BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4165.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08276294.1| major facilitator family transporter [Oxaloba...   133   9e-30
ref|YP_788956.1| putative transporter [Pseudomonas aeruginosa UC...   104   4e-21
ref|ZP_08182208.1| arabinose efflux permease family protein [Xan...    99   3e-19
ref|YP_003978687.1| major facilitator protein [Achromobacter xyl...    98   3e-19
ref|YP_001970680.1| putative transporter [Stenotrophomonas malto...    93   2e-17

>ref|ZP_08276294.1| major facilitator family transporter [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30233.1| major facilitator family transporter [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 399

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 101/136 (74%), Positives = 118/136 (86%)

Query: 1   MGFGAVGLVGNWLGGLWVDQKPLATTALFCAILALGMAGSMLLSQAGWAFALALAVWGIA 60
           MGFGAVGL+GNWLGGLWVD+KPLATTA+F A+LA+GM  SM+L+     FA+AL  WGIA
Sbjct: 256 MGFGAVGLIGNWLGGLWVDKKPLATTAMFSALLAVGMTASMVLADTSIGFAIALGSWGIA 315

Query: 61  NTALYPICQIRVMKAASGAQALAGTLNVSAANGGIALGAAVGGAALSSWGAGQVGYLAAA 120
           NTALYPICQIRVMKAAS AQALAGT+NVSAANGGIALGA +GG ++S WGAG VGY++AA
Sbjct: 316 NTALYPICQIRVMKAASQAQALAGTINVSAANGGIALGAVLGGLSISVWGAGNVGYVSAA 375

Query: 121 IALLAVVMAALVARLS 136
           IA+LAV  AALV+ L+
Sbjct: 376 IAVLAVGAAALVSTLT 391


>ref|YP_788956.1| putative transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gb|ABJ13436.1| putative transporter [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 394

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 1   MGFGAVGLVGNWLGGLWVDQKPLATTALFCAILALGMAGSMLLSQAGWAFALALAVWGIA 60
           MGFGAVGL GNWLGG  VD+ PL  TALF  +LALGMA S+ L+     F LALA+WG+A
Sbjct: 256 MGFGAVGLFGNWLGGRLVDRSPLRATALFLVLLALGMAASVPLAGQPLLFCLALALWGVA 315

Query: 61  NTALYPICQIRVMKAASGAQALAGTLNVSAANGGIALGAAVGGAALSSWGAGQVGYLAAA 120
           NTALYP+CQ+RVM++   AQALA T NV+AAN GI LGA +GG  +++ G  ++G++AAA
Sbjct: 316 NTALYPVCQVRVMRSVQHAQALAATSNVAAANAGIGLGALLGGETIATLGLERIGFVAAA 375

Query: 121 IALLAVVMAALVARLSRR 138
           +A+L + +  +VARL+RR
Sbjct: 376 LAVLGLALLPVVARLARR 393


>ref|ZP_08182208.1| arabinose efflux permease family protein [Xanthomonas gardneri ATCC
           19865]
 gb|EGD20159.1| arabinose efflux permease family protein [Xanthomonas gardneri ATCC
           19865]
          Length = 399

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 80/137 (58%), Positives = 102/137 (74%)

Query: 1   MGFGAVGLVGNWLGGLWVDQKPLATTALFCAILALGMAGSMLLSQAGWAFALALAVWGIA 60
           MGFGA+GL+GNWLGG  VD+ PL  TA+F  +LALGMA  + L++ G   +L LAVWGIA
Sbjct: 263 MGFGAIGLIGNWLGGRVVDRSPLRATAVFLLLLALGMALCVPLAKTGVLLSLTLAVWGIA 322

Query: 61  NTALYPICQIRVMKAASGAQALAGTLNVSAANGGIALGAAVGGAALSSWGAGQVGYLAAA 120
            TAL+PI Q+RVM + + +QALAGT NVSAAN GI +GA +GG  + +WG G +GY+AAA
Sbjct: 323 YTALFPISQVRVMNSVTHSQALAGTTNVSAANAGIGIGAIIGGLVIPAWGLGSIGYVAAA 382

Query: 121 IALLAVVMAALVARLSR 137
           +ALL VV+  LV R  R
Sbjct: 383 VALLGVVLIPLVHRARR 399


>ref|YP_003978687.1| major facilitator protein [Achromobacter xylosoxidans A8]
 gb|ADP15972.1| major facilitator superfamily protein 24 [Achromobacter
           xylosoxidans A8]
          Length = 397

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 98/135 (72%)

Query: 1   MGFGAVGLVGNWLGGLWVDQKPLATTALFCAILALGMAGSMLLSQAGWAFALALAVWGIA 60
           MGFGA GL GNWLGGL  D+ PLA T +F  +L LGM  ++ L+ +      ALAVW IA
Sbjct: 257 MGFGAAGLAGNWLGGLAADRNPLAATLVFTLLLGLGMMAAVPLAASLAGLLPALAVWSIA 316

Query: 61  NTALYPICQIRVMKAASGAQALAGTLNVSAANGGIALGAAVGGAALSSWGAGQVGYLAAA 120
           NTALYP+CQ+RVMK A  AQA+AGTLNVSAAN GI  GA +GG A++ WG G VGY+AAA
Sbjct: 317 NTALYPVCQVRVMKVAPHAQAMAGTLNVSAANAGIGAGAMLGGFAIAQWGLGSVGYVAAA 376

Query: 121 IALLAVVMAALVARL 135
           +A+LA +    +ARL
Sbjct: 377 VAMLAALAVPAIARL 391


>ref|YP_001970680.1| putative transporter [Stenotrophomonas maltophilia K279a]
 emb|CAQ44366.1| probable transporter [Stenotrophomonas maltophilia K279a]
          Length = 406

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/92 (65%), Positives = 75/92 (81%)

Query: 1   MGFGAVGLVGNWLGGLWVDQKPLATTALFCAILALGMAGSMLLSQAGWAFALALAVWGIA 60
           MGFGAVGL+GN LGG WVD+ PL  T +FCA+LALG+  S+ L+  G    +ALA+WG+A
Sbjct: 258 MGFGAVGLIGNALGGRWVDRAPLGATLVFCAVLALGVLASVGLAGHGTFVLIALALWGVA 317

Query: 61  NTALYPICQIRVMKAASGAQALAGTLNVSAAN 92
           +TAL+P+CQ+RVM+AA  AQALAGTLNVSAAN
Sbjct: 318 HTALFPLCQVRVMRAAPQAQALAGTLNVSAAN 349