BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4135.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776706.1| LysR family transcription regulator protein ... 518 e-145 ref|YP_004235421.1| LysR family transcriptional regulator [Acido... 356 3e-96 ref|YP_002945177.1| LysR family transcriptional regulator [Vario... 335 7e-90 ref|YP_548609.1| LysR family transcriptional regulator [Polaromo... 290 1e-76 gb|EFV85197.1| hypothetical protein HMPREF0005_03856 [Achromobac... 186 5e-45 >ref|YP_003776706.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64798.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 287/301 (95%), Positives = 291/301 (96%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA Sbjct: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 GQRFQRLAVKLLDMQRQIRQELGG+SAGPL LRIGSIESVVHSWLPAWLQEIR RYPDFA Sbjct: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA 120 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL Sbjct: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 Query: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVIEPRVHAISSISAMVQLVEGGFGVATLPRA 240 EELAAHDLITFQRGSQPHQGLLQLCQEWGV PR+HAISSISAMVQLVEGGFGVATLPRA Sbjct: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVANPRIHAISSISAMVQLVEGGFGVATLPRA 240 Query: 241 SVRELTRRLPLRILRCEATLPPLQIHASYREDPSSSLAELVLDSALEHARRTQGKGRATE 300 SVR+LTRRLPLRILRC+A LP LQIHASYREDPSSSLAELVLDSALEHARR Q KGR E Sbjct: 241 SVRQLTRRLPLRILRCQAQLPALQIHASYREDPSSSLAELVLDSALEHARRAQIKGRTAE 300 Query: 301 K 301 K Sbjct: 301 K 301 >ref|YP_004235421.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46854.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 305 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 195/292 (66%), Positives = 227/292 (77%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNLRFVEAFHWA SLKSITRAAEKLHITQS +SSRIASLE ELGVVLLDRRE+QFRLT A Sbjct: 4 MNLRFVEAFHWAVSLKSITRAAEKLHITQSALSSRIASLEAELGVVLLDRRERQFRLTAA 63 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 GQRFQRLAV+LL +QR++++ELG + P +LRIG+IESVVHSWL WLQE+R P F Sbjct: 64 GQRFQRLAVQLLALQRRVKEELGSSPTAPAVLRIGAIESVVHSWLTGWLQEMRKSRPGFE 123 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 LELTV+TS VL +Q+RRGAQDLVFT +D VR+ M PMEMVFVGH+ R + L Sbjct: 124 LELTVDTSAVLADQVRRGAQDLVFTGMPVADNGVRNHSMAPMEMVFVGHKALHTERHYDL 183 Query: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVIEPRVHAISSISAMVQLVEGGFGVATLPRA 240 LA HDL+TF RGSQPHQ L++L QE V PRVHA+SSISAM+QLVEG FG+A LPRA Sbjct: 184 ARLAQHDLLTFLRGSQPHQTLMKLFQEAAVPVPRVHAVSSISAMLQLVEGEFGIALLPRA 243 Query: 241 SVRELTRRLPLRILRCEATLPPLQIHASYREDPSSSLAELVLDSALEHARRT 292 R L+ R+PLR+L + L PL IHA +REDP S +AE VL SA +A RT Sbjct: 244 VTRHLSGRMPLRVLPSDCVLTPLPIHACFREDPGSDIAETVLGSAQAYAART 295 >ref|YP_002945177.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19911.