BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4150.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_449077.1| hypothetical protein XOO_0048 [Xanthomonas oryz...    83   1e-14
ref|YP_121804.1| hypothetical protein nfa55880 [Nocardia farcini...    73   1e-11
ref|YP_001703846.1| hypothetical protein MAB_3115 [Mycobacterium...    62   3e-08

>ref|YP_449077.1| hypothetical protein XOO_0048 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 dbj|BAE66803.1| hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 131

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 60/90 (66%)

Query: 10  MRYFSPGDEAAFFTWLQSIPGVVSVKGYGKELHIRLRSKRISASSLQELLALYLRYQGEL 69
           +R+FS GDE AFF W++S P V  ++G+G+ L +++ S  I    L+ELLAL+ RY  ++
Sbjct: 36  VRFFSRGDETAFFGWIKSFPFVEQIEGHGRTLFMKVNSSAIDEDGLRELLALFRRYGVDM 95

Query: 70  SELAQFANQSNSSWFADANAPWHSQVFGST 99
           ++L  F  +  + WF  A+A WH+ +FGS+
Sbjct: 96  AQLVAFDREEFAEWFRRADAYWHNDIFGSS 125


>ref|YP_121804.1| hypothetical protein nfa55880 [Nocardia farcinica IFM 10152]
 dbj|BAD60440.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 103

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 2   ATLIWQAPMRYFSPGDEAAFFTWLQSIPGVVSVKGYGKELHIRLRSKRISASSLQELLAL 61
           AT +W     Y+S GDEAAFF WL  IP V S  G    L I + +  +   SL+ELLAL
Sbjct: 11  ATDVW-----YYSRGDEAAFFAWLDRIPAVRSYGGRLSTLEIVVETP-VDDDSLRELLAL 64

Query: 62  YLRYQGELSELAQFANQSNSSWFADANAPWHSQVFGST 99
           + RY  +L++L Q  N    +WF D    WH  +FG++
Sbjct: 65  FHRYHIDLTQLRQLDNSRIGAWFRDPQKYWHEAIFGTS 102


>ref|YP_001703846.1| hypothetical protein MAB_3115 [Mycobacterium abscessus ATCC 19977]
 emb|CAM63192.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 241

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 46/88 (52%)

Query: 10  MRYFSPGDEAAFFTWLQSIPGVVSVKGYGKELHIRLRSKRISASSLQELLALYLRYQGEL 69
           +RY+S  DEAAFF WL   P V S +G    L+I +         L EL ALY RY  ++
Sbjct: 154 VRYYSELDEAAFFEWLDKNPQVESYRGRNHTLYINVNVDSGEEWELCELAALYTRYNIDM 213

Query: 70  SELAQFANQSNSSWFADANAPWHSQVFG 97
           +EL    + +   WF+D    WH  VFG
Sbjct: 214 TELRVLNSGNFGPWFSDPKWWWHKAVFG 241



 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 41/85 (48%)

Query: 12  YFSPGDEAAFFTWLQSIPGVVSVKGYGKELHIRLRSKRISASSLQELLALYLRYQGELSE 71
           Y S  DEA FF WL  +PG  S  G  + L + +    +   +L E + LY RY    +E
Sbjct: 16  YQSDFDEAVFFQWLDKMPGAWSHGGARQTLQVAVDPDALDEDALSEFVGLYRRYHVSAAE 75

Query: 72  LAQFANQSNSSWFADANAPWHSQVF 96
           L   A     SWF+  +  WH ++F
Sbjct: 76  LQVLAGTRLGSWFSSPDRFWHREIF 100