BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4170.p         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_720356.1| ISSo9, nucleotidyltransferase domain-containing...    88   3e-16
ref|NP_841138.1| DNA polymerase beta-like protein [Nitrosomonas ...    87   8e-16
ref|NP_942915.1| putative nucleotidyl-transferase [Ralstonia eut...    87   1e-15
ref|YP_004485780.1| DNA polymerase beta domain-containing protei...    84   1e-14
ref|ZP_03541654.1| DNA polymerase beta domain protein region [Co...    80   1e-13

>ref|NP_720356.1| ISSo9, nucleotidyltransferase domain-containing protein
          [Shewanella oneidensis MR-1]
 ref|NP_720482.1| ISSo9, nucleotidyltransferase domain-containing protein
          [Shewanella oneidensis MR-1]
 gb|AAN52956.1| TnSon_1 nucleotidyltransferase domain protein [Shewanella
          oneidensis MR-1]
 gb|AAN53082.1| TnSon_2 nucleotidyltransferase domain protein [Shewanella
          oneidensis MR-1]
          Length = 96

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 47/48 (97%)

Query: 25 ALPGATLFDLGGLQDELEALLGLHVDLLTPGDLPPKFRAQVLAEARPV 72
          ALPGATLFDLGGLQDELE+LLGL VDLLTPGDLPPKFRAQVLAEARPV
Sbjct: 49 ALPGATLFDLGGLQDELESLLGLQVDLLTPGDLPPKFRAQVLAEARPV 96


>ref|NP_841138.1| DNA polymerase beta-like protein [Nitrosomonas europaea ATCC
          19718]
 emb|CAD84986.1| DNA polymerase beta-like domain [Nitrosomonas europaea ATCC
          19718]
          Length = 96

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/49 (91%), Positives = 48/49 (97%)

Query: 24 DALPGATLFDLGGLQDELEALLGLHVDLLTPGDLPPKFRAQVLAEARPV 72
          DALPGATLFDLGGLQ ELE+LLGLHVDLLTPGDLPPKFRA+VLAEARP+
Sbjct: 48 DALPGATLFDLGGLQVELESLLGLHVDLLTPGDLPPKFRAKVLAEARPI 96


>ref|NP_942915.1| putative nucleotidyl-transferase [Ralstonia eutropha H16]
 gb|AAP86029.1| putative nucleotidyl-transferase [Ralstonia eutropha H16]
          Length = 98

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 46/49 (93%)

Query: 24 DALPGATLFDLGGLQDELEALLGLHVDLLTPGDLPPKFRAQVLAEARPV 72
          DALPGATLFDLGGLQDELE LLG+HVDLLTP DLPPKFR +VLAEARPV
Sbjct: 50 DALPGATLFDLGGLQDELETLLGVHVDLLTPADLPPKFRMKVLAEARPV 98


>ref|YP_004485780.1| DNA polymerase beta domain-containing protein region [Delftia sp.
          Cs1-4]
 gb|AEF87425.1| DNA polymerase beta domain protein region [Delftia sp. Cs1-4]
          Length = 96

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 24 DALPGATLFDLGGLQDELEALLGLHVDLLTPGDLPPKFRAQVLAEARPV 72
          DALPGATLFDLGGLQDELE+LLGL VDLLTPGDLP KFRAQVLAEA+P+
Sbjct: 48 DALPGATLFDLGGLQDELESLLGLRVDLLTPGDLPLKFRAQVLAEAQPI 96


>ref|ZP_03541654.1| DNA polymerase beta domain protein region [Comamonas testosteroni
          KF-1]
 gb|EED65940.1| DNA polymerase beta domain protein region [Comamonas testosteroni
          KF-1]
          Length = 96

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/49 (83%), Positives = 44/49 (89%)

Query: 24 DALPGATLFDLGGLQDELEALLGLHVDLLTPGDLPPKFRAQVLAEARPV 72
          DALPGATLFDLGGLQDELE++LG+ VDLLTP DLP KFR QVL EARPV
Sbjct: 48 DALPGATLFDLGGLQDELESILGIQVDLLTPYDLPAKFRDQVLLEARPV 96