BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4146.p         (285 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBJ41108.1| hypothethical protein [Ralstonia solanacearum CM...   475   e-132
ref|ZP_02881533.1| conserved hypothetical protein [Burkholderia ...   256   3e-66
ref|YP_563918.1| hypothetical protein Sden_2917 [Shewanella deni...   178   8e-43

>emb|CBJ41108.1| hypothethical protein [Ralstonia solanacearum CMR15]
          Length = 285

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/284 (79%), Positives = 253/284 (89%)

Query: 1   MSYDLFFTFPQPTQRSAVEEYFRRRPHYQLNGSAVYQSQDTGVYFLFEFQESDDDPNQLV 60
           MSYDLFFTFPQP QRSAVEEYF  RPHYQLNGSAVY+S+DTGVYFLFEFQ S+DDPNQLV
Sbjct: 1   MSYDLFFTFPQPAQRSAVEEYFGPRPHYQLNGSAVYESRDTGVYFLFEFQASEDDPNQLV 60

Query: 61  GASLNLNYFRPHIFGLEAEPEVRAFVEHFQPDVEDPQTHGMDRGPYTREGFLAGWNAGNE 120
           GASLN+NYFRPHIFGLEAEPEVRAFVEHFQ  VEDPQ HGM +GPYT EGFL+GWNAGN 
Sbjct: 61  GASLNVNYFRPHIFGLEAEPEVRAFVEHFQLGVEDPQMHGMGQGPYTAEGFLSGWNAGNA 120

Query: 121 FGYKAITSQHKGPFLACPEAKIEAAWRWNRAKSALQEEFGEVLFVPTIMFATIDGHLRSA 180
           F Y+AIT+Q+KGPFL+CPEAK+EAAWRWN+ KSA+Q++  E +FVPTIMFA I G L+S 
Sbjct: 121 FAYEAITAQNKGPFLSCPEAKLEAAWRWNQTKSAVQQKLEERMFVPTIMFANIGGELQSV 180

Query: 181 VVWGDGIPTLMPQTDAVIVVRDELAPKPLFRPRTKDTCVVAPDKLADLLGPFVEKGYALP 240
           VVWGDGIPTLMP TDA+IVVRDELAPKPLFRPRTKDTCV+A   LADL GPF E+GYA+P
Sbjct: 181 VVWGDGIPTLMPPTDAIIVVRDELAPKPLFRPRTKDTCVIASSDLADLFGPFAEQGYAMP 240

Query: 241 VRVPAYERPTRDIGKFFRGLRAFTGQLKIVSVGDVLSEELLGKC 284
           VRVP Y++PTRD+ KFF  LRAFTGQL+IVSV +VLS+ELL KC
Sbjct: 241 VRVPTYDKPTRDVTKFFGSLRAFTGQLQIVSVDNVLSQELLSKC 284


>ref|ZP_02881533.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT12962.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 287

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 131/285 (45%), Positives = 168/285 (58%), Gaps = 5/285 (1%)

Query: 1   MSYDLFFTFPQPTQRSAVEEYFRRRPHYQLNGSAVYQSQDTGVYFLFEFQESDDDPNQLV 60
           MSYDL+F   QPT  + +E +FR RPHYQ+N +AVYQ+ +TGVYF F +   D   +++ 
Sbjct: 1   MSYDLYFDLSQPTLCADIERHFRERPHYQVNDAAVYQNANTGVYFQFNWPR-DSAVDRVS 59

Query: 61  GASLNLNYFRPHIFGLEAEPEVRAFVEHFQPDVEDPQTHGMDRGPYTREGFLAGWNAGNE 120
             + N+NYFRPH+FGLEAEPEVRAFV  F P VEDPQ  GM    Y RE FL+GWN GNE
Sbjct: 60  RVAFNMNYFRPHVFGLEAEPEVRAFVARFSPKVEDPQMGGMVS--YARERFLSGWNTGNE 117

Query: 121 FGYKAI--TSQHKGPFLACPEAKIEAAWRWNRAKSALQEEFGEVLFVPTIMFATIDGHLR 178
             Y  I    Q        P A +E  WRWN      Q +FG+ LFVP IM   ++G L 
Sbjct: 118 AAYGGILQMQQPTRKLYTLPSADLERIWRWNLLIEQTQAKFGQSLFVPRIMLLAVNGELT 177

Query: 179 SAVVWGDGIPTLMPQTDAVIVVRDELAPKPLFRPRTKDTCVVAPDKLADLLGPFVEKGYA 238
           +AV W DGIP L+P+  AV VVRDEL+   +     KD C++    L  +L P V+ GY 
Sbjct: 178 TAVAWADGIPELIPEVQAVFVVRDELSSDSVAHNSAKDRCLIRQSALDAVLAPLVDSGYP 237

Query: 239 LPVRVPAYERPTRDIGKFFRGLRAFTGQLKIVSVGDVLSEELLGK 283
           L VR P+Y +P   +  F + L A +  +  +S   VL  EL  K
Sbjct: 238 LRVRSPSYNKPPAAVRTFIKSLAATSDHITGISFDSVLDRELASK 282


>ref|YP_563918.1| hypothetical protein Sden_2917 [Shewanella denitrificans OS217]
 gb|ABE56195.1| hypothetical protein Sden_2917 [Shewanella denitrificans OS217]
          Length = 286

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 109/290 (37%), Positives = 158/290 (54%), Gaps = 14/290 (4%)

Query: 1   MSYDLFFTFPQPTQ--RSAVEEYFRRRPHYQLNGS-AVYQSQDTGVYFLFEFQESDDDPN 57
           MSYDLF   P+  +  +   + YF  R HY L GS A YQ++ TGVYF+FE+Q+ +D   
Sbjct: 1   MSYDLFLK-PKSGEFSKKQFDAYFTSREHYTLEGSQAWYQNEATGVYFVFEYQDKEDAEE 59

Query: 58  QLVGASLNLNYFRPHIFGLEAEPEVRAFVEHFQPDVEDPQTHGMDRGPYTREGFLAGWNA 117
                  N+NYFRP  F  EAEPEV      F  +V+DPQ HGM  G +  + F +GW  
Sbjct: 60  GYYPIVFNMNYFRPTYFIKEAEPEVIELKSKFNLEVDDPQKHGMGSGDFDEDKFKSGWLH 119

Query: 118 GNEFGYKAITSQHKGPFLACPEAKIEAAWRWNRAKSALQEEFGEVLFVPTIMFATIDGHL 177
           GNEF Y++I   +   F + P  K+E  W WN  K +LQE+  + +FVP+IM    +G +
Sbjct: 120 GNEFAYQSILKDNSDVF-SLPTKKLENVWSWNNNKESLQEQTEDDVFVPSIMLLNYEGRV 178

Query: 178 RSAVVWGDGIPTLMPQTDAVIVVRDELAPKPLFRPRTKDTCVVAPDKLADLLGPFVEKGY 237
            +A VW D I +++P  D +++ R ELAP+ LF+ + +D  +    +L     P  EK  
Sbjct: 179 VTACVWPDAISSIIPPVDILLIGRKELAPRKLFK-KVEDMVLGDWGQLM----PIFEKHK 233

Query: 238 AL---PVRVPAYERPTRDIGKFFRGLRAF-TGQLKIVSVGDVLSEELLGK 283
           A          Y     +I K  + L++F    L+ +SV  VL+EEL+ K
Sbjct: 234 AKMQGDAYYLHYHSVPNEIKKHIQNLKSFDISSLERLSVDQVLNEELVQK 283