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 301 Score = 335 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 185/299 (61%), Positives = 225/299 (75%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNLRFVEAFHWA +LKS+TRAAEKLH+TQS +SSRIA+LE ELGV+LLDRR+KQFRLTVA Sbjct: 1 MNLRFVEAFHWAVALKSVTRAAEKLHLTQSALSSRIAALERELGVLLLDRRDKQFRLTVA 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 GQRF A KLL+MQ I+ E+G + +LR+G+IESVVHSWL WL+ +++ +PDF Sbjct: 61 GQRFHAFAQKLLEMQMHIKAEMGSGAVREAVLRVGAIESVVHSWLTGWLKHMQATHPDFE 120 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 LELTVET+PVL +Q++RG QDLVF + + VR+R + PM M FVGHRE R + L Sbjct: 121 LELTVETTPVLVDQLQRGKQDLVFGALPATGDGVRTRAVPPMPMCFVGHRELHLKRRYRL 180 Query: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVIEPRVHAISSISAMVQLVEGGFGVATLPRA 240 +L + DL+TFQRGSQPH LL+L +E G PRVHAISSISAM QLVE GFGVA LPRA Sbjct: 181 PDLLSLDLLTFQRGSQPHVALLELFREAGSPPPRVHAISSISAMAQLVEAGFGVAGLPRA 240 Query: 241 SVRELTRRLPLRILRCEATLPPLQIHASYREDPSSSLAELVLDSALEHARRTQGKGRAT 299 V L RRLPLR+L C+ TL PL I+ASYR+DPSS L E L SA+ HA G + + Sbjct: 241 VVEPLARRLPLRVLPCDVTLEPLPIYASYRDDPSSPLPEAALGSAVVHASHRMGSSKKS 299 >ref|YP_548609.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE43711.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 304 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 168/289 (58%), Positives = 216/289 (74%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNLRFVEAF+W ASLKSI+RAAEKL++TQS MSSRIA+LEEELG++LLDRR+KQF+LTVA Sbjct: 1 MNLRFVEAFYWVASLKSISRAAEKLYLTQSAMSSRIATLEEELGILLLDRRDKQFKLTVA 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 G RF A KLL++QR+++ E+G A + +RIG+IESV+HSWL WL+++R+ YP Sbjct: 61 GARFLVYAQKLLELQREVKAEMGSGQAMAMSMRIGAIESVLHSWLIPWLEKLRADYPGLE 120 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 LELTVET+P+L +QI+RG DLVF S VRS+ + M+M FVGH + R + L Sbjct: 121 LELTVETTPILIDQIQRGTLDLVFAVLPASAEGVRSQALPSMDMAFVGHPDLHKKRIYKL 180 Query: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVIEPRVHAISSISAMVQLVEGGFGVATLPRA 240 +ELA +L+TFQ+GSQPH LL L ++ + +VHAISSISAMVQLV+GGFGVA LPRA Sbjct: 181 DELAGMELLTFQKGSQPHVTLLDLFRQRRMEPKKVHAISSISAMVQLVQGGFGVALLPRA 240 Query: 241 SVRELTRRLPLRILRCEATLPPLQIHASYREDPSSSLAELVLDSALEHA 289 +V LT L++L C+A L L I+ASYR DPSS E V+ SA+ A Sbjct: 241 AVERLTGFARLKLLTCDAKLQSLPINASYRTDPSSRTVETVVQSAIAFA 289 >gb|EFV85197.1| hypothetical protein HMPREF0005_03856 [Achromobacter xylosoxidans C54] Length = 305 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 114/287 (39%), Positives = 168/287 (58%), Gaps = 6/287 (2%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MN RFVEAF W+A L S A+++LHITQ+ +++RIASLEE++G L +R K+ RLT Sbjct: 3 MNTRFVEAFLWSARLGSFRAASDRLHITQAAVANRIASLEEDIGARLFERDAKELRLTAV 62 Query: 61 GQRFQRLAVKLLDMQRQIRQ--ELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPD 118 G R +LL +++QI G G L+RIG+IE+VVH+WL +L +RS YP Sbjct: 63 GTRLLDYGERLLQLRQQILSLGRTGDEVFG--LVRIGAIETVVHTWLIGFLTNLRSTYPG 120 Query: 119 FALELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSH 178 ++LT ET+ L +R G D+ F + + +DT V S PMEM +VG + Sbjct: 121 IEVQLTSETTRALHRGLREGTLDIAFQTDLLTDTGVISTPCLPMEMGWVG--PAGDEEAL 178 Query: 179 TLEELAAHDLITFQRGSQPHQGLLQLCQEWGVIEPRVHAISSISAMVQLVEGGFGVATLP 238 T+++L ++T GSQPH+ L L +E G+ +VH +SSISA+ +LV GFG A +P Sbjct: 179 TVQQLLGEPVLTMSPGSQPHEALKGLFREAGLPLGKVHCVSSISALARLVRSGFGRALVP 238 Query: 239 RASVRELTRRLPLRILRCEATLPPLQIHASYREDPSSSLAELVLDSA 285 + E R ++++RC+ +PP + SY E S LV + A Sbjct: 239 LPPIYEYVARGEVQMIRCDVPVPPQLLVVSYLEGAGSDAIRLVAELA 285