BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4155.p (623 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776878.1| nucleoside-diphosphate-sugar epimerase [Herb... 538 e-150 ref|YP_587793.1| NmrA/ Nucleoside-diphosphate-sugar epimerase (e... 484 e-134 ref|YP_004680521.1| NAD-dependent epimerase/dehydratase [Cupriav... 481 e-133 ref|YP_004227810.1| NAD-dependent epimerase/dehydratase [Burkhol... 477 e-132 ref|YP_004350454.1| NAD-dependent epimerase/dehydratase [Burkhol... 466 e-129 >ref|YP_003776878.1| nucleoside-diphosphate-sugar epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ64970.1| nucleoside-diphosphate-sugar epimerase protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 275/308 (89%), Positives = 295/308 (95%) Query: 308 MSRIALFGAAGAIGQSIASAISAQGLPYRVVGRNEASLRKAFGADPLAEIVSWNPDSPAS 367 MS+IALFGAAGAIG+SIASAISAQG YRVVGR+E +LR+ FGADP AEIVSW+PDSPAS Sbjct: 1 MSKIALFGAAGAIGRSIASAISAQGQHYRVVGRSEETLRQTFGADPRAEIVSWDPDSPAS 60 Query: 368 VEAAAQGIDTLIYLVGVNYTQFELHPELMRKTLDGAISAGVKQVLLIGTVYPYGLPQTSP 427 VEAAA GIDTLIYLVGV+YT+FELHPELMRKTL GAISAGV+Q+LLIGTVYPYGLPQT+P Sbjct: 61 VEAAAHGIDTLIYLVGVHYTRFELHPELMRKTLAGAISAGVRQILLIGTVYPYGLPQTTP 120 Query: 428 LREDHPRNPHTFKGRMRKAQEDLLMQADSTGRIRAAVLRLPDFYGPGVEASFLHGAIKAA 487 +REDHPR PHTFKGRMRKAQEDLLMQA + GRIRAAVLRLPDFYGPGVEAS LHGAIKAA Sbjct: 121 VREDHPRAPHTFKGRMRKAQEDLLMQAHTEGRIRAAVLRLPDFYGPGVEASLLHGAIKAA 180 Query: 488 AQGGTADMIGPLDRPHEFVFVPDVGPVVSRLISTPAAFGRIWHLAGAGVTSQKALVAEME 547 AQGGTADMIGPLDRPHEFVFVPDVGPVV++L+ TPAAFG+IWHLAGAGVT+QKALVAEME Sbjct: 181 AQGGTADMIGPLDRPHEFVFVPDVGPVVAKLVGTPAAFGKIWHLAGAGVTTQKALVAEME 240 Query: 548 RQTGRKLKTRVVGKTMLRLIGMFNPMMRELVEMHYLQTQPVIMDDSALQQLIGPITKTSY 607 RQTGRKLKTRVVGKTMLRLIGMFNP+MRELVEMHYLQTQPVIMDDSALQQLIGPI KTSY Sbjct: 241 RQTGRKLKTRVVGKTMLRLIGMFNPVMRELVEMHYLQTQPVIMDDSALQQLIGPIEKTSY 300 Query: 608 ADGIRRAL 615 ADGIR+AL Sbjct: 301 ADGIRKAL 308 >ref|YP_587793.1| NmrA/ Nucleoside-diphosphate-sugar epimerase (exported) [Cupriavidus metallidurans CH34] gb|ABF12524.1| NmrA-like protein/ Nucleoside-diphosphate-sugar epimerase (exported) [Cupriavidus metallidurans CH34] gb|EEE71702.1| predicted protein [Populus trichocarpa] Length = 324 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 236/310 (76%), Positives = 278/310 (89%) Query: 308 MSRIALFGAAGAIGQSIASAISAQGLPYRVVGRNEASLRKAFGADPLAEIVSWNPDSPAS 367 MS++ALFGAAGAIG+SIA+A+ ++G PYRVVGR+EASLR+AFG DPLAEI++WNPDSP + Sbjct: 1 MSKVALFGAAGAIGRSIAAALRSRGEPYRVVGRHEASLRQAFGDDPLAEILTWNPDSPEA 60 Query: 368 VEAAAQGIDTLIYLVGVNYTQFELHPELMRKTLDGAISAGVKQVLLIGTVYPYGLPQTSP 