BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4154.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776877.1| transcription regulator protein [Herbaspiril... 476 e-132 ref|YP_004227811.1| LysR family transcriptional regulator [Burkh... 427 e-117 ref|YP_587794.1| LysR family transcriptional regulator [Cupriavi... 403 e-110 ref|YP_260734.1| LysR family transcriptional regulator [Pseudomo... 390 e-106 ref|YP_004680522.1| LysR family transcriptional regulator [Cupri... 387 e-106 >ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64969.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 254/296 (85%), Positives = 271/296 (91%) Query: 4 LADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIEQLESALGLKLFVRSFDGF 63 +ADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIE LES LGLKLFVRSFDGF Sbjct: 1 MADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGF 60 Query: 64 SPTDAALELRPYAAGIAATSAALRRVASSHGREVRGTVRLTASEVISVEVLPPILAELKH 123 SPTDAALEL+PYAA IAA SAALRR ASS G+EVRGTVRLTASEVISVEVLPPILA L+H Sbjct: 61 SPTDAALELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRH 120 Query: 124 RHPGLCIELVMSNRADDLLQREADIAVRMFKPVQDALIAKRLGSIEVGLHAHQRYLAAHG 183 RHP L +ELV+SN+ADDLLQREADIAVRMF+P QDAL+AKRLGSIE+GLHAHQ YL HG Sbjct: 121 RHPELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLTVHG 180 Query: 184 VPHSIDALAGHALIGFDQESAFVRKVLEQFPWLARAGLAFRADSDLAQLAAIRAGFGIGI 243 P S+DALA H LIGFDQESA+VR VL+Q PWL+RA LA R DSDLAQLAAIRAGFGIGI Sbjct: 181 APKSVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGI 240 Query: 244 CQVGLAARDDALVHLLPRKFSLKMETWIAMHEDLRASPRCAVTFAALVAGLGAYIR 299 CQV LAARD ALV LLPR+F+LKMETW+AMHEDLRASPRCAVTFAALVAGLGAYIR Sbjct: 241 CQVALAARDVALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLGAYIR 296 >ref|YP_004227811.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX54751.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 296 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 227/292 (77%), Positives = 254/292 (86%) Query: 8 EPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIEQLESALGLKLFVRSFDGFSPTD 67 EPNWEWYR+FL VLETGSLSAAGR MGLTQPTVGRHI+ LESALGLKLF RSFDGF+PTD Sbjct: 5 EPNWEWYRTFLTVLETGSLSAAGRTMGLTQPTVGRHIDSLESALGLKLFTRSFDGFAPTD 64 Query: 68 AALELRPYAAGIAATSAALRRVASSHGREVRGTVRLTASEVISVEVLPPILAELKHRHPG 127 AALEL+PYAA +AATSAAL RVASSHG VRGTVRL+ASEVI +EVLPPILA L+ HP Sbjct: 65 AALELKPYAASVAATSAALLRVASSHGSGVRGTVRLSASEVIGIEVLPPILATLRSEHPE 124 Query: 128 LCIELVMSNRADDLLQREADIAVRMFKPVQDALIAKRLGSIEVGLHAHQRYLAAHGVPHS 187 L IELV+SN+ DDLL READIAVRM +P QDAL+AKR+G IE+GLHAH+RYLAAHG P S Sbjct: 125 LIIELVLSNKVDDLLHREADIAVRMLRPTQDALVAKRVGGIELGLHAHERYLAAHGTPKS 184 Query: 188 IDALAGHALIGFDQESAFVRKVLEQFPWLARAGLAFRADSDLAQLAAIRAGFGIGICQVG 247 +D LAGHALIGFD E+A++R++L+QFP +RA LAFRADSDLAQL AIRAGFGIG+CQ Sbjct: 185 MDELAGHALIGFDHENAYIRRLLDQFPMFSRAALAFRADSDLAQLGAIRAGFGIGVCQSA 244 Query: 248 LAARDDALVHLLPRKFSLKMETWIAMHEDLRASPRCAVTFAALVAGLGAYIR 299 LAARD+ALV +L FSLKM+TWIAMHEDLR S RCAVTFAAL AGL YIR Sbjct: 245 LAARDEALVRVLRGAFSLKMDTWIAMHEDLRESARCAVTFAALAAGLERYIR 296 >ref|YP_587794.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12525.