004417115.1| sugar ABC transporter permease [Pusillimonas... 461 e-128 ref|YP_548109.1| binding-protein-dependent transport systems inn... 443 e-122 ref|YP_004157654.1| binding-protein-dependent transport systems ... 434 e-120 ref|ZP_08873189.1| sugar ABC transporter permease [Verminephroba... 412 e-113 >ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] emb|CAP19670.1| permease component protein [Herbaspirillum seropedicae] gb|ADJ64821.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 289/293 (98%), Positives = 292/293 (99%) Query: 1 MAKKKDDQQETQGMDFLQSTPRRWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQT 60 MAKKKDDQQETQGMDFLQSTPR+WVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQ+ Sbjct: 1 MAKKKDDQQETQGMDFLQSTPRKWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQS 60 Query: 61 GNPFWVVAPTLAHFKKLLFQTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGS 120 GNPFWV+APTLAHFKKLLF TQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGS Sbjct: 61 GNPFWVIAPTLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGS 120 Query: 121 KQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS 180 KQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS Sbjct: 121 KQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS 180 Query: 181 IPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK 240 IPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK Sbjct: 181 IPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK 240 Query: 241 TVPVGIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 TVPVGIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE Sbjct: 241 TVPVGIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 >ref|YP_004417115.1| sugar ABC transporter permease [Pusillimonas sp. T7-7] gb|AEC20491.1| sugar ABC transporter permease [Pusillimonas sp. T7-7] Length = 301 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 244/289 (84%), Positives = 268/289 (92%) Query: 5 KDDQQETQGMDFLQSTPRRWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPF 64 K ++QET GMD+LQ+ PRRWVTIYIPL I +F+LLFPFYWM +TA KP++E+L +GNPF Sbjct: 13 KSEKQETHGMDYLQTLPRRWVTIYIPLGILVFILLFPFYWMAMTAIKPNSEMLLSSGNPF 72 Query: 65 WVVAPTLAHFKKLLFQTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVG 124 WV+APTL HFK LLF T + WL+NTVI+SVV+TF SLAASVF AYAIERLRFQGSKQVG Sbjct: 73 WVIAPTLQHFKDLLFNTPFTEWLINTVIISVVATFLSLAASVFGAYAIERLRFQGSKQVG 132 Query: 125 LGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYE 184 IF AYL+PPSILFIPLA+IVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYE Sbjct: 133 FAIFFAYLVPPSILFIPLASIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYE 192 Query: 185 LEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPV 244 LEECALIDGATRW+IL+KIILPLAVPGLISAGIFAFTLSWNEFIYALTF+SSSEVKTVPV Sbjct: 193 LEECALIDGATRWQILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFVSSSEVKTVPV 252 Query: 245 GIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 G+VTELVEGDVYHWG LMAGALLGS+PVA+VYSFFVEYYVSGMTGAVKE Sbjct: 253 GVVTELVEGDVYHWGQLMAGALLGSVPVAIVYSFFVEYYVSGMTGAVKE 301 >ref|YP_548109.