BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4159.p         (248 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_529335.1| hypothetical protein Sde_3868 [Saccharophagus d...   145   4e-33
ref|ZP_01916558.1| hypothetical protein LMED105_14410 [Limnobact...   135   6e-30
ref|ZP_01452233.1| hypothetical protein SPV1_09153 [Mariprofundu...   129   3e-28

>ref|YP_529335.1| hypothetical protein Sde_3868 [Saccharophagus degradans 2-40]
 gb|ABD83123.1| hypothetical protein Sde_3868 [Saccharophagus degradans 2-40]
          Length = 223

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 29  MSARNWLL---SLTASTCLLLGDPAQAEPAQPFTSAAQEQAAGTKGVVLISANWGRSWGC 85
           M+  N++L   S+  S C  +  P + +     T         T GVVL+  NWGR WGC
Sbjct: 1   MNRNNYILIAMSVLVSACAGVTQPIKMQATSVVTEEIYANTKSTNGVVLLDVNWGRWWGC 60

Query: 86  GRNDYAQLQLLGFDKIEPGTRPLSQRPELVIQGAESGNAQQIPFSNYAFLVDPGEYEFSL 145
           G ++ AQL  L FDK+   T      P LV+  + S  A    F+NYA+ + PGEY  S 
Sbjct: 61  GGHENAQLISLAFDKLPVNTFNSEAEPALVLH-SPSRLAVDPQFTNYAYSLTPGEYAISA 119

Query: 146 YLIHVARSMTQTAHFSGDRKSLFQDGRSKVGSFKVGAGEIVYVGHFALDCVQAPMPWRFY 205
           + I VA S+++    + +R +L+ +G+   G+F V   E+V++G+F LDC  +P  WR++
Sbjct: 120 FSIKVADSVSKVGFLTAERDTLYSEGKPIGGTFTVRPREVVFIGNFFLDCTYSPTLWRYH 179

Query: 206 PETRADFTQYLDKVKQQYPDLDTSKAVFRLFETKLIGKPYVL 247
           P+ +  F   L++ + ++P +D +   FRLF T+  G  Y L
Sbjct: 180 PDGKEAFKSQLEEYENRFPYIDMTDVQFRLFNTEQFGNSYEL 221


>ref|ZP_01916558.1| hypothetical protein LMED105_14410 [Limnobacter sp. MED105]
 gb|EDM82214.1| hypothetical protein LMED105_14410 [Limnobacter sp. MED105]
          Length = 236

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 29  MSARNWLLSLTASTCLLLGDPAQAEPAQPFTSAAQEQAAGTKGVVLISANWGRSWGCGRN 88
           +S   +L  L  +  LL   PA A  A+P     ++      G +++  NWGR+W CG+ 
Sbjct: 20  ISMSKYLPHLILTAGLL---PAIATAAEP-VKLTEDTYKADLGAIVVQINWGRAWKCGQF 75

Query: 89  DYAQLQLLGFDKIEPGTRPLSQRPELVIQGAESGNAQQIPFSNYAFLVDPGEYEFSLYLI 148
           + AQLQ L F K  P     S    L        + Q +P   Y  +++PG+Y  + + +
Sbjct: 76  ENAQLQALTFTK-SPIAAETSSTLALEPPSKLFADNQYLP---YVLVIEPGDYVLTAFDV 131

Query: 149 HVARSMTQTAHFSGDRKSLFQDGRSKVGSFKVGAGEIVYVGHFALDCVQAPMPWRFYPET 208
            VARS ++ AH  G +  L +DG+   GSF V  GEIVY+GHF LDC   P  WR Y E 
Sbjct: 132 KVARSSSEVAHIKGSKDDLIKDGKPIGGSFTVSPGEIVYIGHFGLDCGAEPFLWRNYIEG 191

Query: 209 RADFTQYLDKVKQQYPDLDTSKAVFRLFETKLIGKPYVL 247
           + DF +Y+   +Q++P +      F LFET L G  Y L
Sbjct: 192 QQDFERYVAGFRQKFPFVKNVPVRFGLFETTLFGNSYSL 230


>ref|ZP_01452233.1| hypothetical protein SPV1_09153 [Mariprofundus ferrooxydans PV-1]
 gb|EAU54850.1| hypothetical protein SPV1_09153 [Mariprofundus ferrooxydans PV-1]
          Length = 217

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 18/185 (9%)

Query: 71  GVVLISANWGRSWGCGRNDYAQLQLLGFDKIEPGTRPLSQRPELVIQGAESGNAQQIP-- 128
           GVVL+  NWGR WGCG  + AQL  L F+K+  G +          QG  S    + P  
Sbjct: 41  GVVLLDVNWGRRWGCGSFENAQLASLKFEKVPVGEQ----------QGKYSKIFLESPSR 90

Query: 129 ------FSNYAFLVDPGEYEFSLYLIHVARSMTQTAHFSGDRKSLFQDGRSKVGSFKVGA 182
                 F +Y F+V PG+Y F+ + +  ARS+    +F   R  L   G    G+F+V A
Sbjct: 91  LFVDNKFLSYGFMVKPGKYAFTGWSVKAARSVRDVGYFRAGRDKLVNGGSYPGGTFEVAA 150

Query: 183 GEIVYVGHFALDCVQAPMPWRFYPETRADFTQYLDKVKQQYPDLDTSKAVFRLFETKLIG 242
            E++Y+G+  LDC+Q P+PWR+Y E + +F ++ ++ K ++  L   +  +RL +T+  G
Sbjct: 151 NEVIYIGNMFLDCLQTPIPWRYYTEGKDNFLRHEEQYKTKFKFLKGREITYRLLDTRYFG 210

Query: 243 KPYVL 247
            PY L
Sbjct: 211 SPYSL 215