BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4132.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001022683.1| signal transduction histidine kinase-like pr... 428 e-117 emb|CBA30613.1| hypothetical protein Csp_C24430 [Curvibacter put... 426 e-117 ref|YP_547157.1| PAS/PAC sensor signal transduction histidine ki... 420 e-115 ref|YP_524975.1| PAS/PAC sensor signal transduction histidine ki... 408 e-112 ref|ZP_08405890.1| PAS/PAC sensor signal transduction histidine ... 391 e-106 >ref|YP_001022683.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gb|ABM96448.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 410 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 233/392 (59%), Positives = 283/392 (72%), Gaps = 27/392 (6%) Query: 75 RDKLALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEVLGHNMHELVHHSHEHGGH 134 +D+L LLL+STG+GI+GID++G CTF+NRA A LGY EVLG NMH L+HHSH +G H Sbjct: 30 QDRLTLLLESTGDGIFGIDIDGCCTFMNRAAAQGLGYRTEEVLGRNMHALIHHSHGNGAH 89 Query: 135 YPEAECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQIIDGGQVRGAVIAFSDISK 194 Y EA+CPI AFR+G CR+D EV WRAD S F EYSSY I++ G V GAV+ F DI+ Sbjct: 90 YAEADCPIFNAFRRGLPCRIDHEVLWRADDSSFQAEYSSYPIVEAGAVVGAVVTFVDITA 149 Query: 195 RRQAEEQLQRAKAELE-------VRVAERTRELSAALRQVRQLSAHAHSVREDERTRIAR 247 R+QAEEQL RAK ELE RVAERTR LS AL Q R+LSA+ +VRE+ERTRIAR Sbjct: 150 RKQAEEQLVRAKRELERTNDRLEQRVAERTRALSDALAQRRRLSAYLETVREEERTRIAR 209 Query: 248 EIHDELGSLLVALKLDVNWMAKRVADLDPVARKCEAMSRLIETAVDNVGRIITDLRPSIL 307 EIHDELGSLLVALK+DVNW+ KRVAD P+A KCE M LI+TAVD VGRIITDLRPSIL Sbjct: 210 EIHDELGSLLVALKMDVNWLEKRVADRLPLAAKCEGMGALIDTAVDKVGRIITDLRPSIL 269 Query: 308 DHQGLIAALEWQVQEFSEATELPCDVEFDISPQAFAPQGTLATAAFRIFQEMLSNVAQHS 367 DHQGL AALEWQ QE+ E+ EL D++ ++ P+G A A FRIFQE+LSN+A+H+ Sbjct: 270 DHQGLWAALEWQAQEWLESAELEADIQVHVAAGVAPPEGGSAIAVFRIFQELLSNIARHA 329 Query: 368 QATQV--KIVVRLTPDALL-MEVEDNGVGVPAAALANPKSYGVMGMRERALHFAGALNIE 424 +A +V +IVV P+ +L ++V D+GVG A AL +P+SYGVMGMRERA HF G L I+ Sbjct: 330 KARRVGIRIVVDAPPEPVLYLDVRDDGVGTTAEALNDPRSYGVMGMRERAAHFGGRLTID 389 Query: 425 NAVDGAKEAGVAPESGKSIRNPGTRVRLVLPL 456 +A GT VRLV+PL Sbjct: 390 SA-----------------PGQGTLVRLVMPL 404 >emb|CBA30613.1| hypothetical protein Csp_C24430 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 400 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 220/372 (59%), Positives = 264/372 (70%), Gaps = 13/372 (3%) Query: 68 APPGGLLRDKLALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEVLGHNMHELVHH 127 P L RD+L+LLL+STGEGI+GID+ GRCTFINRAGAAMLGY EVLG NMHEL HH Sbjct: 15 GPTQPLWRDRLSLLLESTGEGIFGIDMNGRCTFINRAGAAMLGYESHEVLGANMHELAHH 74 Query: 128 SHEHGGHYPEAECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQIIDGGQVRGAVI 187 SH G HYPE CPI AFRK CR+D E+FWR DGS FA EYSS+ I+D G V+GAV+ Sbjct: 75 SHPGGEHYPEHTCPIFNAFRKALPCRIDTELFWRRDGSAFAVEYSSHPIVDSGLVQGAVV 134 Query: 188 AFSDISKRRQAEEQLQRAKAELEVRVAERTRELSAALRQVRQLSAHAHSVREDERTRIAR 