BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4130.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_998697.1| ABC transporter nitrate-binding protein [Vermin... 803 0.0 ref|YP_001022675.1| putative nitrate transporter component, nrtA... 686 0.0 ref|YP_547155.1| ABC transporter nitrate-binding protein [Polaro... 682 0.0 ref|ZP_07044278.1| putative nitrate transporter component, nrtA ... 681 0.0 ref|YP_001155777.1| ABC transporter nitrate-binding protein [Pol... 671 0.0 >ref|YP_998697.1| ABC transporter nitrate-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM59679.1| ABC transporter nitrate-binding protein [Verminephrobacter eiseniae EF01-2] Length = 471 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 389/471 (82%), Positives = 426/471 (90%), Gaps = 4/471 (0%) Query: 1 MPDAPETNLFHTYDAERAGQGCSCGRHGSQQQ--HEADVLAEQQRLQRGR--DVETLTND 56 MP ++ LFHT DA AG CSCG+H SQ Q H A QQ L+R R D E L+ND Sbjct: 1 MPREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSND 60 Query: 57 VVEEALMRSLFPRVAERRDFLRAVGKNAARAAIASVLPLGSLQAMAQEKNGALEKKDLKI 116 VVEE+++R+LFP+ A+RR FLRAVG N ARAAIAS+ PL +LQAMAQEKNGA+EKKDLKI Sbjct: 61 VVEESVLRALFPQAAQRRGFLRAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKI 120 Query: 117 GFIAITCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEHDASHFLSPMPIAM 176 GFIA+TCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKE+DASHFLSPMP+AM Sbjct: 121 GFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEYDASHFLSPMPLAM 180 Query: 177 SMGVGSNATQMRVATIQNINGQAITLHTKHKDKRDPKQWKGFKFAVPFEYSMHNFLLRYY 236 S+G GS+ QMR+ATIQNINGQAITLH KHKDKR+P QW GF+FAVPFEYSMHNFLLRYY Sbjct: 181 SIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYY 240 Query: 237 LAEHGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIW 296 LAE+GLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIW Sbjct: 241 LAENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIW 300 Query: 297 DGHPCCAFGTSEEFIKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPPAYLNQPET 356 DGHPCCAFG SE+F+KQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISP AYLNQPET Sbjct: 301 DGHPCCAFGMSEDFVKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPET 360 Query: 357 VVEQVLTGRFADGLGNVKNVPGRADFDPVPWDSMGVWILTQMKRWGYIKGDVDYKAIAEK 416 VVEQVLTGRFADGLGNVK VPGRADFDPVPWDSM VWIL+Q+KRWGY+KG++DYK IAE+ Sbjct: 361 VVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILSQLKRWGYVKGEIDYKGIAER 420 Query: 417 VLLLTEAKKHMKELGQPVPEGAYRKYSIMGKEFDANKADAYVNSFAIKRSA 467 VLLLT+AKK+MKELGQPVP+GAYRK+ IMGKEFD KADAYVNSFAIKR++ Sbjct: 421 VLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS 471 >ref|YP_001022675.1| putative nitrate transporter component, nrtA [Methylibium petroleiphilum PM1] gb|ABM96440.1| putative nitrate transporter component, nrtA [Methylibium petroleiphilum PM1] Length = 464 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 338/456 (74%), Positives = 384/456 (84%), Gaps = 3/456 (0%) Query: 13 