BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4191.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776721.1| hypothetical protein Hsero_3332 [Herbaspiril... 214 1e-53 ref|YP_999256.1| hypothetical protein Veis_4540 [Verminephrobact... 145 4e-33 ref|ZP_02188545.1| hypothetical protein BAL199_05154 [alpha prot... 101 1e-19 ref|YP_549822.1| hypothetical protein Bpro_3010 [Polaromonas sp.... 92 6e-17 ref|YP_002944123.1| hypothetical protein Vapar_2222 [Variovorax ... 91 1e-16 >ref|YP_003776721.1| hypothetical protein Hsero_3332 [Herbaspirillum seropedicae SmR1] gb|ADJ64813.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 176 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 136/177 (76%), Positives = 152/177 (85%), Gaps = 1/177 (0%) Query: 58 MKINDALSGLLIAVLAVVLWIASSRLPAMGQDIGPNVFPQALAGGLMICAVLLVLRGLRG 117 MKINDALSGL++A+ AVVLWIASSRLPAMGQDIGPNVFPQALA GL+ICAVLLVLRGLRG Sbjct: 1 MKINDALSGLVVALFAVVLWIASSRLPAMGQDIGPNVFPQALAVGLLICAVLLVLRGLRG 60 Query: 118 LRQARTARGGPASRIATVAADEQDLRWVTLPDWFRSGHAVFAFLLIPLSLVFYIWVSEPL 177 LR+ + AR S +T A +QD W TLP+W + HAV AFLL+P SL+FYIWVSEPL Sbjct: 61 LRKTK-ARSAHVSTFSTTGAADQDAHWFTLPEWIGNSHAVLAFLLVPASLLFYIWVSEPL 119 Query: 178 GFLPTAFVLLLALFVTFRTRVLVALPVAMASALLIHTIFYKLLKVPLPWGILTPLAW 234 GFLPTAFVLLL LFVTFRTR+L A+P A+A AL+IHTIFYKLLKVPLPWGILTPLAW Sbjct: 120 GFLPTAFVLLLVLFVTFRTRLLTAVPTALACALIIHTIFYKLLKVPLPWGILTPLAW 176 >ref|YP_999256.1| hypothetical protein Veis_4540 [Verminephrobacter eiseniae EF01-2] gb|ABM60238.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 156 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 96/177 (54%), Positives = 118/177 (66%), Gaps = 21/177 (11%) Query: 58 MKINDALSGLLIAVLAVVLWIASSRLPAMGQDIGPNVFPQALAGGLMICAVLLVLRGLRG 117 MKIND LSGLL+A+ A ++I + P+M Q +GP +FPQ LAGG MICA LL+ +GLR Sbjct: 1 MKINDTLSGLLLALFAAAIFIYAGTFPSMRQQVGPALFPQLLAGGFMICAFLLICKGLR- 59 Query: 118 LRQARTARGGPASRIATVAADEQDLRWVTLPDWFRSGHAVFAFLLIPLSLVFYIWVSEPL 177 Q RT W +LP WF AVFA+LL+ LSLVFYI E L Sbjct: 60 --QTRTEA------------------WFSLPPWFGERRAVFAYLLVLLSLVFYICACEAL 99 Query: 178 GFLPTAFVLLLALFVTFRTRVLVALPVAMASALLIHTIFYKLLKVPLPWGILTPLAW 234 GFLPTA +LLL+L +TF R+ VA+P+A+ASAL IH IFYKLLKVPLPWG+L +AW Sbjct: 100 GFLPTATILLLSLSMTFGARLAVAMPMAIASALGIHCIFYKLLKVPLPWGMLESIAW 156 >ref|ZP_02188545.1| hypothetical protein BAL199_05154 [alpha proteobacterium BAL199] gb|EDP64821.1| hypothetical