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE43211.1| carbohydrate ABC transporter membrane protein 2, CUT1 family [Polaromonas sp. JS666] Length = 291 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 238/289 (82%), Positives = 265/289 (91%) Query: 5 KDDQQETQGMDFLQSTPRRWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPF 64 +D +T GM FL STPR+ +Y+PL IFLFVLLFPFYWM ITAFKP+NELLS+ GNPF Sbjct: 3 QDKSTDTVGMSFLDSTPRKLFRVYLPLCIFLFVLLFPFYWMGITAFKPNNELLSRDGNPF 62 Query: 65 WVVAPTLAHFKKLLFQTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVG 124 W++APTLAH KKLLF T YP W+ NTV+VSVVSTF SLAASV AAYAIERLRF G+K VG Sbjct: 63 WIIAPTLAHVKKLLFDTAYPQWMWNTVLVSVVSTFFSLAASVLAAYAIERLRFSGAKHVG 122 Query: 125 LGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYE 184 LGIFLAYL+PPSILFIPLA++VF+LGLFDTR ALILTYPTFLIPFCTWLLMGYFR+IP+E Sbjct: 123 LGIFLAYLVPPSILFIPLASVVFQLGLFDTRLALILTYPTFLIPFCTWLLMGYFRTIPFE 182 Query: 185 LEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPV 244 LEECALIDGATRW+ILVKI+LPLAVPGLISAGIFAFTLSWNEFIYALTF+SSSE+KT+PV Sbjct: 183 LEECALIDGATRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFVSSSEIKTLPV 242 Query: 245 GIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 G+VTELVEGDVYHWG+LMAGAL GSLPVA +YSFFVEYYVSGMTG+VKE Sbjct: 243 GVVTELVEGDVYHWGSLMAGALFGSLPVAFIYSFFVEYYVSGMTGSVKE 291 >ref|YP_004157654.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU39543.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 291 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 235/286 (82%), Positives = 261/286 (91%) Query: 8 QQETQGMDFLQSTPRRWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVV 67 Q +T GM +L + PR+ VT+Y+PL++FL VLLFPFYWM IT+ KPD ELLS+ GNPFWV+ Sbjct: 6 QVDTVGMSYLDTIPRKAVTVYLPLVVFLIVLLFPFYWMAITSVKPDAELLSREGNPFWVI 65 Query: 68 APTLAHFKKLLFQTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGI 127 PTL+HF KLLF+T YP WL NTV+VSVVSTF SLAASVFAAYAIERLRF+GSK VGL I Sbjct: 66 NPTLSHFYKLLFETSYPQWLWNTVLVSVVSTFVSLAASVFAAYAIERLRFKGSKHVGLSI 125 Query: 128 FLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEE 187 FLAY++PPSILFIPLA +VF LGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIP ELEE Sbjct: 126 FLAYMVPPSILFIPLANVVFNLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPAELEE 185 Query: 188 CALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIV 247 CALIDGA+RW+ILVKI+LPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKT+PVG+V Sbjct: 186 CALIDGASRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTLPVGVV 245 Query: 248 TELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 TELV+GDVY WG LMAGALLGSLPVA +YSFFVEYYVSGMTG+VKE Sbjct: 246 TELVQGDVYQWGPLMAGALLGSLPVAFIYSFFVEYYVSGMTGSVKE 291 >ref|ZP_08873189.1| sugar ABC transporter permease [Verminephrobacter sp. At4] Length = 280 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 232/280 (82%), Positives = 253/280 (90%) Query: 14 MDFLQSTPRRWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVVAPTLAH 73 MDFL+S PRRWVT+YIP+L F+ VLLFPFYWM +T+ KP+NELLS+ NPFW+V PTLAH Sbjct: 1 MDFLRSMPRRWVTVYIPVLCFVLVLLFPFYWMAVTSLKPNNELLSRESNPFWIVGPTLAH 60 Query: 74 FKKLLFQTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLI 133 F+KLLF T YPAWL NTV+VSVVST SL SV AAYAIERLRFQG+K G IFLAYL+ Sbjct: 61 FQKLLFHTGYPAWLWNTVVVSVVSTGISLVLSVLAAYAIERLRFQGAKPAGGAIFLAYLV 120 Query: 134 PPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDG 193 PPSILFIPLAAIV KLGLFD+R ALILTYPTFLIPF TWLLMGYFRSIPYELEECALIDG Sbjct: 121 PPSILFIPLAAIVVKLGLFDSRMALILTYPTFLIPFGTWLLMGYFRSIPYELEECALIDG 180 Query: 194 ATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTELVEG 253 A+RW+ILVKI+LPLAVPGLISAGIFAFTLSWNEFIYALTFISSSE KTVPVG+VTELVEG Sbjct: 181 ASRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFISSSESKTVPVGVVTELVEG 240 Query: 254 DVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 DVYHWG LMAGALLGSLPVA YSFFVE+YVSG+TGA+KE Sbjct: 241 DVYHWGPLMAGALLGSLPVAFAYSFFVEHYVSGLTGAIKE 280