247 F DIS RR AEE L+RA ELE RV ERT+ LS AL+Q+R+L+A++HSVRE+ERTRIAR Sbjct: 135 TFVDISARRNAEEALRRAHTELEQRVEERTQALSEALQQLRELTAYSHSVREEERTRIAR 194 Query: 248 EIHDELGSLLVALKLDVNWMAKRVADL------------DPVARKCEAMSRLIETAVDNV 295 E+HDELGSLLVALK+DV W+ KR+ + D + KC MS+LIE AVDNV Sbjct: 195 EVHDELGSLLVALKMDVGWLEKRLGEQPGRAPDAAQAMRDQMQHKCRNMSQLIEAAVDNV 254 Query: 296 GRIITDLRPSILDHQGLIAALEWQVQEFSEATELPCDVEFDISPQAFAPQGTLATAAFRI 355 GRIITDLRPSILDHQGL AL+WQ EF ++ E+ D D+S P T A FRI Sbjct: 255 GRIITDLRPSILDHQGLWVALDWQAHEFVQSAEMGLDWHMDVSAAQPVPD-THTIAIFRI 313 Query: 356 FQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKSYGVMGMRERAL 415 FQEMLSNV +H+QAT + I +R + + V+DNG G P A P +YG+MGMRERA Sbjct: 314 FQEMLSNVGRHAQATHLDISIRADASDITISVKDNGRGAPMQAFDAPDAYGIMGMRERAR 373 Query: 416 HFAGALNIENAV 427 H G+L I + + Sbjct: 374 HLGGSLEIASQI 385 >ref|YP_547157.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas sp. JS666] gb|ABE42259.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 410 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 226/379 (59%), Positives = 274/379 (72%), Gaps = 15/379 (3%) Query: 63 AAAALAPPGG--LLRDKLALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEVLGHN 120 A A P G + RDKL+ LL+STGEGI+GID++GRCTFINRAGA LG+ PAEVLGHN Sbjct: 18 AVPAHLPAAGQVVWRDKLSQLLESTGEGIFGIDMDGRCTFINRAGAEQLGWLPAEVLGHN 77 Query: 121 MHELVHHSHEHGGHYPEAECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQIIDGG 180 MHEL HHSH G HYPE CPI AFRK CR+D E+FWR +GS FA EYSSY I++GG Sbjct: 78 MHELAHHSHAGGAHYPEHLCPIFNAFRKALPCRIDTELFWRKNGSAFAVEYSSYPIVEGG 137 Query: 181 QVRGAVIAFSDISKRRQAEEQLQRAKAELEVRVAERTRELSAALRQVRQLSAHAHSVRED 240 V+GAV+ F DIS RRQAE+ L++A A LE RV+ERT+ LS AL Q+R+L+A+ HSVRED Sbjct: 138 VVQGAVVTFVDISARRQAEDALRQAHAVLEQRVSERTQALSEALEQLRELTAYTHSVRED 197 Query: 241 ERTRIAREIHDELGSLLVALKLDVNWMAKRVAD-----LDP-------VARKCEAMSRLI 288 ERTRIARE+HDELGSLLVALK+DV W+ KR+ + LD + KC+ M RLI Sbjct: 198 ERTRIAREVHDELGSLLVALKMDVGWLDKRLGEQQQRSLDEAQSMRERMRSKCQNMGRLI 257 Query: 289 ETAVDNVGRIITDLRPSILDHQGLIAALEWQVQEFSEATELPCDVEFDISPQAFAPQGTL 348 E AVDNVGRIITDLRPSILDHQGL AAL+WQ EF + EL D + D++ A P+ Sbjct: 258 EAAVDNVGRIITDLRPSILDHQGLWAALDWQAHEFVLSAELALDWQMDVAGAAPLPEQA- 316 Query: 349 ATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKSYGVM 408 A FRIFQEMLSNV +H+QA++V I ++ TP + + V DNG G AAA +YGVM Sbjct: 317 AIGIFRIFQEMLSNVGRHAQASRVAITIQATPRDISIAVRDNGKGAEAAAFEAANAYGVM 376 Query: 409 GMRERALHFAGALNIENAV 427 GMRERA H G L+I + + Sbjct: 377 GMRERARHLGGTLDISSQI 395 >ref|YP_524975.1| PAS/PAC sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gb|ABD71444.1| PAS/PAC sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 412 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 217/383 (56%), Positives = 266/383 (69%), Gaps = 17/383 (4%) Query: 61 VSAAAALAPPGG----LLRDKLALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEV 116 + L PP +L+ +LALLL+STGEGIYGID+EGRCTFINRAGA M+G P EV Sbjct: 16 IDTQQVLTPPNAAMEPVLQKQLALLLESTGEGIYGIDMEGRCTFINRAGANMIGREPEEV 75 Query: 117 LGHNMHELVHHSHEHGGHYPEAECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQI 176 LG NMHEL HHSH G Y +C I AFR+G CR+D EVFW D CF EYSSY + Sbjct: 76 LGCNMHELTHHSHPGGQPYAAHDCAIFNAFRQGLPCRIDTEVFWHRDQHCFPVEYSSYPL 135 Query: 177 IDGGQVRGAVIAFSDISKRRQAEEQLQRAKAELEVRVAERTRELSAALRQVRQLSAHAHS 236 +DG V GAVI F DI++R++A + LQ AK ELE RV+ERT+ELS AL Q+R+LSA++ + Sbjct: 136 MDGDTVLGAVITFVDITERKRAADALQLAKNELEQRVSERTQELSVALGQLRELSAYSEN 195 Query: 237 VREDERTRIAREIHDELGSLLVALKLDVNWMAKRVADLDP------------VARKCEAM 284 VREDERTRIARE+HDELGSLLVALK+DVNWM KR+++ + KC M Sbjct: 196 VREDERTRIAREVHDELGSLLVALKMDVNWMDKRLSEQQQRTPHEAEAMRTRLRSKCRNM 255 Query: 285 SRLIETAVDNVGRIITDLRPSILDHQGLIAALEWQVQEFSEATELPCDVEFDISPQAFAP 344 S LIE AVDNVGRIITDLRPSILDHQGL AALEWQ EF+++ EL D + + P Sbjct: 256 SGLIERAVDNVGRIITDLRPSILDHQGLWAALEWQAHEFAQSAELALDWDMQGTDGVELP 315 Query: 345 QGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKS 404 + A A FRIFQEMLSNVA+H+QA + + +++ + L + V+DNG G A A P + Sbjct: 316 EPE-AMAVFRIFQEMLSNVARHAQAMALTLRIQVEAEVLTISVQDNGCGANALAFEAPTA 374 Query: 405 YGVMGMRERALHFAGALNIENAV 427 YGVMGMRERA HF G L I + + Sbjct: 375 YGVMGMRERARHFGGQLEISSQI 397 >ref|ZP_08405890.1| PAS/PAC sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] gb|EGI77011.1| PAS/PAC sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] Length = 397 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 209/370 (56%), Positives = 260/370 (70%), Gaps = 13/370 (3%) Query: 66 ALAPPGGLLRDKLALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEVLGHNMHELV 125 +LA P L RD+LALLL+STGEG++G++L GRC FIN AGA MLGY P EV+G NMHEL+ Sbjct: 15 SLAHP--LWRDRLALLLESTGEGMFGVNLAGRCIFINAAGARMLGYEPVEVIGRNMHELI 72 Query: 126 HHSHEHGGHYPEAECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQIIDGGQVRGA 185 HH+ + G Y E +CPI AFR+G+SCR+D EV WR DG+ F EY+S+ ++D G V GA Sbjct: 73 HHTRQDGQPYHERDCPIFNAFRQGQSCRIDNEVLWRRDGTSFPAEYTSHPVVDNGMVLGA 132 Query: 186 VIAFSDISKRRQAEEQLQRAKAELEVRVAERTRELSAALRQVRQLSAHAHSVREDERTRI 245 + DI+ R+QA + L+RAK ELE+RV ERTRELS AL Q+R+LSA S REDERTRI Sbjct: 133 MATIVDITPRKQAADALRRAKEELELRVDERTRELSDALSQMRKLSAWLDSAREDERTRI 192 Query: 246 AREIHDELGSLLVALKLDVNWMAKRVADL----------DPVARKCEAMSRLIETAVDNV 295 ARE+HDELGSLLVALK+DVNW+AKR+ + + + KC MSR+IE AV+NV Sbjct: 193 AREVHDELGSLLVALKMDVNWLAKRLGETPAPDEADALRERLRCKCHGMSRMIENAVENV 252 Query: 296 GRIITDLRPSILDHQGLIAALEWQVQEFSEATELPCDVEFDISPQAFAPQGTLATAAFRI 355 GRIITDLRPSILDHQGL AALEWQ QEF ++ EL + D+ P+ A A FRI Sbjct: 253 GRIITDLRPSILDHQGLWAALEWQAQEFVQSAELDLTWQMDVQAGVELPEPA-AMAVFRI 311 Query: 356 FQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKSYGVMGMRERAL 415 FQEMLSNV +H+QA V I + L + V D+G G A +YGVMGMRERA Sbjct: 312 FQEMLSNVGRHAQARAVAIRIEADACQLRLSVRDDGRGAAPEAFEAATAYGVMGMRERAR 371 Query: 416 HFAGALNIEN 425 HF G + I++ Sbjct: 372 HFGGQVTIDS 381