BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4179.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776710.1| ABC transporter periplasmic protein [Herbasp... 426 e-117 ref|YP_004415983.1| ABC transporter, substrate binding protein [... 186 3e-45 ref|YP_004754194.1| putative substrate-binding protein [Collimon... 182 6e-44 ref|YP_001631166.1| ABC transporter, substrate binding protein [... 131 8e-29 ref|ZP_06688084.1| conserved hypothetical protein [Achromobacter... 124 1e-26 >ref|YP_003776710.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64802.1| ABC-type transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 227/263 (86%), Positives = 238/263 (90%) Query: 4 MHTLVRLTVLASACLTVGAAQAGVLDDARRSDTVRIGLDHVPPVYKGGMKFRTPENIAIV 63 M L R T+L S CL VGAAQAGVLDDARRS+ +RIGLDHVPPVYKGGMKFRTPENIA V Sbjct: 1 MRALYRYTLLTSVCLLVGAAQAGVLDDARRSEQLRIGLDHVPPVYKGGMKFRTPENIATV 60 Query: 64 TAEDLAAQWKLKADLQPTTQDRAALKGVRPDIVLTRIDVAQAGAADVITVPTGYSAGGMA 123 AEDLAAQWKLKADLQP DRAALKGVRPD+VLTR+D AQA AAD +PTGYSAGGMA Sbjct: 61 LAEDLAAQWKLKADLQPNVADRAALKGVRPDVVLTRVDPAQASAADATLIPTGYSAGGMA 120 Query: 124 IMRTDTTIRKWEDLKGRTVCVSAGSPYVGTLSARYAAIEKVMPAPADSLLAVRIGQCDAA 183 IMR+DTTIRKW+DLKGRTVCVS+GSPYVGTLSARY AIEKVMPAPADSLLAVRIGQCDAA Sbjct: 121 IMRSDTTIRKWDDLKGRTVCVSSGSPYVGTLSARYGAIEKVMPAPADSLLAVRIGQCDAA 180 Query: 184 VHDDTLMKALLKLPEWKKFSAQLPPVSRQALVLQVRGNDPADLAAARQLAARWNDAFWDK 243 VHDDTL+K LLKLPEWKKFSAQL PVSRQ LVLQVRGNDPADLAAARQ AARWNDAFW Sbjct: 181 VHDDTLLKVLLKLPEWKKFSAQLAPVSRQVLVLQVRGNDPADLAAARQAAARWNDAFWLN 240 Query: 244 AIKKWVNNVAFEVYLDQNVPDCH 266 AI+KWVNNVAFEVYLDQNVPDCH Sbjct: 241 AIRKWVNNVAFEVYLDQNVPDCH 263 >ref|YP_004415983.1| ABC transporter, substrate binding protein [Pusillimonas sp. T7-7] gb|AEC19359.1| ABC transporter, substrate binding protein [Pusillimonas sp. T7-7] Length = 281 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 111/234 (47%), Positives = 146/234 (62%), Gaps = 3/234 (1%) Query: 36 TVRIGLDHVPPVYKGGMKFRTPENIAIVTAEDLAAQWKLKADLQPT-TQDRAALKGV-RP 93 T+++G+ +V P + GG K RTPE I AE LAAQ L P + AL+G +P Sbjct: 48 TLQVGMHYVVPPFVGGSKVRTPEAIDTALAEALAAQLALALQAVPAQAASKEALQGTDKP 107 Query: 94 DIVLTRIDVAQAGAADVITVPTGYSAGGMAIMRTDTTIRKWEDLKGRTVCVSAGSPYVGT 153 +VL VAQ+ + +PTGY MAIMRTDT I+ W+ LKGRTVC++ G YVG Sbjct: 108 RVVLAPASVAQSAVDSTVVIPTGYVLAPMAIMRTDTDIKSWQQLKGRTVCLAEGGRYVGA 167 Query: 154 LSARYAAIEKVMPAPADSLLAVRIGQCDAAVHDDTLMKALLKLPEWKKFSAQLPPVSRQA 213 ++ RY A E + APAD+LLA+R G+CDAAVHD+T++K+LLKLPEWKKFSA+L ++ Sbjct: 168 MAVRYGAKEMIYRAPADALLALRTGECDAAVHDETMLKSLLKLPEWKKFSAKLTEKDKEP 227 Query: 214 LVLQVRGNDPADLAAARQLAARWNDAFWDKAI-KKWVNNVAFEVYLDQNVPDCH 266 LV D ++ RQL W A+ K N++AFEVYLDQ V DCH Sbjct: 228 LVFLAAAGDEKMVSTLRQLTKEWKAKRHLAALTKSRANDIAFEVYLDQTVADCH 281 >ref|YP_004754194.1| putative substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK63371.1| putative substrate-binding protein [Collimonas fungivorans Ter331] Length = 271 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 106/250 (42%), Positives = 150/250 (60%), Gaps = 5/250 (2%) Query: 22 AAQAGVLDDARRSDTVRIGLDHVPPVYKGGMKFRTPENIAIVTAEDLAAQWKLK-ADLQP 