BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4139.p         (275 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004155725.1| hypothetical protein Varpa_3429 [Variovorax ...   214   8e-54
ref|ZP_07281193.1| hypothetical protein SSMG_05233 [Streptomyces...   145   5e-33
dbj|BAJ32211.1| hypothetical protein KSE_64520 [Kitasatospora se...   109   4e-22

>ref|YP_004155725.1| hypothetical protein Varpa_3429 [Variovorax paradoxus EPS]
 gb|ADU37614.1| hypothetical protein Varpa_3429 [Variovorax paradoxus EPS]
          Length = 277

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 121/275 (44%), Positives = 162/275 (58%), Gaps = 16/275 (5%)

Query: 4   QISFRDLHDALL-AHDGESVYAEVLLPWLRTSGDQQTWLRSLGHREGAPVPLVSLEESWE 62
           Q  +RDL DAL  +   E V+  +L PWL    +++ WL +   R  +P P+V+ E+SW 
Sbjct: 5   QAPYRDLFDALYKSAPAEDVFETLLRPWLDAHAEERDWLNAFAQRS-SPAPIVT-EDSWR 62

Query: 63  LYALSRVLDLLILGFQKPGPDAGWEGPQISMDEFLEFIKVLGLRSLTPASFSPFHHEIVD 122
           LYALSRV  +L+L FQ+     GWEGP +S+ ++L F+  L  R      +SPF HEIV+
Sbjct: 63  LYALSRVNQVLLLAFQR-NEGEGWEGPNLSLPDYLAFMTGLCCRVADETDYSPFFHEIVE 121

Query: 123 ARVSDKASPV------PEIISSRWPCVMLGNLLVLRGGIELEANAKVLDPDLARSTTLYW 176
           A  +++  P+       E+    WP +MLG ++  R G+ +      L  ++A S+TLYW
Sbjct: 122 A--AEEKRPLFSRRKALELARVDWPALMLGTMMFSRAGVAVSCAPGALHTEIATSSTLYW 179

Query: 177 AYRRKARPHRDLSHGWGSNSQWRTAFRRDYAIGNMQYFNVDGKYDLHAKGSELKEVLEAC 236
              RK R   DLS GWGSNSQWRT FRRDY +G    FN DGK+DL A G    E     
Sbjct: 180 QRWRKHRRTSDLSDGWGSNSQWRTPFRRDYVVGEELLFNADGKHDLAAPGLPASEY---- 235

Query: 237 PELTLDERIELLTNRCFIRCVKQHDDLLPYDDRFQ 271
            +LT+ ERIELLT+RCF+RC K  DD  PY DR Q
Sbjct: 236 DDLTVAERIELLTHRCFVRCEKPDDDFHPYGDRIQ 270


>ref|ZP_07281193.1| hypothetical protein SSMG_05233 [Streptomyces sp. AA4]
 gb|EFL09562.1| hypothetical protein SSMG_05233 [Streptomyces sp. AA4]
          Length = 335

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 96/276 (34%), Positives = 143/276 (51%), Gaps = 37/276 (13%)

Query: 1   MLNQISFRDLHDALLAHDGESVYAEVLLPWLRTSGDQQTWLRSLGHREG-APVPLVS--- 56
           +L   + R+L+ A+  + G +++++VL PWL    D+     ++G RE  AP+ +     
Sbjct: 52  VLTPTTLRELYYAVHGYPGSALFSDVLSPWL----DEH----AVGMREMLAPLAVCGQWQ 103

Query: 57  -LEESW-----ELYALSRVLDLLILGFQKPGPDAGWEGP------------QISMDEFLE 98
             E  W     + YALSR+ DLL+LGFQ   PD G E P            +++ DE++ 
Sbjct: 104 RTEYVWGDLLEQAYALSRISDLLLLGFQSGLPD-GAETPFAHHLHLPEHDVRVTADEYVR 162

Query: 99  FIKVLGLRSLTPASFSPFHHEIVDARVSDKASPVPEIISSRWPCVMLGNLLVLRGGIELE 158
           F   LG+R +  A F PF HEI     S       EI++ +WPC+M G LL +R G+ + 
Sbjct: 163 FFSALGMRRVEVARFDPFFHEIAAVEQSGDPEEPIEIVAEQWPCLMFGELLFVRAGVRVR 222

Query: 159 ANAKVLDPDLARSTTLYWAYRRKARPHRDLSHGWGSNSQWRTAFRRDYAIGNMQYFNVDG 218
           A  +     LA  +TL  ++ R+ RP  D S GWG NSQW+T FRRDY   +   F+VD 
Sbjct: 223 AGERHAKAGLADRSTLQESFLRRHRPTSDGSLGWGHNSQWKTDFRRDYLTADAYRFHVDA 282

Query: 219 KYDLHAKGSELKEVLEACPELTLDERIELLTNRCFI 254
             D+        E   +  ELT  ER +L+ +RC +
Sbjct: 283 NADID------HESPFSTAELTPAERRDLVRHRCAV 312


>dbj|BAJ32211.1| hypothetical protein KSE_64520 [Kitasatospora setae KM-6054]
          Length = 697

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 8   RDLHDALLAHDGESVYAEVLLPWLRTS--GDQQTWLRSLGHREGAPVP---LVSLEESWE 62
           R+L++AL+   GE   A VL  W   +  G  +    +  +      P     +L E  E
Sbjct: 409 RELYEALMWMGGEGTTAAVLDGWAAQALPGYPERLAAAAAYDTFTAQPEDERRTLAE--E 466

Query: 63  LYALSRVLDLLILGFQKP-GPDAGWEGPQISMD--EFLEFIKVLGLRSL-TPASFSPFHH 118
           LYALSR  D L   FQ P G     +G ++ +D   +  F   LG+        F PF H
Sbjct: 467 LYALSRTADALATEFQPPYGDGPARDGTRLGLDLAGYRAFFTRLGMTGTGAKGGFDPFLH 526

Query: 119 EIVDARVSDKASPVPEIISSRWPCVMLGNLLVLRGGIELEANAKVLDPDLARSTTLYWAY 178
           EI +   ++      E++   WP    G LL +R G+ + A A+V +P  A ++ +YWA+
Sbjct: 527 EIAELVPAEDPDAPIELLDVLWPGFTFGELLFVRAGVRVRAGARVAEPGWADASPMYWAF 586

Query: 179 RRKARPHRDLSHGWGSNSQWRTAFRRDYAIGNMQYFNV 216
           RR+ RP  DLSHGWGSNSQW T  R D+   +    NV
Sbjct: 587 RRRGRPPVDLSHGWGSNSQWGTNLRMDFRTADGDRLNV 624