BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4180.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776711.1| ABC transporter permease [Herbaspirillum ser... 397 e-109 ref|YP_004754195.1| putative permease [Collimonas fungivorans Te... 357 9e-97 ref|YP_001172341.1| taurine ABC transporter, permease protein [P... 348 3e-94 ref|NP_880426.1| putative permease of ABC transporter [Bordetell... 338 5e-91 ref|NP_889564.1| permease of ABC transporter [Bordetella bronchi... 338 5e-91 >ref|YP_003776711.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64803.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 242/257 (94%), Positives = 250/257 (97%) Query: 1 MSSQRRVTGYRKKLAMLLAIVFILLMWQIAAWSLPSFLMPGVPTVLARLWNEVQTPAFRI 60 MSSQRRVTG RKKLAM+LAIVFILLMWQIAAWSLPSFLMPGVP+V ARLW EVQ+ FR+ Sbjct: 1 MSSQRRVTGIRKKLAMVLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFRL 60 Query: 61 ALWGSLTRLGGGYGAALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 AL+GSL RLG GYG+ALVLGIGFGL+GAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM Sbjct: 61 ALFGSLYRLGMGYGSALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 Query: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE Sbjct: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALID 240 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADM+GVMANILTIAILAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALID 240 Query: 241 QVILENLKHRLLKYQYV 257 QVILENLKHRLLKYQYV Sbjct: 241 QVILENLKHRLLKYQYV 257 >ref|YP_004754195.1| putative permease [Collimonas fungivorans Ter331] gb|AEK63372.1| putative permease of ABC transporter [Collimonas fungivorans Ter331] Length = 257 Score = 357 bits (916), Expect = 9e-97, Method: Composition-based stats. Identities = 220/257 (85%), Positives = 237/257 (92%) Query: 1 MSSQRRVTGYRKKLAMLLAIVFILLMWQIAAWSLPSFLMPGVPTVLARLWNEVQTPAFRI 60 MS+Q R+ GYRKKLAMLLAI+ I L+WQIAAWSLP FLMPGV VL RLW E TP FR Sbjct: 1 MSTQSRLVGYRKKLAMLLAILLIFLLWQIAAWSLPDFLMPGVLPVLGRLWQEALTPEFRT 60 Query: 61 ALWGSLTRLGGGYGAALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 ALWGSLTRLGGGY AA++ GIGFGL+GAVLFFFREVLKSAI+ILQSIPSIAWVPLFLILM Sbjct: 61 ALWGSLTRLGGGYAAAMLFGIGFGLVGAVLFFFREVLKSAIIILQSIPSIAWVPLFLILM 120 Query: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 GFGNLPI+VVVA+AAFFPAALSVMNATESVQQVHVSAARVMGA+R ML+RVYLPAVMPE Sbjct: 121 GFGNLPIMVVVAMAAFFPAALSVMNATESVQQVHVSAARVMGATRWDMLKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALID 240 LITGAQLAFGNAWRALISAEML+GFGKGLGRTLAY+GETADM+GVM NIL IAILAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRTLAYAGETADMVGVMTNILAIAILAALID 240 Query: 241 QVILENLKHRLLKYQYV 257 Q ILENLKHR+L+YQYV Sbjct: 241 QFILENLKHRVLRYQYV 257 >ref|YP_001172341.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri A1501] ref|YP_004714093.1| taurine ABC transporter permease [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|ABP79499.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri A1501] gb|AEA83747.