BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4190.p (498 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776720.1| transmembrane protein [Herbaspirillum serope... 785 0.0 ref|YP_999255.1| hypothetical protein Veis_4539 [Verminephrobact... 714 0.0 ref|YP_549821.1| hypothetical protein Bpro_3009 [Polaromonas sp.... 611 e-173 ref|YP_002944124.1| hypothetical protein Vapar_2223 [Variovorax ... 608 e-172 ref|YP_001771066.1| hypothetical protein M446_4286 [Methylobacte... 564 e-158 >ref|YP_003776720.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64812.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 498 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 482/498 (96%), Positives = 491/498 (98%) Query: 1 MLANLYAALAMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA 60 M AN+YAA MVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA Sbjct: 1 MFANIYAAFGMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA 60 Query: 61 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL 120 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL Sbjct: 61 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL 120 Query: 121 FGTFVLIFSAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASV 180 FGTFVLI +APALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIAS+ Sbjct: 121 FGTFVLILAAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASI 180 Query: 181 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFAMKVAESRVGNVFK 240 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDF+MKVAESRVGNVFK Sbjct: 181 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFSMKVAESRVGNVFK 240 Query: 241 GMWGLMLKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGI 300 GMWGLM+KYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKK+SKEPEKFGTGHPEGI Sbjct: 241 GMWGLMIKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKLSKEPEKFGTGHPEGI 300 Query: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVDNPVSMYAIFL 360 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFV+NPVSMYAIF+ Sbjct: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVENPVSMYAIFI 360 Query: 361 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG 420 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG Sbjct: 361 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG 420 Query: 421 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKSDGQFLAFFERPIAGTLGVITLLL 480 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIK+DGQFLAFFERPIAGTLGVITLLL Sbjct: 421 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKADGQFLAFFERPIAGTLGVITLLL 480 Query: 481 WLLPLVLKLVRRKPLALA 498 WLLPL LKLVRRK LA A Sbjct: 481 WLLPLALKLVRRKTLATA 498 >ref|YP_999255.1| hypothetical protein Veis_4539 [Verminephrobacter eiseniae EF01-2] gb|ABM60237.1| protein