BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4198.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirill... 528 e-148 ref|YP_004417114.1| binding-protein-dependent transport systems ... 433 e-119 ref|YP_004157653.1| binding-protein-dependent transport systems ... 423 e-116 ref|YP_548108.1| binding-protein-dependent transport systems inn... 415 e-114 ref|YP_001527126.1| sugar ABC transporter permease [Azorhizobium... 408 e-112 >ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64820.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 297/299 (99%), Positives = 298/299 (99%) Query: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYL 60 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDN+TYL Sbjct: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYL 60 Query: 61 AGDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 AGDSLAQLSLFNTVFYTVSASILKF LGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS Sbjct: 61 AGDSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 Query: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA Sbjct: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 Query: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG Sbjct: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 Query: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK Sbjct: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 >ref|YP_004417114.1| binding-protein-dependent transport systems inner membrane component [Pusillimonas sp. T7-7] gb|AEC20490.1| binding-protein-dependent transport systems inner membrane component [Pusillimonas sp. T7-7] Length = 300 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 242/299 (80%), Positives = 272/299 (90%) Query: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYL 60 +LSR LNN NVLG+LFM P+ ILL+VFLTYPLGLG+WLGFTDT +G G +IGLDNY YL Sbjct: 2 LLSRKLNNSNVLGILFMLPSAILLLVFLTYPLGLGVWLGFTDTDLGSSGEWIGLDNYLYL 61 Query: 61 AGDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 GD + QL+LFNT+FYT ASI+KF LGLWLA+LLNKN+P K+ FR+IVLLPWIVPTALS Sbjct: 62 IGDPVTQLALFNTIFYTTVASIVKFGLGLWLALLLNKNLPFKSLFRSIVLLPWIVPTALS 121 Query: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 ALAFWW+YDAQFS+ISW L K+GLID YI+FLGDPWNAR+ST+ AN+WRGIPFVAI+LLA Sbjct: 122 ALAFWWIYDAQFSIISWTLVKLGLIDEYINFLGDPWNARFSTIAANIWRGIPFVAITLLA 181 Query: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 GLQTISP+LYEAA+IDG +PWQQFR+VTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG Sbjct: 182 GLQTISPALYEAASIDGVSPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 241 Query: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 GPLNATHLM TLSFQRAIPGGALGEG+ALA MIPFLL AIMFSYFGLQR+ WQ+GGDK Sbjct: 242 GPLNATHLMTTLSFQRAIPGGALGEGSALAIMMIPFLLGAIMFSYFGLQRQAWQRGGDK 300 >ref|YP_004157653.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU39542.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 302 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 227/297 (76%), Positives = 266/297 (89%) Query: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYL 60 +L+RF N+RN LG+ FM PA +LL++FLTYPLGLG +LGFTD K+G G ++GL+NY YL Sbjct: 3 LLARFQNSRNALGLAFMLPAAVLLLLFLTYPLGLGTYLGFTDAKVGRAGQWVGLENYEYL 62 Query: 61 AGDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 GD++ +L+LFNT+FYT AS+ KF LGLWLAILLN+N+ KTFFRA++LLP+IVPTALS Sbjct: 63 WGDAVTRLALFNTLFYTTVASVFKFFLGLWLAILLNRNIRFKTFFRAVILLPYIVPTALS 122 Query: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 A+AFWW+YD+QFS+ISWAL KMGLID+YIDFLG WNAR + + ANVWRG+PFVAI+LLA Sbjct: 123 AIAFWWIYDSQFSIISWALVKMGLIDQYIDFLGSEWNARIAVIIANVWRGVPFVAITLLA 182 Query: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 GLQTISPS YEA+AIDGATPWQQFRHVT+PLLTPIIAVVMTFSVLFTFTDFQLIYV+TRG Sbjct: 183 GLQTISPSYYEASAIDGATPWQQFRHVTMPLLTPIIAVVMTFSVLFTFTDFQLIYVITRG 242 Query: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGG 297 GPLNATHLMATLSFQRAI GGALGEGAA+A M+PFLLA +MFS+FGLQRR WQQGG Sbjct: 243 GPLNATHLMATLSFQRAISGGALGEGAAIAIAMVPFLLACVMFSFFGLQRRAWQQGG 299 >ref|YP_548108.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE43210.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Polaromonas sp. JS666] Length = 300 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 231/297 (77%), Positives = 267/297 (89%) Query: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYL 60 ML R N+RN LG++FM PA +LL++FLTYPLGLG+WLGFTD K+G G +IG++NY +L Sbjct: 1 MLERLQNSRNALGLIFMLPAAVLLLLFLTYPLGLGVWLGFTDAKVGRPGEWIGIENYVFL 60 Query: 61 AGDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 A DS+ QL+LFNT+FYT AS+ KF LGLWLA+LLNKN+ K+FFRA++LLP+IVPTALS Sbjct: 61 ATDSVTQLALFNTLFYTTIASVAKFFLGLWLALLLNKNIRFKSFFRAVILLPYIVPTALS 120 Query: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 A+AFWWL+DAQFS+ISW L K+G+ID YIDFLG PWNAR+S + ANVWRG+PFVAI+LLA Sbjct: 121 AIAFWWLFDAQFSIISWVLVKLGVIDTYIDFLGSPWNARFSVIAANVWRGVPFVAITLLA 180 Query: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 GLQTISPS YEA+AIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYV+TRG Sbjct: 181 GLQTISPSYYEASAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVITRG 240 Query: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGG 297 GPLNATHLMATLSFQRAI GGALGEGAA++ M+PFLLAAIMFSYFGLQRR WQQGG Sbjct: 241 GPLNATHLMATLSFQRAISGGALGEGAAISIAMVPFLLAAIMFSYFGLQRRAWQQGG 297 >ref|YP_001527126.1| sugar ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF90208.1| putative ABC-type sugar transport systems permease [Azorhizobium caulinodans ORS 571] Length = 374 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 226/296 (76%), Positives = 261/296 (88%) Query: 2 LSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYLA 61 LSR R++LG++F+ PA + L+ FLTYPLGLG+WLGFTDT+IG +G FIGL+NY L Sbjct: 77 LSRVGQGRHLLGLMFLLPAAVFLLFFLTYPLGLGVWLGFTDTRIGRDGVFIGLENYEMLF 136 Query: 62 GDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSA 121 GDSL L++FNTV YTV ASILKFALGLWLA+LLN+N+P K+FFRA+VLLPW+VPT LSA Sbjct: 137 GDSLFWLAVFNTVLYTVGASILKFALGLWLALLLNQNLPFKSFFRAVVLLPWVVPTVLSA 196 Query: 122 LAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAG 181 +AFWW++DAQFSVISWAL K+GLID I+FLGD NAR S + ANVWRGIPFVAISLLAG Sbjct: 197 IAFWWIFDAQFSVISWALIKIGLIDHNINFLGDTTNARASVIAANVWRGIPFVAISLLAG 256 Query: 182 LQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGG 241 LQTI SL+EAA +DGAT WQ+FR++TLP+L+PIIAVVMTFSVLFTFTDFQLIYVLTRGG Sbjct: 257 LQTIPQSLHEAATLDGATGWQRFRYITLPMLSPIIAVVMTFSVLFTFTDFQLIYVLTRGG 316 Query: 242 PLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGG 297 PLNATHLMATLSFQRAIPGG LGEGAA+A MIPFLL+AI+FSYFGLQRR WQQGG Sbjct: 317 PLNATHLMATLSFQRAIPGGQLGEGAAIAVAMIPFLLSAILFSYFGLQRRKWQQGG 372