BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4192.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776722.1| hypothetical protein Hsero_3333 [Herbaspiril... 597 e-169 ref|YP_999257.1| hypothetical protein Veis_4541 [Verminephrobact... 466 e-129 ref|YP_001771064.1| hypothetical protein M446_4284 [Methylobacte... 386 e-105 ref|YP_549823.1| twin-arginine translocation pathway signal prot... 373 e-101 ref|YP_002944122.1| hypothetical protein Vapar_2221 [Variovorax ... 365 5e-99 >ref|YP_003776722.1| hypothetical protein Hsero_3333 [Herbaspirillum seropedicae SmR1] gb|ADJ64814.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 321/339 (94%), Positives = 330/339 (97%) Query: 1 MPFISKSSRNNTCKSTRRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLIVPWGAGGGT 60 MPFISKSSRNNTCKSTRRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTL+VPWGAGGGT Sbjct: 1 MPFISKSSRNNTCKSTRRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLVVPWGAGGGT 60 Query: 61 DATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQG 120 DATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQG Sbjct: 61 DATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQG 120 Query: 121 LTKLTPRDLTPLALMNFDPAALTVSTESPYKNFDDLLKAIKANPGKLKASGTGQGGIWHL 180 LTKLTPRD TPLALMNFDPAALTVS +SPYK+FDDLLKAIKANPGKLKASGTGQGGIWHL Sbjct: 121 LTKLTPRDFTPLALMNFDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGGIWHL 180 Query: 181 GLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKATPLVI 240 GLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKA PLV+ Sbjct: 181 GLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAVPLVV 240 Query: 241 MANEPAALYPKVPTLKSLTGSTWTNGAWRGIVGPKGLPADVQGKLSASLKKIYDSKEYKD 300 MANEPAALYPKVPTLKSLTGS WTNGAWRGIV PKGLPA+VQ +LSASLKKIY+SK+YKD Sbjct: 241 MANEPAALYPKVPTLKSLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESKDYKD 300 Query: 301 FMSGRGFGTQYADAAEFGKFMDKSDEDMGAILKTLGMAR 339 FMSGRGFG YAD+AEFGKFMDKSD DMGAILKTLGMAR Sbjct: 301 FMSGRGFGVMYADSAEFGKFMDKSDADMGAILKTLGMAR 339 >ref|YP_999257.1| hypothetical protein Veis_4541 [Verminephrobacter eiseniae EF01-2] gb|ABM60239.1| Uncharacterized protein UPF0065 [Verminephrobacter eiseniae EF01-2] Length = 330 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 251/322 (77%), Positives = 279/322 (86%) Query: 17 RRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLIVPWGAGGGTDATARIIGALLEKDLG 76 RR + ++++ ALS L+ A AAWP+RPVTL+VPW AGGGTDATARIIGALLEK+LG Sbjct: 5 RRKIFRAVVTAAAALSALSFGAAHAAWPDRPVTLVVPWAAGGGTDATARIIGALLEKELG 64 Query: 77 QPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQGLTKLTPRDLTPLALMN 136 QPVNVVNRTGGNG VGHQAIA A PDGYTIG+ATVEI+MMHHQGLT+L+ RD TP+AL+N Sbjct: 65 QPVNVVNRTGGNGVVGHQAIAGATPDGYTIGMATVEIAMMHHQGLTQLSYRDYTPIALLN 124 Query: 137 FDPAALTVSTESPYKNFDDLLKAIKANPGKLKASGTGQGGIWHLGLAGMLNDLKVAPNAV 196 FDPAALTVS ESPYK FDDLLKA+KA PGKLKASGTG GGIWHL LAGML+DLK+ AV Sbjct: 125 FDPAALTVSAESPYKTFDDLLKAVKAAPGKLKASGTGHGGIWHLSLAGMLSDLKLDTVAV 184 Query: 197 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKATPLVIMANEPAALYPKVPTLK 256 R+VPSNGAAPA+VDLAAGGVDIVAASLPEAR LIDAGKA P+VIMAN PAALYP VPTLK Sbjct: 185 RWVPSNGAAPALVDLAAGGVDIVAASLPEARPLIDAGKARPMVIMANAPAALYPNVPTLK 244 Query: 257 SLTGSTWTNGAWRGIVGPKGLPADVQGKLSASLKKIYDSKEYKDFMSGRGFGTQYADAAE 316 SLTGS WT G WRGI PKGLPAD+Q KL+ ++KI +SKEYKDFM GRGFG YAD+AE Sbjct: 245 SLTGSNWTMGGWRGIAAPKGLPADIQAKLARHIQKICNSKEYKDFMGGRGFGMMYADSAE 304 Query: 317 FGKFMDKSDEDMGAILKTLGMA 338 FGKFM+KSD DMG ILKTLGMA Sbjct: 305 FGKFMEKSDTDMGQILKTLGMA 326 >ref|YP_001771064.1| hypothetical protein M446_4284 [Methylobacterium sp. 4-46] gb|ACA18630.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 335 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 206/326 (63%), Positives = 250/326 (76%), Gaps = 3/326 (0%) Query: 17 RRTVLKSLMAGTV--ALSVLAAPCAFAA-WPERPVTLIVPWGAGGGTDATARIIGALLEK 73 RR VL L A ++ AL L A AA WPERP+TL+VPW AGGGTDATARIIG+L+EK Sbjct: 10 RRRVLGILSATSLLAALPFLGVSSAHAAGWPERPITLLVPWAAGGGTDATARIIGSLIEK 69 Query: 74 DLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQGLTKLTPRDLTPLA 133 +LGQPVNVVNRTGGNG VGH AIA + PDGYTIG+ATVEI+M+H QGLT LT +D TPLA Sbjct: 70 ELGQPVNVVNRTGGNGVVGHTAIAKSQPDGYTIGLATVEIAMLHWQGLTALTAKDFTPLA 129 Query: 134 LMNFDPAALTVSTESPYKNFDDLLKAIKANPGKLKASGTGQGGIWHLGLAGMLNDLKVAP 193 LMN DPA + V ++PYK DL+ IKANPGK KASGTGQGGIWHL +AGML+ L P Sbjct: 130 LMNLDPAGVQVREDAPYKTVKDLIDDIKANPGKHKASGTGQGGIWHLAIAGMLDSLGADP 189 Query: 194 NAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKATPLVIMANEPAALYPKVP 253 +V +VPSNGAAP + DL AGGV IV S+PEARSLI+AG+ L IM P ++PKVP Sbjct: 190 ASVPWVPSNGAAPGLQDLVAGGVTIVPCSIPEARSLIEAGRVKSLAIMDETPNPIFPKVP 249 Query: 254 TLKSLTGSTWTNGAWRGIVGPKGLPADVQGKLSASLKKIYDSKEYKDFMSGRGFGTQYAD 313 TL++ TGS+WT GAWRG+V PKGLP D+ KL A L K+Y+SK+YKDFM GRGFG ++A Sbjct: 250 TLRAETGSSWTIGAWRGVVAPKGLPEDIAKKLIAVLDKVYNSKDYKDFMGGRGFGIRHAA 309 Query: 314 AAEFGKFMDKSDEDMGAILKTLGMAR 339 +F F +KSD D+GA++K +G+A+ Sbjct: 310 GPDFLSFWEKSDADLGAVMKKVGIAK 335 >ref|YP_549823.1| twin-arginine translocation pathway signal protein [Polaromonas sp. JS666] gb|ABE44925.1| Twin-arginine