of unknown function DUF112, transmembrane [Verminephrobacter eiseniae EF01-2] Length = 497 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 435/494 (88%), Positives = 465/494 (94%) Query: 1 MLANLYAALAMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA 60 MLANLYAA A VFDPYVLAVI GSS+FGLFMGA+PGLSATMAVALLVPVTFFMP VPA+A Sbjct: 1 MLANLYAAFAQVFDPYVLAVIFGSSMFGLFMGAIPGLSATMAVALLVPVTFFMPAVPAVA 60 Query: 61 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL 120 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMT KGQGEIALGASLVFS +GGL Sbjct: 61 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTRKGQGEIALGASLVFSAVGGL 120 Query: 121 FGTFVLIFSAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASV 180 FGTFVLI +APALAELALKFSSFEYFWLVLLGLTCAIFIAS+NPLKGFVSL LGMFIAS+ Sbjct: 121 FGTFVLILAAPALAELALKFSSFEYFWLVLLGLTCAIFIASNNPLKGFVSLLLGMFIASI 180 Query: 181 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFAMKVAESRVGNVFK 240 GMGNPAG PRFTF+ +LLGGVSLVPLMVGMFAMSEVLR+AVS+D M + VGNVFK Sbjct: 181 GMGNPAGFPRFTFNNANLLGGVSLVPLMVGMFAMSEVLRYAVSKDEPMPIDGRPVGNVFK 240 Query: 241 GMWGLMLKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGI 300 GMW L LKYPKS+LRGSVLGTLVGALPGAGADIAAWMSYAMSKKMS+EPEKFGTGHPEGI Sbjct: 241 GMWNLALKYPKSILRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSREPEKFGTGHPEGI 300 Query: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVDNPVSMYAIFL 360 VE+GAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFV NPVS+YAIF+ Sbjct: 301 VEAGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVQNPVSIYAIFM 360 Query: 361 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG 420 VFILANLLMLPLGF CIK+AKRIL +PR +LMPLILLFCIVGSYATNNSV+DVG ML+FG Sbjct: 361 VFILANLLMLPLGFGCIKLAKRILRVPRNVLMPLILLFCIVGSYATNNSVSDVGTMLIFG 420 Query: 421 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKSDGQFLAFFERPIAGTLGVITLLL 480 LLAY+ME NGFPVAP +LGVVLGGMLEEHFVTSMIK+DG+FLAFF RPIAGTLGV+T+LL Sbjct: 421 LLAYLMEVNGFPVAPTILGVVLGGMLEEHFVTSMIKADGEFLAFFSRPIAGTLGVLTILL 480 Query: 481 WLLPLVLKLVRRKP 494 WLLPLVL+ +RRKP Sbjct: 481 WLLPLVLRGLRRKP 494 >ref|YP_549821.1| hypothetical protein Bpro_3009 [Polaromonas sp. JS666] gb|ABE44923.1| protein of unknown function DUF112, transmembrane [Polaromonas sp. JS666] Length = 499 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 344/485 (70%), Positives = 415/485 (85%) Query: 8 ALAMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIAAMVSATA 67 A MVF+PY L V++ ++ +GLF+GAVPGL+ATMA ALLVPVTFFM PVPAIAA+V+ATA Sbjct: 8 AFLMVFEPYTLFVMVLAAFYGLFVGAVPGLTATMATALLVPVTFFMAPVPAIAAIVTATA 67 Query: 68 MAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGLFGTFVLI 127 MAIFSGDIPGCLLRIPGTP+SAAYTDEA+A+T KGQ E+ALGA LVFS +GGLFGT VLI Sbjct: 68 MAIFSGDIPGCLLRIPGTPASAAYTDEAFALTRKGQAEVALGAGLVFSAVGGLFGTIVLI 