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri DSM 4166] gb|AEJ05004.1| taurine ABC transporter, permease protein [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 257 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 201/257 (78%), Positives = 229/257 (89%) Query: 1 MSSQRRVTGYRKKLAMLLAIVFILLMWQIAAWSLPSFLMPGVPTVLARLWNEVQTPAFRI 60 MS RR+TG +K LA++LAI+FILL+WQ AAWSLP+FLMPG+PTV+ RL +Q P FR Sbjct: 1 MSQARRLTGPKKYLAVVLAILFILLIWQAAAWSLPAFLMPGIPTVVERLITTIQQPEFRD 60 Query: 61 ALWGSLTRLGGGYGAALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 L+GS++RLG GYG AL+ GIGFGL+G VLFFFRE+L+SAIVILQSIPSIAWVPLFLI+M Sbjct: 61 GLYGSMSRLGSGYGFALLFGIGFGLVGGVLFFFREILRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 GFGNLPI+VVVA+AAFFP ALSVMNATESVQ VHVSAARVMGASR +LRRVYLPAVMPE Sbjct: 121 GFGNLPIIVVVALAAFFPMALSVMNATESVQPVHVSAARVMGASRWQLLRRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALID 240 LITGAQLAFGNAWRALISAEML+GFG+GLGR+LAYSGE ADM+GVM NIL IAILA LID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGQGLGRSLAYSGEIADMVGVMMNILVIAILATLID 240 Query: 241 QVILENLKHRLLKYQYV 257 QV+LE K R+L+YQYV Sbjct: 241 QVVLEKFKQRMLRYQYV 257 >ref|NP_880426.1| putative permease of ABC transporter [Bordetella pertussis Tohama I] emb|CAE41996.1| putative permease of ABC transporter [Bordetella pertussis Tohama I] gb|AEE67042.1| putative permease of ABC transporter [Bordetella pertussis CS] Length = 257 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 198/257 (77%), Positives = 223/257 (86%) Query: 1 MSSQRRVTGYRKKLAMLLAIVFILLMWQIAAWSLPSFLMPGVPTVLARLWNEVQTPAFRI 60 MSS RVTG RK LA +L ++FIL +WQ AAW LP FLMPGVPTV RL ++ +F Sbjct: 1 MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTVAQRLVEDLGQASFHQ 60 Query: 61 ALWGSLTRLGGGYGAALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 +L G+L RLG GYG AL GIGFGL+ AVLFFFREVL+SAIVILQSIPSIAWVPLFLI+M Sbjct: 61 SLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 GFGN PI+VVVA++AFFPAALSVMNATESVQ+VHVSAARVMGA+R +++RVYLPAVMPE Sbjct: 121 GFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGATRWGLIKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALID 240 LITGAQLAFGNAWRALISAEML+GFGKGLGR+LAYSGE ADM GVM NIL IA+LAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID 240 Query: 241 QVILENLKHRLLKYQYV 257 Q +LENLKHRLL+YQYV Sbjct: 241 QFVLENLKHRLLRYQYV 257 >ref|NP_889564.1| permease of ABC transporter [Bordetella bronchiseptica RB50] emb|CAE33520.1| putative permease of ABC transporter [Bordetella bronchiseptica RB50] Length = 257 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 198/257 (77%), Positives = 223/257 (86%) Query: 1 MSSQRRVTGYRKKLAMLLAIVFILLMWQIAAWSLPSFLMPGVPTVLARLWNEVQTPAFRI 60 MSS RVTG RK LA +L ++FIL +WQ AAW LP FLMPGVPTV RL ++ +F Sbjct: 1 MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTVAQRLVEDLGQASFHQ 60 Query: 61 ALWGSLTRLGGGYGAALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILM 120 +L G+L RLG GYG AL GIGFGL+ AVLFFFREVL+SAIVILQSIPSIAWVPLFLI+M Sbjct: 61 SLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVM 120 Query: 121 GFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPE 180 GFGN PI+VVVA++AFFPAALSVMNATESVQ+VHVSAARVMGA+R +++RVYLPAVMPE Sbjct: 121 GFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGATRWGLVKRVYLPAVMPE 180 Query: 181 LITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMIGVMANILTIAILAALID 240 LITGAQLAFGNAWRALISAEML+GFGKGLGR+LAYSGE ADM GVM NIL IA+LAALID Sbjct: 181 LITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID 240 Query: 241 QVILENLKHRLLKYQYV 257 Q +LENLKHRLL+YQYV Sbjct: 241 QFVLENLKHRLLRYQYV 257