427 ++AAA G++TLIYLVGVNY QFELHP LMR+TLD A++AGVKQ++LIGTVYPYG +T+P Sbjct: 61 IQAAATGVETLIYLVGVNYWQFELHPALMRRTLDAAVAAGVKQIILIGTVYPYGRARTTP 120 Query: 428 LREDHPRNPHTFKGRMRKAQEDLLMQADSTGRIRAAVLRLPDFYGPGVEASFLHGAIKAA 487 + EDHPR PHTFKGRMRK+QEDLLMQA + GRIRA VLRLPDFYGPGVE S LH A+ AA Sbjct: 121 VSEDHPREPHTFKGRMRKSQEDLLMQAHADGRIRATVLRLPDFYGPGVENSLLHRAVLAA 180 Query: 488 AQGGTADMIGPLDRPHEFVFVPDVGPVVSRLISTPAAFGRIWHLAGAGVTSQKALVAEME 547 A GGTAD+IGP+D PHEF+FVPDVGPVV+RL+ TPAAFG+IWHLAGAGVT+Q+ LV EME Sbjct: 181 ANGGTADLIGPIDTPHEFIFVPDVGPVVARLVDTPAAFGKIWHLAGAGVTTQRELVEEME 240 Query: 548 RQTGRKLKTRVVGKTMLRLIGMFNPMMRELVEMHYLQTQPVIMDDSALQQLIGPITKTSY 607 RQTGR +K RVVGKTMLRL+G+FNP+MRELVEMHYLQT PVIMDDSAL+ LIGPI KTSY Sbjct: 241 RQTGRAMKLRVVGKTMLRLLGLFNPLMRELVEMHYLQTDPVIMDDSALRALIGPIRKTSY 300 Query: 608 ADGIRRALAS 617 DGIR+ L + Sbjct: 301 QDGIRQTLTA 310 >ref|YP_004680521.1| NAD-dependent epimerase/dehydratase [Cupriavidus necator N-1] gb|AEI79289.1| NAD-dependent epimerase/dehydratase [Cupriavidus necator N-1] Length = 323 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 238/311 (76%), Positives = 277/311 (89%), Gaps = 1/311 (0%) Query: 308 MSRIALFGAAGAIGQSIASAISAQGLPYRVVGRNEASLRKAFGADPLAEIVSWNPDSPAS 367 MS++ALFGAAGAIGQS+A+A+ ++G PYRVVGR+ SLR AFG DPLAE+V+WNPDSP S Sbjct: 1 MSKVALFGAAGAIGQSVAAALRSKGRPYRVVGRSAGSLRTAFGTDPLAEVVTWNPDSPES 60 Query: 368 VEAAAQGIDTLIYLVGVNYTQFELHPELMRKTLDGAISAGVKQVLLIGTVYPYGLPQT-S 426 V+AAA GI+TLIY+VGVNY QF+LHPELMRKTLDGA++AGVK +LIGTVYPYG QT + Sbjct: 61 VQAAASGIETLIYMVGVNYWQFQLHPELMRKTLDGAVAAGVKYFILIGTVYPYGRVQTGN 120 Query: 427 PLREDHPRNPHTFKGRMRKAQEDLLMQADSTGRIRAAVLRLPDFYGPGVEASFLHGAIKA 486 P+REDHPR PHTFKGRMRKAQEDLLMQAD++GRIRA VLRLPDFYGPGV+AS LH A +A Sbjct: 121 PVREDHPREPHTFKGRMRKAQEDLLMQADASGRIRATVLRLPDFYGPGVQASLLHRAAQA 180 Query: 487 AAQGGTADMIGPLDRPHEFVFVPDVGPVVSRLISTPAAFGRIWHLAGAGVTSQKALVAEM 546 A GGTADMIG LD+PHEFV+VPDVGPVV+RLI TPAAFG+IWHLAGAGVT+Q+ LV+EM Sbjct: 181 AVNGGTADMIGLLDQPHEFVYVPDVGPVVARLIDTPAAFGKIWHLAGAGVTTQRELVSEM 240 Query: 547 ERQTGRKLKTRVVGKTMLRLIGMFNPMMRELVEMHYLQTQPVIMDDSALQQLIGPITKTS 606 ERQTGR LK RV GKTMLRL+G+FNP MRELVEMHYL T P++MDDSALQ+L+GPI KT Sbjct: 241 ERQTGRTLKLRVAGKTMLRLLGLFNPFMRELVEMHYLMTDPLVMDDSALQRLVGPIRKTP 300 Query: 607 YADGIRRALAS 617 Y +GIR+ LA+ Sbjct: 301 YVEGIRQTLAA 311 >ref|YP_004227810.