BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4197.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776727.1| sugar ABC transporter periplasmic protein [H... 801 0.0 ref|YP_004417113.1| extracellular solute-binding protein [Pusill... 607 e-172 ref|YP_001313066.1| extracellular solute-binding protein [Sinorh... 513 e-143 ref|YP_472711.1| sugar ABC transporter, substrate-binding protei... 513 e-143 gb|AEH83084.1| putative sugar uptake ABC transporter periplasmic... 511 e-142 >ref|YP_003776727.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64819.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 421/442 (95%), Positives = 434/442 (98%) Query: 1 MSKLTRREFLVTSAAAAAASSMGVNAFAAGPGAAGADSIKYPIEQGATLRILRWKRFVQG 60 MSKLTRREFLVTSAAAAAA+ MG NAFAAGPGAAGADSIKYPIEQGATLR+LRWKRFVQG Sbjct: 1 MSKLTRREFLVTSAAAAAATGMGANAFAAGPGAAGADSIKYPIEQGATLRVLRWKRFVQG 60 Query: 61 DEDLWNANVKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTK 120 DEDLWNAN+KKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTK Sbjct: 61 DEDLWNANIKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTK 120 Query: 121 LVDMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIP 180 LVDMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIP Sbjct: 121 LVDMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIP 180 Query: 181 KDTAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKNGQVAINSAET 240 KDTAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDK+G+VAINS ET Sbjct: 181 KDTAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKSGKVAINSPET 240 Query: 241 RAALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISLTANGISVYYAAKNSQDPKLQDIA 300 RAALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQIS+TANGISVYYAAKNS DPKLQ+I Sbjct: 241 RAALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISMTANGISVYYAAKNSPDPKLQEIG 300 Query: 301 KDTQHAHFPVGPAGKPTELMQITQMMVFKHTKFPNAAKAFVQFMFEPDQYNPWMKASIGY 360 KDT HAHFP+GP GKP+ELMQITQMMVFKHTK+PNAAKAFVQFMFEPDQYNPWMKASIGY Sbjct: 301 KDTLHAHFPIGPVGKPSELMQITQMMVFKHTKYPNAAKAFVQFMFEPDQYNPWMKASIGY 360 Query: 361 VSQPLKAYEKNPVWTDDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAA 420 VSQ LKAYEKNP+WT+DPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAA Sbjct: 361 VSQSLKAYEKNPIWTEDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAA 420 Query: 421 SGAKTVQQAIDRAAERAKRYYK 442 SGAKTVQQAIDRAA+RAKRYYK Sbjct: 421 SGAKTVQQAIDRAADRAKRYYK 442 >ref|YP_004417113.1| extracellular solute-binding protein [Pusillimonas sp. T7-7] gb|AEC20489.1| extracellular solute-binding protein [Pusillimonas sp. T7-7] Length = 439 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 306/445 (68%), Positives = 362/445 (81%), Gaps = 8/445 (1%) Query: 1 MSKLTRREFLVTSAAAAAASSMGVNAFAAGPGAAGA--DSIKYPIEQGATLRILRWKRFV 58 M+K TRR+FL ++AA AA S+ G+ PG+AGA +++Y E+GA LR+LRW+RFV Sbjct: 1 MTKQTRRDFLRSTAAVAAVSAWGI------PGSAGAAGPTLEYKPEEGAELRVLRWRRFV 54 Query: 59 QGDEDLWNANVKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYP 118 QG+ED W AN KKFTE TGV VR D EG+E++RPK+AVAA VGSGPD++LGW+DDP QYP Sbjct: 55 QGEEDQWMANTKKFTEQTGVKVRVDHEGFENIRPKAAVAARVGSGPDVILGWYDDPHQYP 114 Query: 119 TKLVDMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDA 178 KL+D+++L + LG +YGGWYDVC+KYG + KWIA+PLG +GNALVYRES IKAAGFDA Sbjct: 115 EKLLDVSELGEYLGNKYGGWYDVCKKYGKNENKWIAIPLGAVGNALVYRESMIKAAGFDA 174 Query: 179 IPKDTAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKNGQVAINSA 