BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4136.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776707.1| hypothetical protein Hsero_3318 [Herbaspiril... 471 e-131 ref|ZP_06688041.1| conserved hypothetical protein [Achromobacter... 350 2e-94 gb|EGP43895.1| hypothetical protein AXXA_23830 [Achromobacter xy... 349 2e-94 ref|YP_003979418.1| hypothetical protein AXYL_03383 [Achromobact... 348 4e-94 ref|NP_880567.1| hypothetical protein BP1875 [Bordetella pertuss... 347 1e-93 >ref|YP_003776707.1| hypothetical protein Hsero_3318 [Herbaspirillum seropedicae SmR1] gb|ADJ64799.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 263/284 (92%), Positives = 271/284 (95%) Query: 1 MPETATASPAVPIHPATAPALSASSSALDVRLAARSGAFTGHTSGVASAHVQVNLAILPA 60 MPETATA P PA PALSA+S+AL+VRLAARSGAF+GHTSGVASAHVQVNLAILPA Sbjct: 1 MPETATALSTAPHQPAPPPALSAASTALEVRLAARSGAFSGHTSGVASAHVQVNLAILPA 60 Query: 61 ALADDFLAFCERNPIPCPLLAVSKPGSPALPALGLDLDVRSDVPRYHLWRYGERVAEVND 120 ALADDFLAFCERNPIPCPLLAVS+PGSPALPALGLDLDVRSDVPRYHLWR+GERVAEV+D Sbjct: 61 ALADDFLAFCERNPIPCPLLAVSEPGSPALPALGLDLDVRSDVPRYHLWRHGERVAEVSD 120 Query: 121 LRAVWRDDLVTFALGCSFSFEHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTV 180 LR VWRDDLVTFALGCSFSFEHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTV Sbjct: 121 LREVWRDDLVTFALGCSFSFEHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTV 180 Query: 181 VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDPALIGIADIHQPDYGEAVDIHADELPV 240 VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDPALIGIADI PDYGEAVDI ADELPV Sbjct: 181 VSMRPLKAADAIRAIQITARTPQVHGAPIHIGDPALIGIADIDHPDYGEAVDIRADELPV 240 Query: 241 FWACGVTPQAAIVAARPEFCITHAPGYMLVTDKLNSELLLDAQA 284 FWACGVTPQAAIVAARPEFCITHAPGYMLVTDKLNSELLL+ QA Sbjct: 241 FWACGVTPQAAIVAARPEFCITHAPGYMLVTDKLNSELLLEPQA 284 >ref|ZP_06688041.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF75048.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 268 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 173/254 (68%), Positives = 207/254 (81%) Query: 27 ALDVRLAARSGAFTGHTSGVASAHVQVNLAILPAALADDFLAFCERNPIPCPLLAVSKPG 86 A RL ARSG TG T+ +A HVQ NLAILP ALA DFL FC+RNP PCPLLA+S+PG Sbjct: 14 ARQARLDARSGRLTGPTANLAPGHVQANLAILPRALAADFLHFCQRNPKPCPLLAMSEPG 73 Query: 87 SPALPALGLDLDVRSDVPRYHLWRYGERVAEVNDLRAVWRDDLVTFALGCSFSFEHALLA 146 SPALP LG D+D+R+D+PRY +W+ GE VAE D+R +WRDDLV+F +GCSFSFE A+L Sbjct: 74 SPALPELGQDIDIRTDIPRYRVWQNGELVAEPTDVRDIWRDDLVSFLIGCSFSFEEAMLD 133 Query: 147 AGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTVVSMRPLKAADAIRAIQITARTPQVHG 206 G+P+RH+ +G NV MYRTNIPT P G F GP VVSMRPLKAADAIRAIQ+T+R P VHG Sbjct: 134 NGLPVRHIEQGCNVPMYRTNIPTHPAGAFSGPLVVSMRPLKAADAIRAIQVTSRFPSVHG 193 Query: 207 APIHIGDPALIGIADIHQPDYGEAVDIHADELPVFWACGVTPQAAIVAARPEFCITHAPG 266 AP+HIGDPALIGIADI +PDYG+AV+I E+PVFWACGVTPQ+ + + RPEFCITHAPG Sbjct: 194 APVHIGDPALIGIADIDRPDYGDAVEIRPGEMPVFWACGVTPQSVVSSVRPEFCITHAPG 253 Query: 267 YMLVTDKLNSELLL 280 +MLVTD +NS + + Sbjct: 254 HMLVTDLVNSRMAM 267 >gb|EGP43895.1| hypothetical protein AXXA_23830 [Achromobacter xylosoxidans AXX-A] Length = 270 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 172/250 (68%), Positives = 206/250 (82%) Query: 31 RLAARSGAFTGHTSGVASAHVQVNLAILPAALADDFLAFCERNPIPCPLLAVSKPGSPAL 90 RL ARSG TG T+ +A HVQ NLAILP ALA DFL FC+RNP PCPLLA+S+PG P+L Sbjct: 20 