BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4153.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_737183.1| hypothetical protein Shewmr7_1127 [Shewanella s...   114   6e-24
ref|YP_459004.1| hypothetical protein ELI_10575 [Erythrobacter l...    94   5e-18
ref|ZP_06974261.1| conserved hypothetical protein [Ktedonobacter...    83   2e-14
ref|YP_004233516.1| hypothetical protein Acav_1027 [Acidovorax a...    81   4e-14
ref|YP_003993755.1| hypothetical protein pPHDD1_p073 [Photobacte...    76   2e-12

>ref|YP_737183.1| hypothetical protein Shewmr7_1127 [Shewanella sp. MR-7]
 gb|ABI42126.1| conserved hypothetical protein [Shewanella sp. MR-7]
          Length = 117

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 69/105 (65%)

Query: 10  LSFGTLRNVDVPVELHVVDEPPEIQSDQFDHVVEGAFASPTGKIVVLGCTEYFPDASRLE 69
           L+ GT RNVDVP ++ + +  PEI   ++DH  +G F S +G+  V GCT+Y PDA+++E
Sbjct: 8   LAIGTFRNVDVPFDVEIRENEPEINLKEWDHASKGHFTSKSGRCAVFGCTDYLPDAAKIE 67

Query: 70  IAPGSYGFMYLISGVHTIKNEWEPADDLYSVYIWPAAKRELRPVK 114
           I PG Y  + L  G+ +I  EWE ADDLY V +WP++  E R +K
Sbjct: 68  INPGKYAVLSLAKGLGSITEEWEDADDLYKVILWPSSAEEYRALK 112


>ref|YP_459004.1| hypothetical protein ELI_10575 [Erythrobacter litoralis HTCC2594]
 gb|ABC64207.1| hypothetical protein ELI_10575 [Erythrobacter litoralis HTCC2594]
          Length = 168

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 71/113 (62%)

Query: 2   MVAAGETALSFGTLRNVDVPVELHVVDEPPEIQSDQFDHVVEGAFASPTGKIVVLGCTEY 61
           M+A  E  ++ GT RN+ VPV L ++   P    + ++ V+E +F  P+G+IV LGCT+Y
Sbjct: 46  MLAIAENLIAIGTARNMTVPVSLELLSGRPRPDFEVWEQVIEASFNVPSGEIVALGCTDY 105

Query: 62  FPDASRLEIAPGSYGFMYLISGVHTIKNEWEPADDLYSVYIWPAAKRELRPVK 114
            PDA RL+++PGSY  +    G+ ++ ++    +D Y V +WP AK ++R +K
Sbjct: 106 LPDAKRLQVSPGSYRALVSYRGLDSLSDDGLDGEDEYRVQLWPDAKCDVRAMK 158


>ref|ZP_06974261.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
 gb|EFH82328.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
          Length = 165

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 65/120 (54%)

Query: 2   MVAAGETALSFGTLRNVDVPVELHVVDEPPEIQSDQFDHVVEGAFASPTGKIVVLGCTEY 61
           M+A     +   T+RN+DVP+ + ++D  P      +DHV E +  +P+G+IV+ GC +Y
Sbjct: 46  MIAVEPGIVGVATVRNMDVPLRVDLLDGRPNDDFSAWDHVAEASLDAPSGQIVIAGCMDY 105

Query: 62  FPDASRLEIAPGSYGFMYLISGVHTIKNEWEPADDLYSVYIWPAAKRELRPVKLWMPIRA 121
           FPDA RL ++PG Y       G+ T+  +    +D Y V +WP    +    K W  +RA
Sbjct: 106 FPDAKRLPVSPGCYRVRIYYGGLDTLSPDGLEGEDHYQVAVWPEKHADPTIPKKWPSLRA 165


>ref|YP_004233516.1| hypothetical protein Acav_1027 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX44949.1| hypothetical protein Acav_1027 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 154

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 63/116 (54%)

Query: 2   MVAAGETALSFGTLRNVDVPVELHVVDEPPEIQSDQFDHVVEGAFASPTGKIVVLGCTEY 61
           M+A     +  GT+RN+ VPV L + D  P    ++FDHVVE + A  +G +VV GCT+Y
Sbjct: 38  MLAVAPGIVGCGTVRNMQVPVTLELWDAEPPADVERFDHVVEASLALASGTLVVAGCTDY 97

Query: 62  FPDASRLEIAPGSYGFMYLISGVHTIKNEWEPADDLYSVYIWPAAKRELRPVKLWM 117
            PDA+R  + PG Y      +G+  +  +    +D Y V +WP  +     VK ++
Sbjct: 98  LPDAARFALVPGVYRVRLSAAGLGLLSEDGLEGEDWYRVQVWPGVEAAPVVVKQYL 153


>ref|YP_003993755.1| hypothetical protein pPHDD1_p073 [Photobacterium damselae subsp.
           damselae]
 emb|CBX86842.1| hypothetical protein [Photobacterium damselae subsp. damselae]
          Length = 159

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 9/112 (8%)

Query: 1   MMVAAGETALSFGTLRNVDVPVELHVVDEPPEIQSDQFDHVV-------EGAFASPTGKI 53
           ++V  G  ALS  T RN+DVPVE+ V DE P+I    ++H+V        G +   +G +
Sbjct: 34  IIVDNGYIALS--TARNMDVPVEIVVSDEKPDIDKKSWEHIVYCSITLASGFWLLASGFL 91

Query: 54  VVLGCTEYFPDASRLEIAPGSYGFMYLISGVHTIKNEWEPADDLYSVYIWPA 105
           VV G ++Y PDA+R+++ PG+Y    L  G+ T+  +    DD Y++ +WP+
Sbjct: 92  VVRGPSDYLPDATRVKLKPGNYAAYVLYKGLTTLSEDGLEGDDYYNIILWPS 143