BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4134.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776705.1| transcription regulator protein [Herbaspiril... 371 e-101 ref|ZP_08732348.1| transcription regulator protein [Vibrio nigri... 164 1e-38 ref|YP_643325.1| GntR family transcriptional regulator [Rubrobac... 148 5e-34 ref|ZP_06971981.1| GntR domain protein [Ktedonobacter racemifer ... 145 6e-33 emb|CAR47841.1| putative transcriptional regulator, FadR family ... 130 2e-28 >ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64797.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 225/239 (94%), Positives = 235/239 (98%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL Sbjct: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHID 120 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLE+LFDARLIIETGVAALAATHI+ Sbjct: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 Query: 121 DAELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRS 180 DAEL RLARNVEDEARLLSDPAAF+AADVEFHEAIIEACNNPFLQS+AGSLYMLGKKSRS Sbjct: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 Query: 181 ITSRIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSAGRSQNESVLD 239 ITSRIP+TLERSLQDHR ILDALKARDP +ASEAMR+HL+RVRDAYRSAGR++NESV D Sbjct: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 >ref|ZP_08732348.1| transcription regulator protein [Vibrio nigripulchritudo ATCC 27043] gb|EGU60033.1| transcription regulator protein [Vibrio nigripulchritudo ATCC 27043] Length = 242 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 142/228 (62%) Query: 2 SFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALL 61 S+ I S+SE VA+ +L I++G ++LP ERE++ L V RP+VREA+RGLA+L Sbjct: 11 SYKSIEASSVSEAVAKYILEQIQTGNFAAGERLPTEREISNALEVSRPSVREALRGLAIL 70 Query: 62 GLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHIDD 121 G+++ +QG G +VSSL+ ELL PL+ + L +++ L+DAR++IE G+ A+ I + Sbjct: 71 GVVQSKQGGGAYVSSLDAFELLSPLQFYMTLEKLSVDQLYDARVVIECGIVESASVLIQE 130 Query: 122 AELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRSI 181 +L RL ++ + DP+ F D EFH I A NPF+Q ++ SL +LG R + Sbjct: 131 PDLNRLNDLIQQQCEATDDPSLFRKLDTEFHRVIANASGNPFMQRMSESLNVLGMGYRKM 190 Query: 182 TSRIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSA 229 S P+ ++RS++DH+ I++AL R+ A AMR H+ VR + R + Sbjct: 191 ASETPNLIQRSIEDHKLIVEALTLRNAEMAKSAMRLHMEHVRISTRES 238 >ref|YP_643325.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gb|ABG03513.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus DSM 9941] Length = 247 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 95/222 (42%), Positives = 133/222 (59%) Query: 8 QKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIR 67 + + +E+V RL +I P +LPPEREL ++LGV RP +REA++ LA L L+RIR Sbjct: 10 RDTTTERVIGRLKELIGERKFGPGDKLPPERELCSLLGVSRPILREALQALAALRLVRIR 69 Query: 68 QGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHIDDAELARL 127 QG+G +V+SL+T LLEPL ++ L+P +E L+ AR +IE G+ LAA+ + RL Sbjct: 70 QGDGVYVTSLKTDLLLEPLRFVLRLDPTAIEQLYRARQVIEVGITELAASSMTPEAERRL 129 Query: 128 ARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRSITSRIPS 187 + + + DP AFS D+E HE I NPFL V SL L + R T +P Sbjct: 130 EEILAESEAQVEDPKAFSRTDIELHETIARLVTNPFLTVVIESLNELSRAGREFTCTVPG 189 Query: 188 TLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSA 229 R+L++HR I+ ALKARD A AM+ HL V A++SA Sbjct: 190 VTPRALEEHRRIVAALKARDGRAAGRAMKEHLENVLAAWQSA 231 >ref|ZP_06971981.1| GntR domain protein [Ktedonobacter racemifer DSM 44963] gb|EFH84701.1| GntR domain protein [Ktedonobacter racemifer DSM 44963] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 131/220 (59%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F+ + ++SE + +LL +++ L+P +LP ER+LA L V RP++REA+R L+++ Sbjct: 2 FEISPKSALSEGIVNKLLALLKERKLQPGDRLPSERDLAEQLQVSRPSLREALRALSIMH 61 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHIDDA 122 ++ IRQG GT++SSLE + L+E L+ + L T +LF+AR ++E G+ LAA I D Sbjct: 62 VVEIRQGSGTYISSLEPKRLVEHLDFVFALADSTYLSLFEARKVVEVGICGLAAQRITDE 121 Query: 123 ELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRSIT 182 E+ RL +E L+D + ADVE HE I EA +P L + S+ L SR T Sbjct: 122 EITRLESCLEKSLLGLTDAELYFQADVELHEIITEAAASPILSRIMASISHLSLASRQRT 181 Query: 183 SRIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRV 222 + +P + ++DHR I+ AL+ RD A AM HLL V Sbjct: 182 AVLPGIAYQVIEDHRAIIQALRQRDSEAARLAMYQHLLHV 221 >emb|CAR47841.1| putative transcriptional regulator, FadR family [Rhodococcus sp. PY11] Length = 239 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F + +S QV ++ +R+G LKP +LPPERELA GVGR ++REA+R L LLG Sbjct: 10 FTAVKLGRVSRQVVEQFQEKVRAGHLKPGDRLPPERELAVQFGVGRNSMREALRELDLLG 69 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHIDDA 122 L+ R GEGTFV+ L+ P +I+L+ +++ + R + E GVAALAAT++ DA Sbjct: 70 LVTSRHGEGTFVAVPSAEALMAPFRAVIELSSTAGDSVMEFRRVFEPGVAALAATNLTDA 129 Query: 123 ELARL-ARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRSI 181 L A VE E R+ + AD +FH A NP + V +LY L K RS Sbjct: 130 GRDLLYAALVEFENRVAAGDDTVVGADADFHLMTGHATGNPTVIGVHTALYALLKDFRSN 189 Query: 182 TSR---IPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDA 225 SR PS + ++ HR I +A+ ARDP A+ AMR HL V A Sbjct: 190 LSRSSYAPS--DTAVAGHRLIYEAILARDPDAAAAAMREHLDDVSGA 234