BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4172.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalo... 218 5e-55 ref|YP_003911174.1| GntR family transcriptional regulator [Burkh... 207 1e-51 ref|YP_001860702.1| GntR family transcriptional regulator [Burkh... 204 1e-50 ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkh... 203 3e-50 ref|YP_004378571.1| GntR family transcriptional regulator [Pseud... 189 3e-46 >ref|ZP_08276517.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30013.1| transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 117/235 (49%), Positives = 152/235 (64%), Gaps = 6/235 (2%) Query: 14 RAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGH 73 ++ L D VY +LRDDI+A RLLPGD+ E+D+A VSRTPVREAL RLQ +GL++G+ Sbjct: 13 KSSSLPDYVYGNLRDDIFALRLLPGDQVTESDIAAYFDVSRTPVREALQRLQRDGLMQGY 72 Query: 74 FRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGD 133 R GWEVVP+D R+ L+E+R ++EL+AV +LC + + Q L+ W C Sbjct: 73 VRGGWEVVPVDFKRYEDLFEMRRVIELYAVTRLCQEGV--GIDQSLIDGLQLTWCCPVDQ 130 Query: 134 RLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTYAEH 193 RL DGL VA LDE FH LV+A GN E T + +L +++RI+RRLDF YGDC+ TY EH Sbjct: 131 RLVDGLQVATLDEGFHQTLVRATGNLEMATTFDRLTDRVRIVRRLDFLYGDCVQLTYDEH 190 Query: 194 RAILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVR----AESVQAAPV 244 AIL AI D+A A L+ HIEDSH V +LT+ L VR AE + PV Sbjct: 191 AAILGAITTRDSAAALGLMTAHIEDSHASVRQLTLHHLHNVRVGASAERLPYLPV 245 >ref|YP_003911174.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61883.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1003] Length = 286 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 119/246 (48%), Positives = 151/246 (61%), Gaps = 6/246 (2%) Query: 12 TRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVR 71 TR D VY S+RDDI+ RLLPGDR E +A+R VSRTP REAL RLQS+GL+R Sbjct: 43 TRSTSSRADHVYFSVRDDIFDMRLLPGDRLTEGSIADRFGVSRTPAREALQRLQSDGLMR 102 Query: 72 GHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSP-RIAPAVRQQLVAEQGAIWQCA 130 G+ R GWEVVPID RF LYE+R+++E ++V +L P R +Q++ IW Sbjct: 103 GYVRGGWEVVPIDFKRFEDLYEMRKLIETYSVSRLFGPDRSLSETARQMLDRLDGIWNVP 162 Query: 131 PGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTY 190 R+ DG + ALDEAFH ALV AAGN E +++ +++R++RRLD YGDCID+TY Sbjct: 163 EAQRVRDGREMVALDEAFHEALVSAAGNAELTAAMQRVTDRIRVVRRLDLVYGDCIDETY 222 Query: 191 AEHRAILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVRAESVQAAPVPGNAPA 250 EH AIL AI A A EL+ RHIE S V LT RL++ R A P +AP Sbjct: 223 DEHVAILAAIRDLAADRAVELLGRHIEGSRAEVRTLTTERLQRAR-----TASEPHSAPY 277 Query: 251 TTPTRR 256 P R Sbjct: 278 APPRLR 283 >ref|YP_001860702.1| GntR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73656.1| transcriptional regulator, GntR family [Burkholderia phymatum STM815] Length = 260 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 119/258 (46%), Positives = 156/258 (60%), Gaps = 7/258 (2%) Query: 1 MTSSQAPADLATRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREA 60 MT + PA +A+ D VY +LR+DI+ LLPGDR E +AER VSRTP REA Sbjct: 