BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4156.p         (57 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774624.1| transcriptional regulator [Bradyrhizobium japon...    61   5e-08
ref|ZP_02463989.1| transcriptional regulator, TetR family protei...    60   9e-08
ref|ZP_02463887.1| transcriptional regulator, TetR family protei...    59   2e-07
ref|YP_001862847.1| TetR family transcriptional regulator [Burkh...    57   7e-07
ref|ZP_02911372.1| transcriptional regulator, TetR family [Burkh...    57   8e-07

>ref|NP_774624.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53249.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 187

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 1   MLASHAPMTGKQSTRRAEAIFAAVAGAQLIARSRRDITVYDELIRSYFSAGLLPS 55
           +LA+ AP +  +S RRA AIFAA+ GAQL+ARSR D+++YD LI SY +AGLLP+
Sbjct: 133 VLAAAAPSSSGESERRARAIFAAIGGAQLLARSRSDLSLYDTLIDSYRAAGLLPA 187


>ref|ZP_02463989.1| transcriptional regulator, TetR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 240

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 2   LASHAPMTGKQSTRRAEAIFAAVAGAQLIARSRRDITVYDELIRSYFSAGLLPS 55
           L+S   +  K+S +RA AIFAAVAGAQLIARSR D+++YD LI  Y +AGLLP+
Sbjct: 187 LSSAEVVDSKRSDQRARAIFAAVAGAQLIARSRSDVSLYDTLIDGYRAAGLLPA 240


>ref|ZP_02463887.1| transcriptional regulator, TetR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 172

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 1   MLASHAPMTGKQSTRRAEAIFAAVAGAQLIARSRRDITVYDELIRSYFSAGLLPS 55
           +L++   +  +QS +RA AIFAAVAGAQLIARSR DI+VYD LI  Y +AGLLP+
Sbjct: 118 VLSAANAVRPEQSEQRARAIFAAVAGAQLIARSRSDISVYDALIEGYRAAGLLPA 172


>ref|YP_001862847.1| TetR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC75801.1| transcriptional regulator, TetR family [Burkholderia phymatum
           STM815]
          Length = 196

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 1   MLASHAPMTGKQSTRRAEAIFAAVAGAQLIARSRRDITVYDELIRSYFSAGLLP 54
           +L + A +    S +RA AIFAAVAGAQLIARSR DI+++DELI SY  +GLLP
Sbjct: 137 VLVAAAMVDSGNSEQRARAIFAAVAGAQLIARSRSDISLFDELIESYRVSGLLP 190


>ref|ZP_02911372.1| transcriptional regulator, TetR family [Burkholderia ambifaria
           MEX-5]
 gb|EDT37495.1| transcriptional regulator, TetR family [Burkholderia ambifaria
           MEX-5]
          Length = 191

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 1   MLASHAPMTGKQSTRRAEAIFAAVAGAQLIARSRRDITVYDELIRSYFSAGLLPS 55
           +L++   +  K+S +RA AIFAAVAGAQLIARSR D+ +YD LI  Y +AGLLP+
Sbjct: 137 VLSAAEVVDSKRSGQRARAIFAAVAGAQLIARSRSDVALYDTLIDGYRAAGLLPA 191