BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4149.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776882.1| hypothetical protein Hsero_3495 [Herbaspiril...   189   2e-46
ref|YP_548419.1| hypothetical protein Bpro_1582 [Polaromonas sp....   102   2e-20

>ref|YP_003776882.1| hypothetical protein Hsero_3495 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64974.1| hypothetical protein Hsero_3495 [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/142 (66%), Positives = 119/142 (83%)

Query: 7   ILDFIDGSEQLVVELGEWPSFHDDEVVAVLLQREADIGAEGGSSLRLSIHVRRHEQIGLG 66
           I +FIDGSE+LV ELGEWPSFHDDEVVAVLL REA +  E  +S+RLSIHVRR+EQIG+G
Sbjct: 3   ITEFIDGSEKLVSELGEWPSFHDDEVVAVLLDREAGLDPEEKASMRLSIHVRRYEQIGIG 62

Query: 67  TAQYHLRLHKNLLVHLVFKELQDLVMSDFNGQNVIHSLDIAVDAMSDTLEASVSIESSWG 126
           T+QYHL ++KN+LVHLVF  + DL +S+F  QNVI SL+I+VDA  +T  ASVSIESSWG
Sbjct: 63  TSQYHLSMNKNMLVHLVFLGIHDLAISNFGVQNVISSLEISVDASGNTRVASVSIESSWG 122

Query: 127 LKGTFRCKSVQVESLEKLPVPD 148
           ++GTF+CKS+ VE++E LP+ +
Sbjct: 123 MEGTFKCKSIWVEAIEMLPLAE 144


>ref|YP_548419.1| hypothetical protein Bpro_1582 [Polaromonas sp. JS666]
 gb|ABE43521.1| hypothetical protein Bpro_1582 [Polaromonas sp. JS666]
          Length = 167

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 1/137 (0%)

Query: 8   LDFIDGSEQLVVELGEWPSFHDDEVVAVLLQREADIGAEGGSSLRLSIHVRRHEQIGLGT 67
           ++ I G+ ++V  LG WP+FHD EV++   +R   +   G S  R+++HVR +  +G GT
Sbjct: 27  IEHIIGTSKVVETLGYWPTFHDAEVISFAAERALPVKC-GYSIFRMTVHVRNYTTVGEGT 85

Query: 68  AQYHLRLHKNLLVHLVFKELQDLVMSDFNGQNVIHSLDIAVDAMSDTLEASVSIESSWGL 127
           AQY   L  ++L+H +F    D   S FN QNVI ++ +      ++    V+IES WG 
Sbjct: 86  AQYAQVLSASVLIHFLFTGACDFEFSGFNHQNVIDAIVVTPVTTDESANLRVAIESIWGF 145

Query: 128 KGTFRCKSVQVESLEKL 144
            G  RC  V+VE++E L
Sbjct: 146 GGILRCSRVEVEAVEVL 162