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1001] gb|ADX54750.1| NAD-dependent epimerase/dehydratase [Burkholderia sp. CCGE1001] Length = 321 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 230/308 (74%), Positives = 270/308 (87%) Query: 308 MSRIALFGAAGAIGQSIASAISAQGLPYRVVGRNEASLRKAFGADPLAEIVSWNPDSPAS 367 MS++ALFGAAG IGQSIA+A+ ++G PYRVVGR+E LRKAFGADPLAEIV+WNPDSPAS Sbjct: 1 MSKVALFGAAGVIGQSIAAALRSEGRPYRVVGRSEPGLRKAFGADPLAEIVTWNPDSPAS 60 Query: 368 VEAAAQGIDTLIYLVGVNYTQFELHPELMRKTLDGAISAGVKQVLLIGTVYPYGLPQTSP 427 V+AAA+ ++TLIY+VGVNY QFELHPELMRKT+DGA++AGVK ++LIGTVYPYG+ + +P Sbjct: 61 VQAAARDVETLIYMVGVNYWQFELHPELMRKTIDGAVAAGVKNIILIGTVYPYGMAKANP 120 Query: 428 LREDHPRNPHTFKGRMRKAQEDLLMQADSTGRIRAAVLRLPDFYGPGVEASFLHGAIKAA 487 +REDHPR PHTFKGRMRKAQEDLL+ A + GRI A VLRLPDFYGPGVEAS LH A AA Sbjct: 121 VREDHPREPHTFKGRMRKAQEDLLIAAHTDGRINATVLRLPDFYGPGVEASLLHRAALAA 180 Query: 488 AQGGTADMIGPLDRPHEFVFVPDVGPVVSRLISTPAAFGRIWHLAGAGVTSQKALVAEME 547 GG ADM+GP+D PHEFVFVPDVGPVV RL++TPAAFG+IW+LAGAGVT+Q+ LV+EME Sbjct: 181 VNGGAADMVGPIDCPHEFVFVPDVGPVVVRLLATPAAFGKIWNLAGAGVTTQRELVSEME 240 Query: 548 RQTGRKLKTRVVGKTMLRLIGMFNPMMRELVEMHYLQTQPVIMDDSALQQLIGPITKTSY 607 RQTG KLK RV KTMLRLIG+FNP MRE+VEM+YL T P+ MDDSALQ+LIGPI KT Y Sbjct: 241 RQTGTKLKLRVATKTMLRLIGLFNPFMREMVEMNYLMTDPLFMDDSALQELIGPIRKTPY 300 Query: 608 ADGIRRAL 615 +GIR+ L Sbjct: 301 VEGIRQTL 308 >ref|YP_004350454.1| NAD-dependent epimerase/dehydratase [Burkholderia gladioli BSR3] gb|AEA64942.1| NAD-dependent epimerase/dehydratase [Burkholderia gladioli BSR3] Length = 317 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 228/316 (72%), Positives = 272/316 (86%) Query: 308 MSRIALFGAAGAIGQSIASAISAQGLPYRVVGRNEASLRKAFGADPLAEIVSWNPDSPAS 367 MS+IALFGAAGAIGQSIA+A+ A PYRVVGRN A+L+ FG DPLAEI +W+PD+P S Sbjct: 1 MSKIALFGAAGAIGQSIAAALRASQRPYRVVGRNAAALQAGFGDDPLAEIATWDPDAPGS 60 Query: 368 VEAAAQGIDTLIYLVGVNYTQFELHPELMRKTLDGAISAGVKQVLLIGTVYPYGLPQTSP 427 +E AA GIDTL+YLVGVNY QFELHP LMRKT+DGA++AGVK+++LIGTVYPYG + +P Sbjct: 61 IEVAAAGIDTLVYLVGVNYWQFELHPALMRKTIDGAVAAGVKRIVLIGTVYPYGRARANP 120 Query: 428 LREDHPRNPHTFKGRMRKAQEDLLMQADSTGRIRAAVLRLPDFYGPGVEASFLHGAIKAA 487 +REDHPR PHTFKGRMRKAQEDLLM+A + GRI A VLRLPDFYGPGV AS LHGAI+AA Sbjct: 121 VREDHPREPHTFKGRMRKAQEDLLMEAHAEGRIEATVLRLPDFYGPGVTASMLHGAIRAA 180 Query: 488 AQGGTADMIGPLDRPHEFVFVPDVGPVVSRLISTPAAFGRIWHLAGAGVTSQKALVAEME 547 +GGTA+++GPLDR HEFVFVPDVGPVV RL+ TPAA+GRIWHLAGAG TSQ+ L+ E+E Sbjct: 181 VEGGTAELLGPLDRDHEFVFVPDVGPVVERLLDTPAAYGRIWHLAGAGTTSQRVLLDEIE 240 Query: 548 RQTGRKLKTRVVGKTMLRLIGMFNPMMRELVEMHYLQTQPVIMDDSALQQLIGPITKTSY 607 RQ GRKLK RV KTMLR++G+F+PMMRELVEM+YL T+P+I+DD+ALQ+LIGPI KT Y Sbjct: 241 RQAGRKLKLRVANKTMLRVLGLFSPMMRELVEMNYLMTEPLILDDTALQKLIGPIRKTPY 300 Query: 608 ADGIRRALASQGGTSA 623 A+GIR +L +Q A Sbjct: 301 AEGIRLSLVAQAARVA 316