BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4142.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001021791.1| hypothetical protein Mpe_A2602 [Methylibium ...    91   7e-17
ref|ZP_05887273.1| hypothetical protein VIC_003782 [Vibrio coral...    75   3e-12

>ref|YP_001021791.1| hypothetical protein Mpe_A2602 [Methylibium petroleiphilum PM1]
 gb|ABM95556.1| hypothetical protein Mpe_A2602 [Methylibium petroleiphilum PM1]
          Length = 145

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/93 (48%), Positives = 62/93 (66%)

Query: 3   YSKKIVLLSRSGYVPERDEDFLRQLCSDGVRLFCVLGADVDKWEEALDWIGLDQGSAEPH 62
           +S KIVL+S SGY  +R    L++L    + LFCV+G D +KWE+ALDW+ +    +   
Sbjct: 51  HSGKIVLVSSSGYSQDRGYPLLQKLIESQIELFCVVGVDAEKWEDALDWLCVGADGSGTQ 110

Query: 63  FITTTSHIDESLAEVIEFARLFDTGEKADVQVL 95
           FITTTSH  ES AEVIEFA+ F T +  +V+V+
Sbjct: 111 FITTTSHPGESEAEVIEFAKSFSTKQPHEVEVV 143


>ref|ZP_05887273.1| hypothetical protein VIC_003782 [Vibrio coralliilyticus ATCC
          BAA-450]
 gb|EEX30840.1| hypothetical protein VIC_003782 [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 94

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 5  KKIVLLSRSGYVPERDEDFLRQLCSDGVRLFCVLGADVDKWEEALDWIGLDQGSAEPHFI 64
          KK+VL+++S Y P+ DE FL ++ +DG RL C+ G D + WE+ +D + +  GS +   +
Sbjct: 4  KKVVLVAKSNYSPDSDE-FLLKILTDGARLICITGVDCNTWEDVIDELAVGDGS-QVFDV 61

Query: 65 TTTSHIDESLAEVIEFARLFDTGEKADVQVL 95
          TTTSH +ES  EVIEFAR F   E + V+++
Sbjct: 62 TTTSHPNESELEVIEFARSFPLVENSVVKIV 92