238 IP+DTAGFLKLCQALKAK TP FALG AV D N W HWLLWSHGG + D G V ++S Sbjct: 175 IPEDTAGFLKLCQALKAKGTPAAFALGHAVLDGNAWVHWLLWSHGGMVSDPKGNVVLDSP 234 Query: 239 ETRAALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISLTANGISVYYAAKNSQDPKLQD 298 ET AALEY+KQLY TF+PGTLSWQDPSNNK + DGQI LT NGISVYYAAK S+DP + Sbjct: 235 ETVAALEYSKQLYDTFLPGTLSWQDPSNNKVFFDGQIGLTNNGISVYYAAKLSKDPTIHA 294 Query: 299 IAKDTQHAHFPVGPAGKPTELMQITQMMVFKHTKFPNAAKAFVQFMFEPDQYNPWMKASI 358 +A D HAH+PVGP GKPTEL ITQMM FK+TK+PNAAKA++QFM E DQY+PWM+ASI Sbjct: 295 MATDIHHAHYPVGPVGKPTELPGITQMMAFKYTKYPNAAKAYIQFMMEADQYDPWMEASI 354 Query: 359 GYVSQPLKAYEKNPVWTDDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAE 418 GYVSQ LKAYEKNP+WT DPK TVYRDSAS MLD+G+ GPLG ASAA MADYV++DM A Sbjct: 355 GYVSQSLKAYEKNPIWTADPKHTVYRDSASRMLDNGYNGPLGAASAAVMADYVILDMFAS 414 Query: 419 AASGAKTVQQAIDRAAERAKRYYKT 443 AASG T Q+A +AAERAKRYYK+ Sbjct: 415 AASGDMTPQEAAKQAAERAKRYYKS 439 >ref|YP_001313066.1| extracellular solute-binding protein [Sinorhizobium medicae WSM419] gb|ABR63133.1| extracellular solute-binding protein family 1 [Sinorhizobium medicae WSM419] Length = 434 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 255/439 (58%), Positives = 324/439 (73%), Gaps = 8/439 (1%) Query: 4 LTRREFLVTSAAAAAASSMGVNAFAAGPGAAGADSIKYPIEQGATLRILRWKRFVQGDED 63 + RR+FL TSAA A + +G+ P A A+ Y E+GA+LR+LRW FV+GDED Sbjct: 3 IKRRDFLATSAALAGVAGLGIR-----PSFAQAEP-SYKPEEGASLRLLRWTPFVKGDED 56 Query: 64 LWNANVKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTKLVD 123 W AN KKFTE TGV VR D E WED+RPK+AVAANVGSGPD+V+ WFDD QYP KLVD Sbjct: 57 AWIANTKKFTETTGVEVRIDKESWEDIRPKAAVAANVGSGPDMVMCWFDDAHQYPDKLVD 116 Query: 124 MTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIPKDT 183 +T+LAD LG +YGGWYD + Y +++G++IA+PL IGNA+ YRES +KAAGF PKDT Sbjct: 117 VTELADYLGNKYGGWYDGLKGYASREGQFIAMPLAAIGNAVCYRESHMKAAGFSEFPKDT 176 Query: 184 AGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKNGQVAINSAETRAA 243 AGFL+LC+ALKAK TP GF GKAVGD NN+AHWLLWSHGGK+VD++G+V INS ET AA Sbjct: 177 AGFLELCKALKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGKVMINSPETLAA 236 Query: 244 LEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISLTANGISVYYAAKNSQDPKLQDIAKDT 303 + YAK LY TF+PGT SW D +NN+A+L GQ+SLTANG+S+YYAAK +DP L ++A D Sbjct: 237 VNYAKSLYETFIPGTESWLDINNNRAFLAGQVSLTANGVSLYYAAK--KDPALAELAADI 294 Query: 304 QHAHFPVGPAGKPTELMQITQMMVFKHTKFPNAAKAFVQFMFEPDQYNPWMKASIGYVSQ 363 + +FP+GP G+ EL Q + +++FKH+K+P AAKA+++FM E DQ N W++ S Y Q Sbjct: 295 RTTNFPIGPVGQSVELHQTSSILLFKHSKYPEAAKAYLKFMMEADQMNAWIEGSSAYCCQ 354 Query: 364 PLKAYEKNPVWTDDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAASGA 423 PLKA+ NPVWT DP Y ++ + +G+ GPLG ASA MADYV+VDM A A +G Sbjct: 355 PLKAFADNPVWTSDPIHAPYARASETLRPNGYAGPLGYASAGVMADYVLVDMFASAVTGQ 414 Query: 424 KTVQQAIDRAAERAKRYYK 442 T + AI A RA RYY+ Sbjct: 415 ATPEDAIVEAERRANRYYR 433 >ref|YP_472711.1| sugar ABC transporter, substrate-binding protein [Rhizobium etli CFN 42] gb|ABC93984.1| probable sugar ABC transporter, substrate-binding protein [Rhizobium etli CFN 42] Length = 434 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 256/439 (58%), Positives = 324/439 (73%), Gaps = 8/439 (1%) Query: 4 LTRREFLVTSAAAAAASSMGVNAFAAGPGAAGADSIKYPIEQGATLRILRWKRFVQGDED 63 + RREFL SAA A + +G+ P A A+ P E GA+LR+LRW FV+GDED Sbjct: 3 IKRREFLAASAAVAGVAGLGIK-----PSFAQAEPTYTP-ESGASLRLLRWTPFVKGDED 