protein BAL199_05154 [alpha proteobacterium BAL199] Length = 158 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 97/178 (54%), Gaps = 21/178 (11%) Query: 58 MKINDALSGLLIAVLAVVLWIASSRLPAM-GQDIGPNVFPQALAGGLMICAVLLVLRGLR 116 M+ NDA+ GL++ V A+V A+ P + GQ G +FP+ L G +C +LL+ G+R Sbjct: 1 MRFNDAIIGLVLIVFALVAGYATRDFPQIPGQSYGAALFPRLLCVGFAVCGLLLIASGMR 60 Query: 117 GLRQARTARGGPASRIATVAADEQDLRWVTLPDWFRSGHAVFAFLLIPLSLVFYIWVSEP 176 + AT A W+ L DW RS + +VFYI VSE Sbjct: 61 --------------QRATAGA------WLDLDDWARSFSGPLTLAITIGGMVFYILVSES 100 Query: 177 LGFLPTAFVLLLALFVTFRTRVLVALPVAMASALLIHTIFYKLLKVPLPWGILTPLAW 234 LGF+PTAF++ +L + R R + +L +A ++IH IFYKLL VPLPWG+L PL + Sbjct: 101 LGFIPTAFLMTASLLLRLRGRWISSLAIAAMVTMVIHQIFYKLLLVPLPWGVLEPLVF 158 >ref|YP_549822.1| hypothetical protein Bpro_3010 [Polaromonas sp. JS666] gb|ABE44924.1| conserved hypothetical protein [Polaromonas sp. JS666] Length = 157 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 100/178 (56%), Gaps = 22/178 (12%) Query: 58 MKINDALSGLLIAVL-AVVLWIASSRLPAMGQDIGPNVFPQALAGGLMICAVLLVLRGLR 116 MK+NDA+ GL++A+L AVVL+ S GQ +GP +FP +A GL + V+L++RG Sbjct: 1 MKLNDAIFGLVLALLGAVVLFTVQSFPKIPGQQVGPALFPGLIAAGLCVGGVVLMVRGW- 59 Query: 117 GLRQARTARGGPASRIATVAADEQDLRWVTLPDWFRSGHAVFAFLLIPLSLVFYIWVSEP 176 AR A WV W +S V ++ S++FY+ ++ Sbjct: 60 ---HARAAA-----------------PWVRFEGWTQSPRHVLGLAVLVASVLFYMLAADK 99 Query: 177 LGFLPTAFVLLLALFVTFRTRVLVALPVAMASALLIHTIFYKLLKVPLPWGILTPLAW 234 LGFL TA ++L A+F R + +L +A+ ++LLIH FYKLL+VPLPWG+L AW Sbjct: 100 LGFLLTATLILTAMFYVLRVPLGRSLLIAIIASLLIHFAFYKLLRVPLPWGLLVNHAW 157 >ref|YP_002944123.1| hypothetical protein Vapar_2222 [Variovorax paradoxus S110] gb|ACS18857.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 157 Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 22/178 (12%) Query: 58 MKINDALSGLLIAVLAVVLWIASSRLPAM-GQDIGPNVFPQALAGGLMICAVLLVLRGLR 116 MK NDA+ G ++ L +V+ P + GQ +GP +FP +A GL +C +L+ +G R Sbjct: 1 MKFNDAIFGAILLALGIVVLAVVQGYPGIPGQQVGPALFPGLIAAGLCVCGAMLLAKGWR 60 Query: 117 GLRQARTARGGPASRIATVAADEQDLRWVTLPDWFRSGHAVFAFLLIPLSLVFYIWVSEP 176 A WV L DW S V + L+ +++FY++ SE Sbjct: 61 ERHAAA---------------------WVRLGDWAASPRHVLSAALVIGAVLFYMFASER 99 Query: 177 LGFLPTAFVLLLALFVTFRTRVLVALPVAMASALLIHTIFYKLLKVPLPWGILTPLAW 234 LGFLPTA V LLAL + R AL +A+ +ALLIH FYKLL+VPLPWG+L P+AW Sbjct: 100 LGFLPTAAVSLLALMLAMRVPPGRALLIALVAALLIHAAFYKLLRVPLPWGVLMPIAW 157