127 Query: 128 FSAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASVGMGNPAG 187 +APALAE A++FSSFEYFWLVLLGLTCA+FI SD PLKG ++LFLG+ +A VG+ NPAG Sbjct: 128 VAAPALAEFAIRFSSFEYFWLVLLGLTCAVFITSDRPLKGLITLFLGLLVACVGLNNPAG 187 Query: 188 APRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFAMKVAESRVGNVFKGMWGLML 247 PRFTF ++ GG+ ++ +M+GMFA+SE++R+ V ++ +VGNV KG W L Sbjct: 188 FPRFTFGNAEMTGGIGMIAMMIGMFAISEIIRYVVDTSPPAELVVEQVGNVLKGQWKLAK 247 Query: 248 KYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGIVESGAAN 307 KYP +LRGSVLGT VGALPGAGADIAAWMSYAMSKK SKEPEKFGTGH EGIVESG+AN Sbjct: 248 KYPVQILRGSVLGTAVGALPGAGADIAAWMSYAMSKKFSKEPEKFGTGHVEGIVESGSAN 307 Query: 308 NSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVDNPVSMYAIFLVFILANL 367 NSALAGAWIPALVFGIPGDSITAIVIGVLYMKN+NPGP +F NP ++YAIFL+FILAN+ Sbjct: 308 NSALAGAWIPALVFGIPGDSITAIVIGVLYMKNMNPGPTLFTTNPQNIYAIFLIFILANI 367 Query: 368 LMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFGLLAYVME 427 +M+PLG CIK +K+IL +PR ILMPLILLFC+VG++A NNS+ ++G+MLV GL+AY++E Sbjct: 368 IMVPLGILCIKASKKILKVPRNILMPLILLFCMVGTFAINNSMFEIGVMLVAGLIAYLLE 427 Query: 428 ENGFPVAPAVLGVVLGGMLEEHFVTSMIKSDGQFLAFFERPIAGTLGVITLLLWLLPLVL 487 EN FP+APA+LGVVLGGMLEE+F+TSMIKSDG +AF RPIA TL V+T+L+W +PLVL Sbjct: 428 ENHFPIAPAILGVVLGGMLEENFITSMIKSDGNLMAFVGRPIAATLAVLTVLVWTMPLVL 487 Query: 488 KLVRR 492 +RR Sbjct: 488 GWLRR 492 >ref|YP_002944124.1| hypothetical protein Vapar_2223 [Variovorax paradoxus S110] gb|ACS18858.1| protein of unknown function DUF112 transmembrane [Variovorax paradoxus S110] Length = 502 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 350/492 (71%), Positives = 416/492 (84%) Query: 1 MLANLYAALAMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIA 60 M A L A +MVF+PY + V++ +S++GLF+GAVPGLSATMAVALLVPVTFFM P+PAIA Sbjct: 1 MSAALLQAFSMVFEPYTILVMVLASLYGLFVGAVPGLSATMAVALLVPVTFFMQPIPAIA 60 Query: 61 AMVSATAMAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGL 120 AMV+ATAMAIFSGDIPGCLLRIPGTP+SAAYTDEA+AMT KG E ALGA LVFS +GGL Sbjct: 61 AMVTATAMAIFSGDIPGCLLRIPGTPASAAYTDEAFAMTRKGMAETALGAGLVFSAVGGL 120 Query: 121 FGTFVLIFSAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASV 180 FGT VLI +APALA+ AL FSSFEYFWLVLLGLTCA+FI SD PLKG ++L LG+ +A V Sbjct: 121 FGTVVLIVAAPALADFALNFSSFEYFWLVLLGLTCAVFITSDRPLKGMITLLLGLLVACV 180 Query: 181 GMGNPAGAPRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFAMKVAESRVGNVFK 240 G+GNPAG PRFTF ++ GG+ ++P+M+GMFA+SEV+RFAV +V +VG+V Sbjct: 181 GLGNPAGFPRFTFGNAEMTGGIGMIPMMIGMFAISEVIRFAVDTLPPGEVVVEKVGSVLS 240 Query: 241 GMWGLMLKYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGI 300 G W L KYP +LRGS+LGT VGALPGAGADIAAWMSYAMSKK SKEPEKFGTGH EGI Sbjct: 241 GQWALAKKYPVQILRGSLLGTAVGALPGAGADIAAWMSYAMSKKFSKEPEKFGTGHVEGI 300 Query: 