BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4188.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776718.1| GntR family transcription regulator protein ... 400 e-110 emb|CBA29567.1| hypothetical protein Csp_A12800 [Curvibacter put... 210 2e-52 ref|YP_550755.1| GntR family transcriptional regulator [Polaromo... 207 2e-51 ref|YP_004153139.1| GntR family transcriptional regulator [Vario... 206 3e-51 ref|YP_004618006.1| GntR family transcriptional regulator [Ramli... 203 2e-50 >ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64810.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 227/257 (88%), Positives = 245/257 (95%), Gaps = 1/257 (0%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MPIEAIEPQRLYRQISDQLRKLIV+GEFAVGSRLPSER+L++QLGVSRPSLREALIALEV Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 EGYIEVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 120 EG+IEVRMGSGIYVC PP+QRE R DLS EEGPLELIRAREMIEGEVAYAAAQHGSKQQI Sbjct: 61 EGHIEVRMGSGIYVC-PPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 119 Query: 121 AAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLH 180 AAVEEAY+LMI++A+AGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLF+RLH Sbjct: 120 AAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLH 179 Query: 181 SHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIREYGNRQQQ 240 SHFDGTRVWQEAI+EH L+M+ALR+RNPEQARAAMRRHMDIAFTRYSANLIREYG+R QQ Sbjct: 180 SHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRVQQ 239 Query: 241 ESAPRKRPARKTSLQLK 257 + PRKR RK+ QLK Sbjct: 240 QERPRKRAVRKSDTQLK 256 >emb|CBA29567.1| hypothetical protein Csp_A12800 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 273 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 120/228 (52%), Positives = 157/228 (68%), Gaps = 4/228 (1%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MP + IEP+RLYRQI+DQLR+LI GEFAVGS+LP+ER+L+ ++GVSRPS+REALIALEV Sbjct: 42 MPFQPIEPRRLYRQIADQLRQLIQTGEFAVGSKLPAERDLATKMGVSRPSVREALIALEV 101 Query: 61 EGYIEVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 120 EG IEVRMGSGI V A RE L GPLE+IRAR++IE E+A AA+ + Sbjct: 102 EGLIEVRMGSGIVVIA----RESVRMLDNAPGPLEIIRARQLIECELAALAAKSTDPTLV 157 Query: 121 AAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLH 180 + E M A A P+ DR FHIR+A+A+ NS L +VTQLFD R GPLF++L Sbjct: 158 PDLLETLRDMEADIAARTLPIRGDRAFHIRIAQASDNSALQAVVTQLFDERNGPLFQKLG 217 Query: 181 SHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSA 228 HF+ W+ A++EH ++ A+ +P+ ARAAM H+D + R+SA Sbjct: 218 GHFEREATWKAAVDEHRAVVDAIAAHDPDMARAAMSGHLDHSHERFSA 265 >ref|YP_550755.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45857.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 269 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 123/235 (52%), Positives = 159/235 (67%), Gaps = 3/235 (1%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MPI+ +EPQRLYRQI++QLR LI GEFA G RLP+ER+L+ QLGVSRPS+REALIALEV Sbjct: 31 MPIQTVEPQRLYRQIAEQLRSLISKGEFAAGKRLPAERDLAKQLGVSRPSVREALIALEV 90 Query: 61 EGYIEVRMGSGIYVCAPPMQRELRHD---LSGEEGPLELIRAREMIEGEVAYAAAQHGSK 117 EG++EVR GSG+YV Q + ++ S E GPLELIRAR ++EGE+A AA + Sbjct: 91 EGWVEVRTGSGVYVLDRSNQVQRKNGPQIASTEWGPLELIRARRVVEGEIASMAAVQAKR 150 Query: 118 QQIAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFE 177 + I A+ +A M + A G+ PLE DR FH + EA GN VL+ V +D+R GPLF Sbjct: 151 KDIDAMRKAIDAMKSDAGRGVLPLEGDRAFHTAIVEACGNVVLIETVQSFWDSRRGPLFT 210 Query: 178 RLHSHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIR 232 RL +F+ + WQ AI+EH I A+ + ARAAM HMD + TR+SA+ R Sbjct: 211 RLGGYFETMKSWQSAIDEHEAIYAAICAHDGAAARAAMHAHMDKSHTRFSASWRR 265 >ref|YP_004153139.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35028.1| GntR domain protein [Variovorax paradoxus EPS] Length = 235 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 122/232 (52%), Positives = 156/232 (67%), Gaps = 1/232 (0%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MP++ +EPQRLYRQI+DQLR LI GEFAVG+RL +ER+L+ QLGVSRPS+REALIALEV Sbjct: 1 MPLQTVEPQRLYRQIADQLRALIAKGEFAVGARLSAERDLAKQLGVSRPSVREALIALEV 60 Query: 61 EGYIEVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 120 EG++EVR GSG+YV R E GPLELIRAR +IEGE A AA G ++ + Sbjct: 61 EGWVEVRTGSGVYVLDRS-HRAPAPVAPTEWGPLELIRARRVIEGETAAIAAAAGKRKDV 119 Query: 121 AAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLH 180 A+ A LM A+ + PLE DR FH+ + A+GN+VLV V +D+R GP+F RL Sbjct: 120 DAMSRAIELMREMADRNVMPLEGDRAFHLAIVNASGNTVLVETVQNFWDSRKGPIFTRLG 179 Query: 181 SHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIR 232 +F+ W+ AI EH I A+ R+ E ARAAM HMD + R+SA+ R Sbjct: 180 GYFENVPSWRSAIVEHEAIRDAVAARDAEGARAAMHAHMDKSHQRFSASWRR 231 >ref|YP_004618006.1| GntR family transcriptional regulator [Ramlibacter tataouinensis TTB310] gb|AEG91987.1| transcriptional regulator, GntR family-like protein [Ramlibacter tataouinensis TTB310] Length = 249 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 125/233 (53%), Positives = 158/233 (67%), Gaps = 2/233 (0%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MP++ +E RLYRQI++QLR LI GEFA SRLP+ER+L+ QLGVSRPS+REALIALEV Sbjct: 1 MPLQTVESNRLYRQIAEQLRSLIAAGEFAPASRLPAERDLARQLGVSRPSVREALIALEV 60 Query: 61 EGYIEVRMGSGIYVCAP-PMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQ 119 EG++EVR GSGIYV P P HD S E GPLEL+RARE++EGEVA AA+H + Q Sbjct: 61 EGWVEVRTGSGIYVRQPLPRGAAAGHD-SAEWGPLELMRARELVEGEVAALAARHAKRAQ 119 Query: 120 IAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERL 179 +AA+ A + M A+AGI P E D FH +A A GN VL V + AR GPLFERL Sbjct: 120 VAAMAGALARMQEQADAGIVPREGDEAFHAAVAGACGNEVLRDTVMGYWQARSGPLFERL 179 Query: 180 HSHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIR 232 +F+ W A+ EH +++A+R R+P+ AR AM H+ A RY A+ R Sbjct: 180 GDYFENPASWSAALVEHAQVLEAIRGRDPQAAREAMHLHLQRACKRYGASWRR 232