80 +A A L R+ + +G+ +V P + G K+RT E+ A DLA + ++ ++ Sbjct: 22 SATAASLQQIRQRGQLVVGVSYVAPAHVAGAKYRTAESFDTTVAADLAQRLGVRLRTVKV 81 Query: 81 TTQDRAALKGV-RPDIVLTRIDVAQAG--AADVITVPTGYSAGGMAIMRTDTTIRKWEDL 137 T +DR L + D++L + A A A +PT Y A IMR+DT I++ L Sbjct: 82 TARDRQQLLAQGKVDLLLLNLKQADADTFGASARLLPTAYQANPKLIMRSDTDIKRLAQL 141 Query: 138 KGRTVCVSAGSPYVGTLSARYAAIEKVMPAPADSLLAVRIGQCDAAVHDDTLMKALLKLP 197 +GR++CV+ G YVG+++A Y A+EKV APAD+LLA+R G CDAAVHDD ++ +L LP Sbjct: 142 RGRSICVAQGGAYVGSMAAAYGAVEKVYKAPADALLALRTGACDAAVHDDAVLNGMLDLP 201 Query: 198 EWKKFSAQLP-PVSRQALVLQVRGNDPADLAAARQLAARWNDAFWDKAIKKWVNNVAFEV 256 EWKKFSA LP P + L VR D +Q A+ + ++W KKW++NVAFEV Sbjct: 202 EWKKFSASLPLPANPATLTFAVRPADTGLGDYLQQTASALDSSYWAGNRKKWISNVAFEV 261 Query: 257 YLDQNVPDCH 266 YLDQNVPDCH Sbjct: 262 YLDQNVPDCH 271 >ref|YP_001631166.1| ABC transporter, substrate binding protein [Bordetella petrii DSM 12804] emb|CAP42898.1| ABC transporter, substrate binding protein [Bordetella petrii] Length = 287 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 93/249 (37%), Positives = 134/249 (53%), Gaps = 18/249 (7%) Query: 31 ARRSDTVRIGLDHVPPVYKGGMKFRTPENIAIVTAEDLAAQWKLKADL-QPTTQDRAA-L 88 AR + +G+ ++ P G K RTPE + V AE L + L + Q Q RAA L Sbjct: 43 ARERGVLVVGVPYLAPPAAAGAKVRTPERLDTVLAERLGERLGLPVKVVQVEPQQRAAAL 102 Query: 89 KGVRPDIVLTRIDVAQAGAA----DVITVPTGYSAGGMAIMRTDTTIRKWEDLKGRTVCV 144 D++L Q+ A +V VP GY A A++R+DT +R+W +KGR+VC+ Sbjct: 103 ADGTVDLLLADRIAGQSDAGLDDPNVALVPAGYQARPKAVIRSDTALRRWSQVKGRSVCM 162 Query: 145 SAGSPYVGTLSARYAAIEKVMPAPADSLLAVRIGQCDAAVHDDTLMKALLKLPEWKKFSA 204 S+ + L+A + A + P+D+L+AVR G CD + DD L++ PEWKKFSA Sbjct: 163 SSAAFQAQALAAHWGATVRTFRVPSDALVAVREGACDIGLIDDAAWGPLMQFPEWKKFSA 222 Query: 205 QLP---PVSRQALVLQVRGNDPADLAAARQLAA---RW-NDAFWDKAIKKWVNNVAFEVY 257 LP PV+ + + + D A+ R LAA +W W ++KW +VAF+VY Sbjct: 223 TLPADGPVAERVWLARA-----GDEASVRWLAAAMQQWRQQGAWQAMVRKWARDVAFDVY 277 Query: 258 LDQNVPDCH 266 LDQ VPDCH Sbjct: 278 LDQEVPDCH 286 >ref|ZP_06688084.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74990.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 273 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 133/253 (52%), Gaps = 6/253 (2%) Query: 18 LTVGAAQAGVLDDARRSDTVRIGLDHVPPVYKGGMKFRTPENIAIVTAEDLAAQWKLKAD 77 L+ A+ AR + +G+ ++ P G K RTP+ + AE L A L Sbjct: 22 LSAAHAEPTGFAAARERGELVVGVPYLAPPPVAGAKIRTPDGLDANMAEKLGASLGLPVR 81 Query: 78 LQPTTQDRAA--LKGVRPDIVLTRIDVAQAGAADVITVPTGYSAGGMAIMRTDTTIRKWE 135 L+ + A L + D+VL D A A V PTGYS A++R+DT +RK Sbjct: 82 LRQVRAEEAGDLLSAGQVDVVLA--DAATGQPATVAVQPTGYSTRPKAMIRSDTRLRKPA 139 Query: 136 DLKGRTVCVSAGSPYVGTLSARYAAIEKVMPAPADSLLAVRIGQCDAAVHDDTLMKALLK 195 D++GR+VC++ L+A + A+ + P+D+L+AVR G CD + DD++ + L++ Sbjct: 140 DVQGRSVCMAEADTDARALAAAWGAVVRTYRVPSDALVAVREGACDVGLVDDSVWEPLVR 199 Query: 196 LPEWKKFSAQLPP-VSRQALVLQVRGNDPADLA-AARQLAARWNDAFWDKAIKKWVNNVA 253 PEWKKFSA LP +++ V + +D A A A ++ A W KW +VA Sbjct: 200 FPEWKKFSATLPADGAKREQVWLLPASDAAGRAWLAGEMQAWSQSGAWKAMTSKWARDVA 259 Query: 254 FEVYLDQNVPDCH 266 F+VYLDQ VPDCH Sbjct: 260 FDVYLDQEVPDCH 272