RLDARSGKLTGPTANLAPGHVQANLAILPRALAADFLHFCQRNPKPCPLLAMSEPGDPSL 79 Query: 91 PALGLDLDVRSDVPRYHLWRYGERVAEVNDLRAVWRDDLVTFALGCSFSFEHALLAAGIP 150 P LG D+D+R+D+PRY +W GE VAE D+R +WRDDLV+F +GCSFSFE A+L G+P Sbjct: 80 PDLGQDIDIRTDIPRYRVWHNGELVAEPTDVRDLWRDDLVSFLIGCSFSFEEAMLDNGLP 139 Query: 151 LRHVSEGRNVAMYRTNIPTQPVGVFQGPTVVSMRPLKAADAIRAIQITARTPQVHGAPIH 210 +RH+ +G NV MYRTNIPT GVF GP VVSMRPLKAADAIRAIQ+T+R P VHGAP+H Sbjct: 140 VRHIEQGCNVPMYRTNIPTHAAGVFGGPLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVH 199 Query: 211 IGDPALIGIADIHQPDYGEAVDIHADELPVFWACGVTPQAAIVAARPEFCITHAPGYMLV 270 IGDPALIGIADI +PDYG+AV+IHA E+PVFWACGVTPQ+ + A RP+FCITHAPG+MLV Sbjct: 200 IGDPALIGIADIDRPDYGDAVEIHAGEMPVFWACGVTPQSVVAAVRPDFCITHAPGHMLV 259 Query: 271 TDKLNSELLL 280 TD +NS + + Sbjct: 260 TDLVNSRMAI 269 >ref|YP_003979418.1| hypothetical protein AXYL_03383 [Achromobacter xylosoxidans A8] gb|ADP16703.1| hypothetical protein AXYL_03383 [Achromobacter xylosoxidans A8] Length = 268 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 176/263 (66%), Positives = 209/263 (79%), Gaps = 1/263 (0%) Query: 17 TAPALSASSS-ALDVRLAARSGAFTGHTSGVASAHVQVNLAILPAALADDFLAFCERNPI 75 T PA+ S A RL ARSG TG T+ +A HVQ NLAILP ALA DFL FC+RNP Sbjct: 3 TNPAVRTSVELARQARLDARSGKLTGPTANLAPGHVQANLAILPRALAADFLHFCQRNPK 62 Query: 76 PCPLLAVSKPGSPALPALGLDLDVRSDVPRYHLWRYGERVAEVNDLRAVWRDDLVTFALG 135 PCPLLA+S+PG PALP LG D+D+RSD+PRY +W+ GE VAE D+R +WRDDLV+F +G Sbjct: 63 PCPLLAMSEPGDPALPELGQDIDIRSDIPRYRVWQNGELVAEPTDVRDLWRDDLVSFLIG 122 Query: 136 CSFSFEHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTVVSMRPLKAADAIRAI 195 CSFSFE A+L G+P+RH+ +G NV MYRTN+PT GVF GP VVSMRPLKAADAIRAI Sbjct: 123 CSFSFEEAMLDNGLPVRHIEQGCNVPMYRTNVPTHAAGVFGGPLVVSMRPLKAADAIRAI 182 Query: 196 QITARTPQVHGAPIHIGDPALIGIADIHQPDYGEAVDIHADELPVFWACGVTPQAAIVAA 255 Q+T+R P VHGAP+HIGDPALIGIADI +PDYG+ V+I E+PVFWACGVTPQ+ + A Sbjct: 183 QVTSRFPSVHGAPVHIGDPALIGIADISRPDYGDPVEIREGEMPVFWACGVTPQSVVAAV 242 Query: 256 RPEFCITHAPGYMLVTDKLNSEL 278 RPEFCITHAPG+MLVTD +NS + Sbjct: 243 RPEFCITHAPGHMLVTDLINSRM 265 >ref|NP_880567.1| hypothetical protein BP1875 [Bordetella pertussis Tohama I] emb|CAE42158.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gb|AEE67182.1| hypothetical protein BPTD_1848 [Bordetella pertussis CS] Length = 264 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 173/258 (67%), Positives = 206/258 (79%) Query: 21 LSASSSALDVRLAARSGAFTGHTSGVASAHVQVNLAILPAALADDFLAFCERNPIPCPLL 80 LS + + RL AR G TG T+ +A HVQ NLAILP A+A DFL FC+RNP PCPLL Sbjct: 4 LSLAGAGHQARLDARGGMLTGPTANLAPGHVQANLAILPQAVAGDFLRFCQRNPKPCPLL 63 Query: 81 AVSKPGSPALPALGLDLDVRSDVPRYHLWRYGERVAEVNDLRAVWRDDLVTFALGCSFSF 140 AVS+PG P+LP LGLD+D+R+DVPRY +WR G+ V E D+R +WRDDLV F +GCSFSF Sbjct: 64 AVSEPGDPSLPELGLDIDIRTDVPRYRVWRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSF 123 Query: 141 EHALLAAGIPLRHVSEGRNVAMYRTNIPTQPVGVFQGPTVVSMRPLKAADAIRAIQITAR 200 E A+L G+P+RH+ +G NV MYRTNI T P G F GP VVSMRPLKAADAIRAIQ+T+R Sbjct: 124 EEAMLENGLPVRHIEQGCNVPMYRTNIATHPAGPFSGPLVVSMRPLKAADAIRAIQVTSR 183 Query: 201 TPQVHGAPIHIGDPALIGIADIHQPDYGEAVDIHADELPVFWACGVTPQAAIVAARPEFC 260 P VHGAP+H+GDPALIGIAD+ +PDYG+AV+I A E+PVFWACGVTPQ+ + A RPEFC Sbjct: 184 FPSVHGAPVHLGDPALIGIADLGRPDYGDAVEIRAGEIPVFWACGVTPQSVVAAVRPEFC 243 Query: 261 ITHAPGYMLVTDKLNSEL 278 ITHAPG+MLVTD LNS L Sbjct: 244 ITHAPGHMLVTDLLNSRL 261