BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4168.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02883875.1| transcriptional regulator, LysR family [Burkh... 479 e-133 ref|YP_003909392.1| LysR family transcriptional regulator [Burkh... 474 e-132 ref|YP_004231694.1| LysR family transcriptional regulator [Burkh... 473 e-131 ref|ZP_03570290.1| HTH-type transcriptional activator TtdR [Burk... 462 e-128 ref|ZP_03264797.1| transcriptional regulator, LysR family [Burkh... 461 e-128 >ref|ZP_02883875.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT10535.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 302 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 241/302 (79%), Positives = 269/302 (89%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M+DTV PADL FFS LA +GSLSAA RELGLT AAVSK LT ME+RAGV LVNRTTRRMM Sbjct: 1 MRDTVQPADLSFFSTLAASGSLSAAARELGLTAAAVSKRLTQMESRAGVALVNRTTRRMM 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 LTPEGELYLEHARRILD+IDEL+ELLGS+K+ P+GLLRVNATLGFGRSHVAP IS FV + Sbjct: 61 LTPEGELYLEHARRILDEIDELAELLGSAKKSPKGLLRVNATLGFGRSHVAPAISHFVAK 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 +PQVSVQLQLSV PPPLT+D+FDVCIRFGEPPDTRV+ARRLA+N RLLCA+P Y+ GM Sbjct: 121 YPQVSVQLQLSVTPPPLTDDTFDVCIRFGEPPDTRVIARRLAANRRLLCAAPSYIASHGM 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P TPHDL++HNC+GIRQGDEAYGVW+LSSG GAS KTE V+I+G LTTNDGEIAVKWAL+ Sbjct: 181 PMTPHDLTRHNCIGIRQGDEAYGVWRLSSGKGASLKTEAVRIKGTLTTNDGEIAVKWALE 240 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGILMRAEWDI+ YL G LV VLPG+ TPNADIFAVYSQR Q+S R+R+FVDFIAREL Sbjct: 241 GHGILMRAEWDIKQYLADGSLVVVLPGYDTPNADIFAVYSQRHQMSNRIRAFVDFIAREL 300 Query: 301 AE 302 E Sbjct: 301 GE 302 >ref|YP_003909392.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN60101.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 304 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 237/302 (78%), Positives = 269/302 (89%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M DTV PADL FFS LA +GSLSAA RELGLT AAVSK LT ME+RAGV LVNRTTRRMM Sbjct: 1 MPDTVQPADLSFFSTLAASGSLSAAARELGLTAAAVSKRLTQMESRAGVALVNRTTRRMM 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 LTPEGELYL+HARRILD+IDEL+ELLGS+K+ P+GLLRVNATLGFGRSHV P IS+FV + Sbjct: 61 LTPEGELYLQHARRILDEIDELAELLGSAKKSPKGLLRVNATLGFGRSHVGPAISRFVAK 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 +PQVSVQLQLSV PPPLT+D+FDVCIRFGEPPDTRVVARRLA N RLLCA+P Y+ GM Sbjct: 121 YPQVSVQLQLSVTPPPLTDDTFDVCIRFGEPPDTRVVARRLAGNRRLLCAAPSYIASHGM 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P TPHDL++HNC+GIRQGDEAYGVW+L+SG GAS+KTE V+I+G LTTNDGEIAVKWAL+ Sbjct: 181 PMTPHDLTRHNCIGIRQGDEAYGVWRLTSGKGASQKTEAVRIKGTLTTNDGEIAVKWALE 240 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGIL+RAEWDI+ YL G LV VLPG+ TPNADIFAVYSQR Q+S R+R+FVDF+AR+L Sbjct: 241 GHGILLRAEWDIKQYLADGSLVVVLPGYDTPNADIFAVYSQRHQMSNRIRAFVDFVARDL 300 Query: 301 AE 302 AE Sbjct: 301 AE 302 >ref|YP_004231694.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX58634.