translocation pathway signal [Polaromonas sp. JS666] Length = 330 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 202/298 (67%), Positives = 238/298 (79%) Query: 42 AWPERPVTLIVPWGAGGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAP 101 +P RPVTLIVPWGAGGGTDATARI+G+LLEK++GQPV VVNRTGG+G VGH AIASA P Sbjct: 33 GYPTRPVTLIVPWGAGGGTDATARIVGSLLEKEIGQPVTVVNRTGGSGVVGHSAIASAPP 92 Query: 102 DGYTIGIATVEISMMHHQGLTKLTPRDLTPLALMNFDPAALTVSTESPYKNFDDLLKAIK 161 DGYTIG+ATVEI MMH QGLT+LT TP+ L+N DPA + V ++PYK ++LL AIK Sbjct: 93 DGYTIGLATVEIGMMHWQGLTELTGASYTPIGLVNADPAGIQVRADAPYKTVNELLAAIK 152 Query: 162 ANPGKLKASGTGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAA 221 ANPGKLKASGTGQGGIWHL +AG+L D K+ P +V +VPSNGAAP + D+ AGGVDI Sbjct: 153 ANPGKLKASGTGQGGIWHLAIAGLLRDQKIDPASVPWVPSNGAAPGLQDMIAGGVDIAPV 212 Query: 222 SLPEARSLIDAGKATPLVIMANEPAALYPKVPTLKSLTGSTWTNGAWRGIVGPKGLPADV 281 SLPEARSLIDAGK L IM ++PAALYP V TLK+ GS WT AWRGIV PKG+PA+V Sbjct: 213 SLPEARSLIDAGKVKSLAIMNDKPAALYPNVATLKAAIGSDWTMAAWRGIVAPKGIPAEV 272 Query: 282 QGKLSASLKKIYDSKEYKDFMSGRGFGTQYADAAEFGKFMDKSDEDMGAILKTLGMAR 339 + KLSA++KKI SKEY DFMS RGFG YA EFGKFM KSD ++GA +K +G+A+ Sbjct: 273 RDKLSAAIKKIAASKEYNDFMSSRGFGVVYAGPDEFGKFMAKSDAELGATMKAVGIAK 330 >ref|YP_002944122.1| hypothetical protein Vapar_2221 [Variovorax paradoxus S110] gb|ACS18856.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 335 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 196/297 (65%), Positives = 233/297 (78%) Query: 43 WPERPVTLIVPWGAGGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPD 102 +P RPVTLIVPWGAGGGTDATARII +LLEK+LGQP+ VVNRTGGNG VGH AIA+A PD Sbjct: 39 YPSRPVTLIVPWGAGGGTDATARIIASLLEKELGQPMTVVNRTGGNGVVGHAAIAAAPPD 98 Query: 103 GYTIGIATVEISMMHHQGLTKLTPRDLTPLALMNFDPAALTVSTESPYKNFDDLLKAIKA 162 GYTIG+ATVEI MMH QGLT LT TP+ L N DPA + V ++PYKN +LL AIKA Sbjct: 99 GYTIGMATVEIGMMHWQGLTPLTSASYTPIGLANLDPAGIQVRADAPYKNVAELLAAIKA 158 Query: 163 NPGKLKASGTGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAAS 222 +PGKLKASGTGQGGIWHL +AG+L D K+ P AV +VPSNGAAP + D+ AGGVDI S Sbjct: 159 SPGKLKASGTGQGGIWHLAIAGLLRDQKIDPAAVPWVPSNGAAPGLQDVVAGGVDIAPVS 218 Query: 223 LPEARSLIDAGKATPLVIMANEPAALYPKVPTLKSLTGSTWTNGAWRGIVGPKGLPADVQ 282 LPEARSLIDAGK L IM+++P+ALYP VPTLK+ GS W+ AWRGIV PKGLPADV+ Sbjct: 219 LPEARSLIDAGKVKSLAIMSDKPSALYPNVPTLKAAIGSDWSMAAWRGIVAPKGLPADVR 278 Query: 283 GKLSASLKKIYDSKEYKDFMSGRGFGTQYADAAEFGKFMDKSDEDMGAILKTLGMAR 339 KL+ +LKK+ SKEY DFM+ RGFG YA +F +M KSD ++GA +K +G+ + Sbjct: 279 DKLAGALKKVVASKEYTDFMASRGFGVIYAGPDDFAAYMAKSDAELGAAMKAVGIVK 335