56 Query: 64 LWNANVKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTKLVD 123 W AN KKFTE TGV VR D E WED+RPK+AVAANVGSGPD+++ WFDD QYP KLVD Sbjct: 57 AWVANTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVD 116 Query: 124 MTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIPKDT 183 +T+L + LG +Y GWYD + Y T+D K+IA+PL IGNA+VYR+S +KAAGF+ P DT Sbjct: 117 LTELGNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYRDSHVKAAGFNEFPNDT 176 Query: 184 AGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKNGQVAINSAETRAA 243 AGFL+LC+A+KAK TP GF GKAVGD NN+AHWLLWSHGGK+VD++G V INS ET A+ Sbjct: 177 AGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLAS 236 Query: 244 LEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISLTANGISVYYAAKNSQDPKLQDIAKDT 303 + YAK+LYATF+PGT SW D +NN+A+L GQ+SL ANG+SVYY AKN DPKL +IAKD Sbjct: 237 INYAKELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKN--DPKLAEIAKDI 294 Query: 304 QHAHFPVGPAGKPTELMQITQMMVFKHTKFPNAAKAFVQFMFEPDQYNPWMKASIGYVSQ 363 + +FP+GP GK EL Q + +++FKH+K+P AAKA+++FM E DQ N W++ S Y Q Sbjct: 295 RTTNFPIGPVGKSVELFQTSSLLLFKHSKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQ 354 Query: 364 PLKAYEKNPVWTDDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAASGA 423 PLKA+ KNPVWT DP Y ++ + +G+ GPLG ASAA MADYV+VDM A A +G Sbjct: 355 PLKAFAKNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMADYVLVDMYAAAVTGQ 414 Query: 424 KTVQQAIDRAAERAKRYYK 442 K+ + A+ A RA RYY+ Sbjct: 415 KSPEDAMKEAERRANRYYR 433 >gb|AEH83084.1| putative sugar uptake ABC transporter periplasmic solute-binding protein precursor [Sinorhizobium meliloti SM11] Length = 434 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 255/439 (58%), Positives = 323/439 (73%), Gaps = 8/439 (1%) Query: 4 LTRREFLVTSAAAAAASSMGVNAFAAGPGAAGADSIKYPIEQGATLRILRWKRFVQGDED 63 + RR+FL TSAA A + +G+ P A A+ Y E+GA+LR+LRW FV+GDED Sbjct: 3 IKRRDFLATSAALAGVAGLGIR-----PSFAQAEP-SYKPEEGASLRLLRWTPFVKGDED 56 Query: 64 LWNANVKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTKLVD 123 W AN KKFTE TGV VR D E WED+RPK+AVAANVGSGPD+V+ WFDD QYP KLVD Sbjct: 57 AWIANTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDMVMCWFDDAHQYPDKLVD 116 Query: 124 MTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIPKDT 183 +T+LAD LG +YGGWYD + Y ++DG++IA+PL IGNA+ YRES +KAAGF PKDT Sbjct: 117 LTELADYLGNKYGGWYDGLKGYASRDGQFIAMPLAAIGNAVCYRESHMKAAGFSEFPKDT 176 Query: 184 AGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKNGQVAINSAETRAA 243 AGFL+LC+ALKAK TP GF GKAVGD NN+AHWLLWSHGGK+VD++G+V INS ET AA Sbjct: 177 AGFLELCKALKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGKVTINSPETLAA 236 Query: 244 LEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISLTANGISVYYAAKNSQDPKLQDIAKDT 303 + YAK LY TF+PGT SW D +NN+A+L GQ+SLTANG+S+YYAAK +D L ++A D Sbjct: 237 VNYAKSLYETFIPGTESWLDINNNRAFLAGQVSLTANGVSLYYAAK--KDAALTELAADI 294 Query: 304 QHAHFPVGPAGKPTELMQITQMMVFKHTKFPNAAKAFVQFMFEPDQYNPWMKASIGYVSQ 363 + +FPVGP G+ EL Q + +++FKH+K+P AAKA+++FM E DQ N W++ S Y Q Sbjct: 295 RTTNFPVGPVGQSVELHQTSSILLFKHSKYPEAAKAYLKFMMEADQMNAWIEGSSAYCCQ 354 Query: 364 PLKAYEKNPVWTDDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAASGA 423 PLKA+ NPVWT DP Y ++ + +G+ GPLG ASA MADYV+VDM A A +G Sbjct: 355 PLKAFADNPVWTSDPIHAPYARASETLRPNGYAGPLGYASAGVMADYVLVDMFASAVTGQ 414 Query: 424 KTVQQAIDRAAERAKRYYK 442 T + A+ A RA RYY+ Sbjct: 415 ATPEDAVIEAERRANRYYR 433