8 MTPDERPA-IASHATLTRADRVYYALREDIFDMHLLPGDRLTEGAIAERFSVSRTPAREA 66 Query: 61 LMRLQSEGLVRGHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLV 120 L RLQS+GL++G+ R GWEVVPID RF LYE+R+M+E AVRKLC P L+ Sbjct: 67 LQRLQSDGLMQGYVRGGWEVVPIDNKRFDDLYEMRQMIETFAVRKLCDNEAPPPGLHPLL 126 Query: 121 AEQGAIWQCAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDF 180 +W+ R+ DG + LDEAFH AL+ AAGN E + +++ +++R++RRLD Sbjct: 127 DTLDGVWKVGHARRITDGRKLVELDEAFHHALIAAAGNEELTSTMQRVTDRIRVVRRLDL 186 Query: 181 AYGDCIDDTYAEHRAILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVRAESVQ 240 +GD I +TY EH AILDAI R D A + EL++RHI S V LTI RL R + + Sbjct: 187 VHGDGIAETYDEHAAILDAIRRGDGAQSVELVSRHIGGSQASVRGLTIQRLLTARTATGR 246 Query: 241 AAPVPGNAPATTPTRRKR 258 A A P R +R Sbjct: 247 ------EATAHAPARPRR 258 >ref|ZP_02882906.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gb|EDT11190.1| transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 248 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 119/247 (48%), Positives = 152/247 (61%), Gaps = 6/247 (2%) Query: 12 TRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVR 71 TR + D VY S+RDDI+ RLLPGDR E +AER VSRTP REAL RLQS+GL+R Sbjct: 5 TRSSSSRADHVYYSVRDDIFEMRLLPGDRLTEGSIAERFGVSRTPAREALQRLQSDGLMR 64 Query: 72 GHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIA-PAVRQQLVAEQGAIWQCA 130 G+ R GWEVVPIDL RF LYE+R+++E AV +L + + QQ++ A W+ Sbjct: 65 GYVRGGWEVVPIDLKRFEDLYEMRKLIETFAVGRLVAADSSLSGSVQQVLDRLDATWKVP 124 Query: 131 PGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTY 190 R+ DG + ALDEAFH ALV AA N E +++ +++R+MRRLD YGDCID+TY Sbjct: 125 RAQRIRDGREMVALDEAFHQALVTAADNAELSAAMQRVTDRIRVMRRLDLVYGDCIDETY 184 Query: 191 AEHRAILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVRAESVQAAPVPGNAPA 250 EH AILDAI + + L+ RHIE S + V LT RL+ R A P AP Sbjct: 185 DEHIAILDAIRNRETERSVALVGRHIEGSRSEVRGLTAERLQHAR-----TAMEPHGAPY 239 Query: 251 TTPTRRK 257 P R+ Sbjct: 240 APPRSRR 246 >ref|YP_004378571.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB56819.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 242 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 114/239 (47%), Positives = 150/239 (62%), Gaps = 6/239 (2%) Query: 11 ATRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLV 70 AT R L + +YA L+DDI+ FRL+PG+RF+E VAER+ SRTPVR+AL RLQ EG + Sbjct: 4 ATERPQSLAERIYAQLKDDIFEFRLMPGERFSEGQVAERMAASRTPVRQALHRLQREGFL 63 Query: 71 RGHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCS-PRIA-PAVRQQLVAEQGAIWQ 128 HFR+GW+V P+D +F LYELR +LEL AVR+LC P+ P Q L W Sbjct: 64 DVHFRSGWQVRPLDFVQFDELYELRIVLELDAVRRLCQRPKDEHPPALQDL----ARTWM 119 Query: 129 CAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDD 188 ++L DG AV+ LDEAFHC L++AAGN E V+R ++ ++RI+RRLDF ID Sbjct: 120 VRKNEQLQDGSAVSQLDEAFHCQLLEAAGNREMARVHRDVSEKIRILRRLDFTQARRIDL 179 Query: 189 TYAEHRAILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVRAESVQAAPVPGN 247 TYAEH+ IL+AI + A +L+ HIE S V +T+ RL R Q PG+ Sbjct: 180 TYAEHQRILEAILTRRSEEAQQLLKGHIEVSKAEVHSITLHRLYGARQRVEQMPEQPGH 238