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 306 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 212/300 (70%), Positives = 250/300 (83%) Query: 1 MNTLADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIEQLESALGLKLFVRSF 60 M+T+ EP+WEWYR+FL+VLE GSLSAAGR +G+TQPTVGRHI+ LESALGLKLF RSF Sbjct: 1 MHTMTRNEPSWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSF 60 Query: 61 DGFSPTDAALELRPYAAGIAATSAALRRVASSHGREVRGTVRLTASEVISVEVLPPILAE 120 DGF+PT+AA EL+PYAA IAAT+AALRRVASSHG VRGTVRLTASEVI EVLPPILA Sbjct: 61 DGFAPTEAAHELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAA 120 Query: 121 LKHRHPGLCIELVMSNRADDLLQREADIAVRMFKPVQDALIAKRLGSIEVGLHAHQRYLA 180 L+ HP L +ELV+SN+ DDLL+READIA+RMF+PVQ ALIA+ +G IE+GLHAH RYL Sbjct: 121 LRDAHPELVVELVLSNQPDDLLRREADIAIRMFRPVQGALIARHVGGIEIGLHAHSRYLQ 180 Query: 181 AHGVPHSIDALAGHALIGFDQESAFVRKVLEQFPWLARAGLAFRADSDLAQLAAIRAGFG 240 AHGVP S L+ HALIGFDQE+ F+R++ +F R LAFR+DSDLAQL AIRAGFG Sbjct: 181 AHGVPGSTSELSRHALIGFDQENDFIRRLQSKFKPFWRDSLAFRSDSDLAQLGAIRAGFG 240 Query: 241 IGICQVGLAARDDALVHLLPRKFSLKMETWIAMHEDLRASPRCAVTFAALVAGLGAYIRG 300 IG+CQ LAARD LV +LP +FS+ ++TW+AMHEDLR + RCAVTFAALV GL AYI+G Sbjct: 241 IGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTRCAVTFAALVNGLDAYIKG 300 >ref|YP_260734.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY92898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 301 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 200/300 (66%), Positives = 247/300 (82%) Query: 1 MNTLADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIEQLESALGLKLFVRSF 60 M++ D P+W+WYR+FL VL++GSLSAAGR MGLTQPTVGRHI+QLE+ALGLKLF RSF Sbjct: 1 MHSPTDTPPHWDWYRTFLAVLDSGSLSAAGRAMGLTQPTVGRHIDQLEAALGLKLFTRSF 60 Query: 61 DGFSPTDAALELRPYAAGIAATSAALRRVASSHGREVRGTVRLTASEVISVEVLPPILAE 120 DGF+ T+AALEL+PY +AA AALRRVASSHG V+G+VR++ASE+I VEVLPPILA Sbjct: 61 DGFAATEAALELKPYLLQLAAGEAALRRVASSHGAGVQGSVRISASEIIGVEVLPPILAT 120 Query: 121 LKHRHPGLCIELVMSNRADDLLQREADIAVRMFKPVQDALIAKRLGSIEVGLHAHQRYLA 180 L+ +HP L +ELV+SNRADDLLQR+ADIAVRMF+P Q+AL+ +R+ IE+GLHAH+ YL Sbjct: 121 LRQQHPQLVVELVLSNRADDLLQRQADIAVRMFRPTQEALLVRRVADIELGLHAHRDYLQ 180 Query: 181 AHGVPHSIDALAGHALIGFDQESAFVRKVLEQFPWLARAGLAFRADSDLAQLAAIRAGFG 240 G P S++ LAGHALIGFD+E+AF+R++ +Q+P LAR A+R+DSDLAQLAA+RAGFG Sbjct: 181 QQGTPLSLEQLAGHALIGFDRETAFIRRLQQQYPMLARGAFAWRSDSDLAQLAALRAGFG 240 Query: 241 IGICQVGLAARDDALVHLLPRKFSLKMETWIAMHEDLRASPRCAVTFAALVAGLGAYIRG 300 IG CQV LA D LV +L +F+ +E W+AMHEDLR SPRCAVTFAALV GL AY G Sbjct: 241 IGACQVRLAEADPRLVRVLAEQFAPSLEAWVAMHEDLRNSPRCAVTFAALVQGLAAYAGG 300 >ref|YP_004680522.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79290.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 298 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 213/293 (72%), Positives = 247/293 (84%) Query: 8 EPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIEQLESALGLKLFVRSFDGFSPTD 67 EP+WEWYR+FL VLETGSLSAAGR MGLTQPTVGRHI+ LE+ALGLKLF RSFDGF+PTD Sbjct: 5 EPDWEWYRAFLHVLETGSLSAAGRAMGLTQPTVGRHIDSLEAALGLKLFTRSFDGFAPTD 64 Query: 68 AALELRPYAAGIAATSAALRRVASSHGREVRGTVRLTASEVISVEVLPPILAELKHRHPG 127 AA EL+PYAAGIAAT+AA+RRVAS HG VRGTVRL+ASEVI VEVLPPILA L + HP Sbjct: 65 AAHELKPYAAGIAATAAAMRRVASGHGAGVRGTVRLSASEVIGVEVLPPILAALHNEHPE 124 Query: 128 LCIELVMSNRADDLLQREADIAVRMFKPVQDALIAKRLGSIEVGLHAHQRYLAAHGVPHS 187 L IELV+SN+ADDLL+R+ADIAVRMF+P Q AL+A R+G IE+GLHAH+ YLA+HGVP S Sbjct: 125 LEIELVLSNQADDLLRRDADIAVRMFRPEQAALVATRVGGIELGLHAHESYLASHGVPKS 184 Query: 188 IDALAGHALIGFDQESAFVRKVLEQFPWLARAGLAFRADSDLAQLAAIRAGFGIGICQVG 247 + L+ A IGFDQE+AF+R++ +F +R LAFRADSDLAQL AIRAGFGIG+CQ Sbjct: 185 LADLSRFAAIGFDQENAFIRRLQARFKAFSRDALAFRADSDLAQLGAIRAGFGIGVCQSA 244 Query: 248 LAARDDALVHLLPRKFSLKMETWIAMHEDLRASPRCAVTFAALVAGLGAYIRG 300 LAARD LV +LP +FS+ M+TW+AMHEDLR S RCAVTFAAL AGL AY G Sbjct: 245 LAARDPRLVRVLPSQFSMTMDTWVAMHEDLRESARCAVTFAALAAGLRAYAEG 297