BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4144.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02377016.1| hypothetical protein BuboB_04796 [Burkholderi...    71   4e-11
ref|YP_003979799.1| hypothetical protein AXYL_03764 [Achromobact...    60   1e-07

>ref|ZP_02377016.1| hypothetical protein BuboB_04796 [Burkholderia ubonensis Bu]
          Length = 220

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 2   YAQILRENPAFYAKAKARMISYWDCYYRRTFKYKNDYVGFRLFSHWDRLVEES 54
           Y   +RENP FY KA+ RM+SYWDCYYR  +K K DYVGFRLF  +D     S
Sbjct: 149 YGAFIRENPVFYRKARDRMVSYWDCYYRWLYKRKRDYVGFRLFDQFDEWSRSS 201


>ref|YP_003979799.1| hypothetical protein AXYL_03764 [Achromobacter xylosoxidans A8]
 gb|ADP17084.1| hypothetical protein AXYL_03764 [Achromobacter xylosoxidans A8]
          Length = 191

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 30/47 (63%)

Query: 1   MYAQILRENPAFYAKAKARMISYWDCYYRRTFKYKNDYVGFRLFSHW 47
           +Y  +LR NPAF   A+ RM SYWDCYYRR       YVGFRLF  +
Sbjct: 138 VYGPVLRSNPAFLDLAQQRMTSYWDCYYRRRGVRSETYVGFRLFKQF 184