BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4131.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001022682.1| two component LuxR family transcriptional re... 238 3e-61 ref|YP_547156.1| two component LuxR family transcriptional regul... 237 1e-60 ref|ZP_08405889.1| two component LuxR family transcriptional reg... 228 3e-58 ref|YP_524974.1| two component LuxR family transcriptional regul... 226 2e-57 emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter put... 218 4e-55 >ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 226 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 132/226 (58%), Positives = 167/226 (73%), Gaps = 12/226 (5%) Query: 1 MIRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAI-----DLVLLDI 55 MIR+++CDDH IVR+G+KQILAD DI +A E +GP+ + R A D+VLLDI Sbjct: 1 MIRVVICDDHVIVRQGIKQILADAGDIALAGEAGNGPDAMTLVRAGAAAGTPPDVVLLDI 60 Query: 56 AIPQQDGLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAI 115 A+PQ+DGLDVL+ +K E PRLPVLMLSTYP++QYA R KLGAAGYLNKS D EQ+++AI Sbjct: 61 AMPQRDGLDVLKSLKAEFPRLPVLMLSTYPDRQYAVRSLKLGAAGYLNKSADSEQMIDAI 120 Query: 116 RKAAGGGLYVSAQMAETLA----SGLAQRATA---PQRAAHESLSHREYQVFQLIAAGRS 168 R+ A G L+++ +AE LA +G+ R + HE LSHREYQVF L+AAG+S Sbjct: 121 RRVAQGKLFITPSVAEQLAGAVGAGIGSRKGGVGDDEAPLHERLSHREYQVFGLLAAGKS 180 Query: 169 VKEIADQLELSPNTVSTYRSRILEKTGASNDVGIAMYAVRHQLLPV 214 V EIA+QL LS NTVSTYR+RILEKTG NDV +A+YAVR +L+ V Sbjct: 181 VGEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQELMQV 226 >ref|YP_547156.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE42258.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 222 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 134/215 (62%), Positives = 164/215 (76%), Gaps = 9/215 (4%) Query: 2 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAI------DLVLLDI 55 ++IL+ DDHRIVREGLKQ+LAD P+IEV AE +GP++L RV+A+ D VLLDI Sbjct: 4 VKILIGDDHRIVREGLKQVLADAPEIEVVAEAETGPDILQ--RVDALGGDSGLDAVLLDI 61 Query: 56 AIPQQDGLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAI 115 A+P++DGLDVL+ +K+ PRL VLMLSTYPEKQYA RC KLGAAGYLNKS P+ ++ A+ Sbjct: 62 ALPERDGLDVLQALKKSWPRLAVLMLSTYPEKQYAVRCIKLGAAGYLNKSAHPDDMIAAV 121 Query: 116 RKAAGGGLYVSAQMAETLASGLAQRAT-APQRAAHESLSHREYQVFQLIAAGRSVKEIAD 174 RK A GG+YVSA AE LAS + AT ESLSHRE+QVF+L+ AG+SV EI Sbjct: 122 RKVATGGVYVSAIAAEALASAVGNSATKTGGGGGTESLSHREHQVFRLLTAGKSVGEIGA 181 Query: 175 QLELSPNTVSTYRSRILEKTGASNDVGIAMYAVRH 209 QL L+PNTVSTYR+RILEKTG NDV +A+YA RH Sbjct: 182 QLNLAPNTVSTYRARILEKTGTRNDVELALYAERH 216 >ref|ZP_08405889.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI77010.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 214 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 133/210 (63%), Positives = 165/210 (78%), Gaps = 8/210 (3%) Query: 1 MIRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEA--IDLVLLDIAIP 58 ++RIL+ DDHRIVREGLKQIL+D P ++V AE A+GP+VL +V A +DLVLLDIA+P Sbjct: 4 LLRILIGDDHRIVREGLKQILSDDPGVQVVAEAATGPDVLEQVQVMADRLDLVLLDIALP 63 Query: 59 QQDGLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKA 118 +DGLDVL+Q++ PRLPVLMLSTYPE+QYAARC KLGAAGYLNKS DP+ ++ A+RKA Sbjct: 64 GRDGLDVLQQLRTAHPRLPVLMLSTYPERQYAARCIKLGAAGYLNKSADPDVMLAAVRKA 123 Query: 119 AGGGLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLEL 178 A GG++V+ AE LA +A R A E+LSHRE+QVF+L+ GRSV EI QL L Sbjct: 124 AAGGVFVTPAAAEALAGAVAGRGGA------EALSHREHQVFRLLIQGRSVSEIGAQLGL 177 Query: 179 SPNTVSTYRSRILEKTGASNDVGIAMYAVR 208 +PNTVSTYR+RILEKTG NDV +A+YA R Sbjct: 178 APNTVSTYRARILEKTGTKNDVELALYAER 207 >ref|YP_524974.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD71443.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 225 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 131/220 (59%), Positives = 165/220 (75%), Gaps = 13/220 (5%) Query: 1 MIRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAI------DLVLLD 54 MI++L+ DDHRIVREGLKQ+LAD PD+ V AE ASGPEVL A+V+A+ DLVLLD Sbjct: 1 MIKVLIGDDHRIVREGLKQVLADAPDVSVLAEAASGPEVL--AQVQALGGSAGLDLVLLD 58 Query: 55 IAIPQQDGLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEA 114 IA+PQQDGL+VL+ +++ P LPVLMLSTYPEKQYA RC KLGA GYLNKS DP+ ++ A Sbjct: 59 IAMPQQDGLEVLQILRRTHPTLPVLMLSTYPEKQYAVRCIKLGAGGYLNKSADPDDMVAA 118 Query: 115 IRKAAGGGLYVS-----AQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSV 169 +RK A GG+YV+ A A ++G + A A ++LSHREYQVF+L++ G +V Sbjct: 119 VRKVAAGGMYVTPDTAEALAAAMASAGRSGAAAQAVVAGVDALSHREYQVFRLLSMGHAV 178 Query: 170 KEIADQLELSPNTVSTYRSRILEKTGASNDVGIAMYAVRH 209 EI QL+L+ NTVSTYR+RILEKTG NDV +A+YA RH Sbjct: 179 GEIGAQLKLASNTVSTYRARILEKTGTKNDVELALYAQRH 218 >emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 235 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 127/208 (61%), Positives = 152/208 (73%), Gaps = 8/208 (3%) Query: 3 RILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARV----EAIDLVLLDIAIP 58 RIL+ DDHRIVREGLKQ+LAD D+ V AE ASGPEVL + + + VLLDIA+P Sbjct: 23 RILIGDDHRIVREGLKQVLADAADLHVVAEAASGPEVLEAVQALGGNAGLSAVLLDIAMP 82 Query: 59 QQDGLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKA 118 +DGLDVL+ +K P+LPVLMLSTYPEKQYA RC KLGAAGYLNK DP+ ++ A+RK Sbjct: 83 GRDGLDVLQVLKATWPKLPVLMLSTYPEKQYAVRCIKLGAAGYLNKGADPDDMIAAVRKV 142 Query: 119 AGGGLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLEL 178 A GG+YVSAQ AE LAS E+LSHRE+QVF+L+ AG++V EI QL L Sbjct: 143 ASGGVYVSAQAAEALAS----AVANAAHQGAEALSHREHQVFRLLTAGKTVGEIGAQLGL 198 Query: 179 SPNTVSTYRSRILEKTGASNDVGIAMYA 206 + NTVSTYR RILEKTG NDV +A+YA Sbjct: 199 ASNTVSTYRQRILEKTGTKNDVELALYA 226