BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4140.p         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ37229.1| conserved hypothetical protein [Ralstonia solana...    55   3e-06
ref|ZP_01764974.1| hypothetical protein BURPS305_6368 [Burkholde...    55   4e-06
emb|CCA88473.1| conserved hypothetical protein [Ralstonia syzygi...    55   4e-06

>emb|CAQ37229.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 87

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 51/79 (64%)

Query: 1  MLDKAIVRSIIDMFIFLEFSEDSQIDEDVAVSQMEALAAQLQGAPEATRKDLVEMITELA 60
          M+DK + ++++D+ +FLEFS+   +DED AV+ +E +A++L+    + ++ L     +LA
Sbjct: 8  MVDKHLAKAVVDVVVFLEFSDSGVVDEDSAVAMLEQIASELRCMEISEKESLALHFKDLA 67

Query: 61 PHYGEHSDFVRALPRTIGL 79
            YG+  +FV  L  T+GL
Sbjct: 68 DRYGDKREFVEGLFDTLGL 86


>ref|ZP_01764974.1| hypothetical protein BURPS305_6368 [Burkholderia pseudomallei
          305]
 gb|EBA50124.1| hypothetical protein BURPS305_6368 [Burkholderia pseudomallei
          305]
          Length = 85

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%)

Query: 8  RSIIDMFIFLEFSEDSQIDEDVAVSQMEALAAQLQGAPEATRKDLVEMITELAPHYGEHS 67
          + I+D+ IFLE+S ++ ID D ++  +E +A +LQ   ++ R  L + I +LAP YG  +
Sbjct: 12 KVIVDVSIFLEYSGENIIDPDASIELLEQIANELQKMSDSERASLSKSIRDLAPQYGPRA 71

Query: 68 DFVRALPRTIGL 79
          +FV  LP  +G+
Sbjct: 72 NFVTDLPSNLGI 83


>emb|CCA88473.1| conserved hypothetical protein [Ralstonia syzygii R24]
          Length = 80

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 1  MLDKAIVRSIIDMFIFLEFSEDSQIDEDVAVSQMEALAAQLQGAPEATRKDLVEMITELA 60
          M+DK I + I+D+ +FLEFS+   ++ED AV+ +E +A++LQ      ++ L     ELA
Sbjct: 1  MVDKHIAKVIVDVAVFLEFSDADVVNEDSAVAMLEQIASELQCMENTEQESLALQFKELA 60

Query: 61 PHYGEHSDFVRALPRTIGL 79
            YG+   FV +L  T+GL
Sbjct: 61 SQYGDKRAFVESLSDTLGL 79