BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4169.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001830490.1| hypothetical protein XfasM23_1813 [Xylella f...   173   7e-42
ref|NP_720357.1| ISSod9 hypothetical protein [Shewanella oneiden...   173   7e-42
ref|YP_004485781.1| hypothetical protein DelCs14_0386 [Delftia s...   172   1e-41
ref|ZP_00682618.1| Protein of unknown function DUF86 [Xylella fa...   172   2e-41
ref|NP_841137.1| hypothetical protein NE1074 [Nitrosomonas europ...   171   3e-41

>ref|YP_001830490.1| hypothetical protein XfasM23_1813 [Xylella fastidiosa M23]
 gb|ACB93216.1| protein of unknown function DUF86 [Xylella fastidiosa M23]
 gb|ADN62580.1| hypothetical protein XFLM_02905 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 122

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 91/119 (76%), Positives = 102/119 (85%), Gaps = 3/119 (2%)

Query: 1   MSVNRLTDYLDHMQQAASDACSFVKGTSKAEFVDDKRTQQAVIMSLIIIGEASTKVMDRY 60
           MS NRL DYL+HMQQAA+DACSFV+G +K +F++DKRTQQAVIMSLIIIGEA TKVMDRY
Sbjct: 1   MSGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRY 60

Query: 61  PEFAQAHAEVPWRS---MRNRIAHGYFDINLDVVWDTVQTALPELLKLLPEARKSAQVQ 116
            EF QAH +VPWRS   MRNRIAHGYF+INLDVVWDTVQ+ALPELLK L  AR+ A  Q
Sbjct: 61  AEFTQAHDQVPWRSMRGMRNRIAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQ 119


>ref|NP_720357.1| ISSod9 hypothetical protein [Shewanella oneidensis MR-1]
 ref|NP_720483.1| ISSod9 hypothetical protein [Shewanella oneidensis MR-1]
 gb|AAN52957.1| TnSon_1 expressed protein of unknown function DUF86 [Shewanella
           oneidensis MR-1]
 gb|AAN53083.1| TnSon_2 expressed protein of unknown function DUF86 [Shewanella
           oneidensis MR-1]
          Length = 125

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 89/122 (72%), Positives = 94/122 (77%), Gaps = 3/122 (2%)

Query: 1   MSVNRLTDYLDHMQQAASDACSFVKGTSKAEFVDDKRTQQAVIMSLIIIGEASTKVMDRY 60
           M VNRL DYLDHM QAASDAC FV+G  K EF+ DKRTQQAVIMSLI+IGEASTKVMD Y
Sbjct: 1   MKVNRLPDYLDHMHQAASDACYFVEGLDKDEFLVDKRTQQAVIMSLIVIGEASTKVMDGY 60

Query: 61  PEFAQAHAEVPWRS---MRNRIAHGYFDINLDVVWDTVQTALPELLKLLPEARKSAQVQE 117
            EF  AH++VPWRS   MRNRIAHGYFDINLDVVWDTVQTALP LL  L   R      E
Sbjct: 61  SEFVIAHSDVPWRSMRGMRNRIAHGYFDINLDVVWDTVQTALPTLLSQLAAVRYDVDKNE 120

Query: 118 GQ 119
           G 
Sbjct: 121 GH 122


>ref|YP_004485781.1| hypothetical protein DelCs14_0386 [Delftia sp. Cs1-4]
 gb|AEF87426.1| protein of unknown function DUF86 [Delftia sp. Cs1-4]
          Length = 122

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 99/116 (85%), Gaps = 3/116 (2%)

Query: 1   MSVNRLTDYLDHMQQAASDACSFVKGTSKAEFVDDKRTQQAVIMSLIIIGEASTKVMDRY 60
           M+ +RL DYLDH+QQAA+DACSFV+G +K +F++DKRTQQAVIMSL+IIGEA TKVMD Y
Sbjct: 1   MNGHRLPDYLDHIQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLVIIGEAVTKVMDGY 60

Query: 61  PEFAQAHAEVPWRS---MRNRIAHGYFDINLDVVWDTVQTALPELLKLLPEARKSA 113
            EFAQ H +VPWR+   MRNRIAHGYFDINLD+VWDTVQTALPELL+  P  R+ A
Sbjct: 61  AEFAQTHGQVPWRNMRGMRNRIAHGYFDINLDLVWDTVQTALPELLRQWPSIRRDA 116


>ref|ZP_00682618.1| Protein of unknown function DUF86 [Xylella fastidiosa Ann-1]
 gb|EAO31829.1| Protein of unknown function DUF86 [Xylella fastidiosa Ann-1]
          Length = 122

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/119 (75%), Positives = 101/119 (84%), Gaps = 3/119 (2%)

Query: 1   MSVNRLTDYLDHMQQAASDACSFVKGTSKAEFVDDKRTQQAVIMSLIIIGEASTKVMDRY 60
           MS NRL DYL+HMQQAA+DACSFV+G +K +F++DKRTQQAVIMSLIIIGEA TKVMDRY
Sbjct: 1   MSGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRY 60

Query: 61  PEFAQAHAEVPWRS---MRNRIAHGYFDINLDVVWDTVQTALPELLKLLPEARKSAQVQ 116
            EF QAH +VPWRS   MRNRIAHGYF+INLDVVWDTVQ+ALPELLK L   R+ A  Q
Sbjct: 61  AEFTQAHDQVPWRSMRGMRNRIAHGYFEINLDVVWDTVQSALPELLKQLAAVRQDANDQ 119


>ref|NP_841137.1| hypothetical protein NE1074 [Nitrosomonas europaea ATCC 19718]
 emb|CAD84985.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 125

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/116 (75%), Positives = 101/116 (87%), Gaps = 3/116 (2%)

Query: 1   MSVNRLTDYLDHMQQAASDACSFVKGTSKAEFVDDKRTQQAVIMSLIIIGEASTKVMDRY 60
           MS +RL DYLDH+QQAA+DACSFV+G +K +F+++K+TQQAVIMSLIIIGEA TKVMD Y
Sbjct: 1   MSESRLLDYLDHIQQAATDACSFVEGLAKEDFLENKQTQQAVIMSLIIIGEAVTKVMDGY 60

Query: 61  PEFAQAHAEVPWRS---MRNRIAHGYFDINLDVVWDTVQTALPELLKLLPEARKSA 113
            EFAQAHA+VPWR+   MRNRIAHGYFDINLDVVWDTVQ ALPELLK LP  R+ A
Sbjct: 61  AEFAQAHAQVPWRNMRGMRNRIAHGYFDINLDVVWDTVQAALPELLKQLPAVRQDA 116