BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4163.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08275685.1| Transcriptional regulator [Oxalobacteraceae b... 315 5e-84 ref|ZP_08182209.1| transcriptional regulator, LysR family [Xanth... 306 2e-81 gb|EGH57870.1| LysR family transcriptional regulator [Pseudomona... 291 8e-77 ref|YP_003978688.1| LysR family transcriptional regulator [Achro... 287 1e-75 ref|YP_001970679.1| putative LysR family transcriptional regulat... 280 2e-73 >ref|ZP_08275685.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gb|EGF30835.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 263 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 161/258 (62%), Positives = 202/258 (78%) Query: 62 LKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSGRLRVDMPATFG 121 +K+PL +R RR+ +TDAG+ FY+VC RVLDEL+ AE +L+ E PSGRLR+D+PATFG Sbjct: 1 MKKPLFERTTRRLTMTDAGEEFYKVCARVLDELEVAEGILSGGESIPSGRLRIDLPATFG 60 Query: 122 RLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWPATLGYTCLGHE 181 R++ S+LAF +K+PQV P VSFTDRFVD+VE+GLDVVVRIGG D WPA +GY LGHE Sbjct: 61 RIQAFASVLAFTDKYPQVLPHVSFTDRFVDIVEDGLDVVVRIGGDDTWPAAVGYKDLGHE 120 Query: 182 ELVFCAAPSYLARRGEPRTLEELQIHDAVLYARADGSSSPWLIKDGDQPVVRQHAEGRII 241 EL+FCAAPSYL+ G+P +L HD VLY +ADGS+SP LI++ +P+ RQ GRI+ Sbjct: 121 ELIFCAAPSYLSAHGQPHRAADLLDHDLVLYGKADGSTSPLLIQEEQKPLARQQVNGRIV 180 Query: 242 LGQAEAQVAAVQAGLGIAQLATWVVEQALREGSLVAILPAHVTQGLPLHIVWQRSREHSA 301 L QAEAQVAAV+ GLGIAQLATW+VEQ +R+G L+ ILP TQGLPLH++WQRSREH+ Sbjct: 181 LAQAEAQVAAVERGLGIAQLATWLVEQQIRDGRLIRILPLLATQGLPLHLIWQRSREHAP 240 Query: 302 KVRAAVGHFERTLGIGAM 319 KV+A + H E TL I M Sbjct: 241 KVQALIAHLEATLSIRPM 258 >ref|ZP_08182209.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] gb|EGD20160.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC 19865] Length = 303 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 156/270 (57%), Positives = 204/270 (75%) Query: 29 VATEGAGSFTAAAERLHLTNSAVGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCV 88 V+ AGSFTAAAERL LT+SAVGKA+ARLE RL L R RR+ LTDAG AFY+VCV Sbjct: 14 VSAADAGSFTAAAERLSLTSSAVGKAIARLEARLGVRLFARTTRRLALTDAGAAFYRVCV 73 Query: 89 RVLDELKSAEDMLASDELAPSGRLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDR 148 +VLDEL+ AE +L ++ AP+GRLR+D+P +FGR + + LL F +++P + P +SFTDR Sbjct: 74 KVLDELEEAEHVLRAEGQAPTGRLRLDLPVSFGRRKVLPVLLPFFQRYPGLQPSISFTDR 133 Query: 149 FVDLVEEGLDVVVRIGGGDVWPATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHD 208 FVD+ EEG+D+ VRIGG D W ++LG+ LGHE+ VFCAAP YLA RG P ++ L HD Sbjct: 134 FVDMAEEGIDIAVRIGGPDQWHSSLGHRYLGHEKRVFCAAPQYLAHRGTPDSIAALLAHD 193 Query: 209 AVLYARADGSSSPWLIKDGDQPVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQ 268 AVLY +A+ SSSPWL++ G PV ++ + R++ G AEAQV AV AGLGIAQL TW+++ Sbjct: 194 AVLYGQANRSSSPWLLRHGAGPVEQRAMDARVVFGNAEAQVDAVVAGLGIAQLPTWLIDH 253 Query: 269 ALREGSLVAILPAHVTQGLPLHIVWQRSRE 298 L+ GSLVA+LP T+GLPLH+VW R+R+ Sbjct: 254 HLQRGSLVAVLPQCDTEGLPLHLVWMRARQ 283 >gb|EGH57870.1| LysR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 302 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 153/288 (53%), Positives = 200/288 (69%), Gaps = 3/288 (1%) Query: 29 VATEGAGSFTAAAERLHLTNSAVGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCV 88 VA AGSFTAAAERL+LTNSA+ K+VARLE RL L +R R + LT+ G A+Y VC Sbjct: 14 VAVANAGSFTAAAERLNLTNSALSKSVARLENRLGMRLFERTTRSLALTEEGAAYYVVCT 73 Query: 89 RVLDELKSAEDMLASDELAPSGRLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDR 148 R+L EL+ AE LA+ P+G+LR+D+PATFGRL + +L FA +HP++ P+V+FTDR Sbjct: 74 RMLAELEDAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILEFAGQHPKLRPRVTFTDR 133 Query: 149 FVDLVEEGLDVVVRIGGGDVWPATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHD 208 FVDL+E+G+D+ VRIGG VWPA + + LG E ++FCAAP+YL R G P T E+L H Sbjct: 134 FVDLLEDGIDLAVRIGGSQVWPAGVAHRYLGTERVIFCAAPAYLHRHGTPETFEDLADHA 193 Query: 209 AVLYARADGSSSPWLIKDGDQPVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQ 268 +L+ R DGSSSPWL D + E R+++G EAQVAAV++ GIAQLATW+++ Sbjct: 194 CILFGRGDGSSSPWLFVDDQGQAEARAVEARLVIGNGEAQVAAVKSAWGIAQLATWLIKD 253 Query: 269 ALREGSLVAILPAHVTQGLPLHIVWQRSREHSAKVRAAVGHFERTLGI 316 L+ G LV ILP T+GL LH+ W RSRE KV+A V ER G+ Sbjct: 254 QLQRGELVEILPQLATEGLALHLAWPRSRESLPKVQALV---ERLSGV 298 >ref|YP_003978688.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15973.1| bacterial regulatory helix-turn-helix protein, LysR family protein 80 [Achromobacter xylosoxidans A8] Length = 302 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 159/288 (55%), Positives = 194/288 (67%) Query: 29 VATEGAGSFTAAAERLHLTNSAVGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCV 88 V T AGSFTAAA+RLHLT SAVGK+VARLE RL+ L +R RR+ LTDAG A+Y+ CV Sbjct: 14 VTTADAGSFTAAADRLHLTASAVGKSVARLEARLRTRLFERSTRRLALTDAGSAYYRTCV 73 Query: 89 RVLDELKSAEDMLASDELAPSGRLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDR 148 RVL EL+ AE +LA+ P GRLRVD+PATFGR + LL FA++HPQ+ P VSFTDR Sbjct: 74 RVLAELQDAEAVLAAQRQEPVGRLRVDLPATFGRRVALPLLLQFAQRHPQLRPCVSFTDR 133 Query: 149 FVDLVEEGLDVVVRIGGGDVWPATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHD 208 FVDL + G+DV VRIGG W LG+ LG E ++FCA+P YLARRG P T ++L HD Sbjct: 134 FVDLADVGIDVAVRIGGPPQWAPGLGHRYLGSERVIFCASPQYLARRGTPLTADDLAQHD 193 Query: 209 AVLYARADGSSSPWLIKDGDQPVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQ 268 AV Y RADG W I G P + +G + L AEAQV AV AG GIAQLATW+ Sbjct: 194 AVAYGRADGEPPVWRIAQGAGPASLRSVDGVMTLDSAEAQVDAVAAGFGIAQLATWLAAD 253 Query: 269 ALREGSLVAILPAHVTQGLPLHIVWQRSREHSAKVRAAVGHFERTLGI 316 ALR+G +V +LP +GLPL++VW S++ KV A V L I Sbjct: 254 ALRDGRVVEVLPQLAAEGLPLYLVWPLSKQLLPKVDAVVEMLGEALSI 301 >ref|YP_001970679.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] emb|CAQ44365.1| putative LysR-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 305 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 165/293 (56%), Positives = 204/293 (69%), Gaps = 4/293 (1%) Query: 29 VATEGAGSFTAAAERLHLTNSAVGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCV 88 VAT AGSFTAAAERLHLT+SAVGK +ARLE RL L +R RR+ LT+AG+ FY+ CV Sbjct: 14 VATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCV 73 Query: 89 RVLDELKSAEDMLASDELAPSGRLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDR 148 RVL EL AE +L S AP GRLRVD PATFGRL+ LL A + PQ+ PQV+F+DR Sbjct: 74 RVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVTFSDR 133 Query: 149 FVDLVEEGLDVVVRIGGGDVWPATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHD 208 F DL E+G+D+ VRIGG + PATLG LG+E L FCA+P+YL R G+PR+ EL HD Sbjct: 134 FSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAELAGHD 193 Query: 209 AVLYARADGSSSPWLIKDGDQPVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQ 268 VL+ RADGS PW + DG Q A R+++G AEAQVAAV+AG GIAQLATW+V+ Sbjct: 194 GVLFGRADGSIGPWQVADGRQRSTPLQARARLVVGSAEAQVAAVEAGFGIAQLATWLVDD 253 Query: 269 ALREGSLVAILPAHVTQGLPLHIVWQRSREHSAKVRAAVGHFERTLGIGAMID 321 AL GSLV+ILP+ +GLPL ++W + R+ +V A+ LG G ID Sbjct: 254 ALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDR----LGAGLQID 302