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 304 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 238/302 (78%), Positives = 268/302 (88%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M+DTV PADL FFS LA +GSLSAA RELGLT AAVSK LT ME+RAGV LVNRTTRRMM Sbjct: 1 MRDTVQPADLSFFSTLAASGSLSAAARELGLTAAAVSKRLTQMESRAGVALVNRTTRRMM 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 LTPEGELYL HARRILD+IDEL+ELLGS+K+ P+GLLRVNATLGFGRSHVAP IS+FV + Sbjct: 61 LTPEGELYLGHARRILDEIDELAELLGSAKKSPKGLLRVNATLGFGRSHVAPAISRFVAK 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 +PQVSVQLQLSV PPPLT+D+FDVCIRFGEPPDTRV+ARRLA N RLLCA+P Y+ GM Sbjct: 121 YPQVSVQLQLSVTPPPLTDDTFDVCIRFGEPPDTRVIARRLAGNRRLLCAAPAYIAAHGM 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P TPHDL++HNC+GIRQGDEAYGVW+L+SG GAS+KTE V+I+G LTTNDGEIAVKWAL+ Sbjct: 181 PMTPHDLTRHNCIGIRQGDEAYGVWRLTSGKGASQKTEAVRIKGTLTTNDGEIAVKWALE 240 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGILMRAEWDI+ YL G LV VLPG TPNADIFAVYSQR Q+S R+R+FVDF+AREL Sbjct: 241 GHGILMRAEWDIKQYLADGSLVVVLPGHDTPNADIFAVYSQRHQMSNRIRAFVDFVAREL 300 Query: 301 AE 302 E Sbjct: 301 GE 302 >ref|ZP_03570290.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2M] ref|ZP_03576933.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2] gb|EEE08510.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2] gb|EEE16197.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans CGD2M] Length = 302 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 233/301 (77%), Positives = 268/301 (89%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M DTV PADL FFS LA +GSLSAA RELGLT AAVSK LT ME RAGV LVNRTTRRMM Sbjct: 1 MTDTVQPADLAFFSTLAASGSLSAAARELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMM 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 LTPEG++YL++ARRILDQ+DEL ELLGS+K+RP+GLLRVNATLGFGRSHV P IS+FV R Sbjct: 61 LTPEGDVYLDYARRILDQMDELGELLGSAKQRPKGLLRVNATLGFGRSHVGPAISRFVAR 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 +P+VSVQLQLSVMPPPLT+D+FDVCIRFGEPPDTRVVARRLASN RLLCA+P YL R G Sbjct: 121 YPEVSVQLQLSVMPPPLTDDAFDVCIRFGEPPDTRVVARRLASNRRLLCAAPAYLARHGT 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P TPH+L++HNC+GIRQGDE YG+W+L++G GA+R+TE V+I GNLTTNDGEIAVKWALD Sbjct: 181 PGTPHELTRHNCIGIRQGDEGYGIWRLTTGRGAARRTEAVRINGNLTTNDGEIAVKWALD 240 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGILMRAEWDIR YL GRLV VLP ++TP+ADI+AVY+QR Q+STR+R+FVDF+A EL Sbjct: 241 GHGILMRAEWDIRDYLADGRLVVVLPDYETPSADIYAVYAQRHQMSTRIRAFVDFLAAEL 300 Query: 301 A 301 Sbjct: 301 G 301 >ref|ZP_03264797.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EEA03589.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 308 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 236/300 (78%), Positives = 264/300 (88%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M+DTV P+DL FFS LA +GSLSAA RELGLT AAVSK LT ME RAGV LVNRTTRRMM Sbjct: 1 MRDTVQPSDLSFFSTLAASGSLSAAARELGLTAAAVSKRLTQMEQRAGVVLVNRTTRRMM 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 LTPEGELYLEHARRILD+IDEL+ELLGS+K+ P+GLLRVNATLGFGRSH+ P IS+FV R Sbjct: 61 LTPEGELYLEHARRILDEIDELAELLGSAKKTPKGLLRVNATLGFGRSHIGPAISRFVAR 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 +PQVSVQLQLSV PPPLT+DSFDVCIRFGEPPDTRVVARRLA N RLLCA+P YL GM Sbjct: 121 YPQVSVQLQLSVTPPPLTDDSFDVCIRFGEPPDTRVVARRLAPNRRLLCAAPSYLAAHGM 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P T HDL++HNC+GIRQGD+AYGVW+L+SG GA+RKTE V+I+G LTTNDGEIAVKWAL+ Sbjct: 181 PLTAHDLTRHNCIGIRQGDQAYGVWRLTSGRGAARKTEAVRIKGTLTTNDGEIAVKWALE 240 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGILMRAEWDIR YL G LVQ+LP TPNADIFAVYS R Q+S R+R+FV+FIAREL Sbjct: 241 GHGILMRAEWDIRQYLADGSLVQLLPDHDTPNADIFAVYSPRHQMSNRIRAFVEFIAREL 300