301 VESGAANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVDNPVSMYAIFL 360 VESG+ANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGP +F NP ++YA+F+ Sbjct: 301 VESGSANNSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPTLFTTNPQNIYAVFM 360 Query: 361 VFILANLLMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFG 420 +FI+AN++M+PLG CIK+AKRIL +PR +LMPLILLFCIVG++A NNS+ DVG+MLV G Sbjct: 361 LFIIANIIMIPLGILCIKVAKRILRVPRNVLMPLILLFCIVGAFAINNSLFDVGVMLVAG 420 Query: 421 LLAYVMEENGFPVAPAVLGVVLGGMLEEHFVTSMIKSDGQFLAFFERPIAGTLGVITLLL 480 ++AY++EENGFP+APA+LGVVLGGMLEE+F+TSMIKSDG F RPIA +L + LL+ Sbjct: 421 MVAYLLEENGFPIAPAILGVVLGGMLEENFITSMIKSDGNLAGFVSRPIAASLAAVVLLV 480 Query: 481 WLLPLVLKLVRR 492 WL PL+ KL R Sbjct: 481 WLAPLLKKLWLR 492 >ref|YP_001771066.1| hypothetical protein M446_4286 [Methylobacterium sp. 4-46] gb|ACA18632.1| protein of unknown function DUF112 transmembrane [Methylobacterium sp. 4-46] Length = 497 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 313/486 (64%), Positives = 399/486 (82%) Query: 8 ALAMVFDPYVLAVILGSSIFGLFMGAVPGLSATMAVALLVPVTFFMPPVPAIAAMVSATA 67 A +VF VL+++ +S FGLF+GA PGL+ATMA+ALLVPVTFFM P+PAI AMV+ +A Sbjct: 7 AFGLVFRWDVLSMMAFASAFGLFVGATPGLTATMAIALLVPVTFFMDPIPAIGAMVTCSA 66 Query: 68 MAIFSGDIPGCLLRIPGTPSSAAYTDEAYAMTMKGQGEIALGASLVFSVIGGLFGTFVLI 127 MAIF+GDIP LLRIPGTP+SAAY DEAYAMT KG+GEI LGA+L FS +GGLFGT VLI Sbjct: 67 MAIFAGDIPAALLRIPGTPASAAYADEAYAMTRKGEGEIGLGANLFFSALGGLFGTAVLI 126 Query: 128 FSAPALAELALKFSSFEYFWLVLLGLTCAIFIASDNPLKGFVSLFLGMFIASVGMGNPAG 187 +AP LAE ALKFSSFEYFWL LLGLTC +FI + NP+KG VSLF+G+ I++VG+ NPAG Sbjct: 127 VAAPWLAEAALKFSSFEYFWLALLGLTCGVFIGAANPVKGLVSLFIGLLISTVGLNNPAG 186 Query: 188 APRFTFDQPDLLGGVSLVPLMVGMFAMSEVLRFAVSRDFAMKVAESRVGNVFKGMWGLML 247 PRFTF DL+GG+ +P M+G+FA+SEVLR VS V + G++F+ GL++ Sbjct: 187 VPRFTFGNVDLMGGIEFIPAMIGLFAVSEVLRAVVSDSKLAGVPQLIQGSLFRNWGGLLV 246 Query: 248 KYPKSVLRGSVLGTLVGALPGAGADIAAWMSYAMSKKMSKEPEKFGTGHPEGIVESGAAN 307 +Y LRG+++GT++GALPGAGADIAAW+SYA+SK+ SK PEKFGTGH EGI+ES ++N Sbjct: 247 QYWPQQLRGNIVGTIIGALPGAGADIAAWVSYAVSKRFSKTPEKFGTGHVEGIIESTSSN 306 Query: 308 NSALAGAWIPALVFGIPGDSITAIVIGVLYMKNLNPGPMIFVDNPVSMYAIFLVFILANL 367 N+AL GAW+PALVFGIPGDSITA+VIGVLYMK +NPGP +F++NP ++YA+F++FILANL Sbjct: 307 NAALGGAWVPALVFGIPGDSITAVVIGVLYMKGMNPGPTMFLNNPQNIYAVFIIFILANL 366 Query: 368 LMLPLGFWCIKMAKRILSIPRGILMPLILLFCIVGSYATNNSVTDVGIMLVFGLLAYVME 427 LM+PLG+ IK AK IL +PR ILMP IL+FCIVG++A NN+V V +ML FG+L ++ME Sbjct: 367 LMIPLGWLAIKSAKEILRVPRHILMPCILIFCIVGAFAVNNAVFGVVVMLAFGVLGFLME 426 Query: 428 ENGFPVAPAVLGVVLGGMLEEHFVTSMIKSDGQFLAFFERPIAGTLGVITLLLWLLPLVL 487 ENG PVAPA+LG+VLG M+EE+FVTSMIK++G AFFERPIA LG++T+L+W+ PL+L Sbjct: 427 ENGIPVAPAILGIVLGSMVEENFVTSMIKANGNLAAFFERPIAAGLGILTILVWVSPLLL 486 Query: 488 KLVRRK 493 + RR+ Sbjct: 487 IVWRRR 492