YDAERAG-QGCSCGRHGSQQQHEA-DVLAEQQRLQRGRDVETLTNDVVEEALMRSLFPRV 70 YDA+R CSCGRHGS +H A D E +R D E +N VE L+++LFP+ Sbjct: 10 YDADRPLLMRCSCGRHGSAAEHAAEDASTELRRRSETADFEADSNAFVEATLVKALFPQD 69 Query: 71 AERRDFLRAVGKNAARAAIASVLPLGSLQAMAQEKNGALEKKDLKIGFIAITCAAPLIMA 130 A RR FLRAVGK A AAIASVLP+ LQA+AQ A EKKDLKIGFI ITCA PLIMA Sbjct: 70 AVRRRFLRAVGKGTAMAAIASVLPIAPLQALAQAAA-APEKKDLKIGFIPITCATPLIMA 128 Query: 131 DPLGFYRKQGLNVSLNKTAGWALIRDKMINKEHDASHFLSPMPIAMSMGVGSNATQMRVA 190 PLGFY KQGLNV + KTAGWALIRDKM+NKE+DA+HFLSPMP+A+SMGVGSNAT M VA Sbjct: 129 HPLGFYSKQGLNVQVVKTAGWALIRDKMLNKEYDATHFLSPMPLAISMGVGSNATPMNVA 188 Query: 191 TIQNINGQAITLHTKHKDKRDPKQWKGFKFAVPFEYSMHNFLLRYYLAEHGLDPDRDVQI 250 TIQN NGQAITLH KHKDKRDPK WKGFKFAVPFEYSMHNFLLRYY+AE GLDPDRD+QI Sbjct: 189 TIQNTNGQAITLHVKHKDKRDPKDWKGFKFAVPFEYSMHNFLLRYYVAEAGLDPDRDIQI 248 Query: 251 RVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFGTSEEF 310 RV PPPEMVANLRAGNIDG+LGPDPFNQRAV++EVGF+H+L+K++W+GHPCCAFGTS EF Sbjct: 249 RVVPPPEMVANLRAGNIDGYLGPDPFNQRAVFEEVGFLHLLTKDLWNGHPCCAFGTSTEF 308 Query: 311 IKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPPAYLNQPETVVEQVLTGRFADGL 370 I+QNPNTFAAL+RAVLTAAAMAR P NR L+AKVISP AYLNQPETVV QVLTGRFADGL Sbjct: 309 IQQNPNTFAALYRAVLTAAAMARKPENRELIAKVISPQAYLNQPETVVAQVLTGRFADGL 368 Query: 371 GNVKNVPGRADFDPVPWDSMGVWILTQMKRWGYIKGDVDYKAIAEKVLLLTEAKKHMKEL 430 GNV+NVP RADFDP+PW SM VW+LTQMKRWGY+KGDV+Y+ IAEKV LLT+A+K MK+L Sbjct: 369 GNVRNVPDRADFDPIPWQSMAVWMLTQMKRWGYVKGDVNYRQIAEKVFLLTDARKTMKQL 428 Query: 431 GQPVPEGAYRKYSIMGKEFDANKADAYVNSFAIKRS 466 Q VP+GAY K++IMGK FD + + Y+ SFAIKR+ Sbjct: 429 DQKVPDGAYPKFTIMGKVFDPEQPEPYLGSFAIKRT 464 >ref|YP_547155.1| ABC transporter nitrate-binding protein [Polaromonas sp. JS666] gb|ABE42257.1| ABC transporter nitrate-binding protein [Polaromonas sp. JS666] Length = 451 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 325/460 (70%), Positives = 382/460 (83%), Gaps = 12/460 (2%) Query: 7 TNLFHTYDAERAGQ-GCSCGRHGSQQQHEADVLAEQQRLQRGRDVETLTNDVVEEALMRS 65 +N F YDA+R C+CG+ + +H+A + Q+ L++ +E +L+++ Sbjct: 2 SNRFDAYDADRPLMLRCACGQDHAPGEHDAAAASAQE----------LSHSFMEASLVKA 51 Query: 66 LFPRVAERRDFLRAVGKNAARAAIASVLPLGSLQAMAQEKNGALEKKDLKIGFIAITCAA 125 LFP + RR FLRAVG N ARAAIASV P+G+LQAMAQ++ G LEKKDLKIGFIAITCA+ Sbjct: 52 LFPVDSVRRSFLRAVGANTARAAIASVFPMGALQAMAQDR-GPLEKKDLKIGFIAITCAS 110 Query: 126 PLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEHDASHFLSPMPIAMSMGVGSNAT 185 PLIMADPLGFY+K+GL+V LNKTAGWALIRDKMINKEHDASHFLSPMP+AM+MG+GSN Sbjct: 111 PLIMADPLGFYKKEGLHVQLNKTAGWALIRDKMINKEHDASHFLSPMPLAMTMGLGSNQV 170 Query: 186 QMRVATIQNINGQAITLHTKHKDKRDPKQWKGFKFAVPFEYSMHNFLLRYYLAEHGLDPD 245 M VA+IQN NGQAITLH KHK+ RDPK WKGFKFA+PFEYSMHNFLLRYYLAE+GL+PD Sbjct: 171 NMNVASIQNTNGQAITLHVKHKNNRDPKNWKGFKFAIPFEYSMHNFLLRYYLAENGLNPD 230 Query: 246 RDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFG 305 DVQ+RV PPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSK+IWDGHPCCAFG Sbjct: 231 TDVQLRVVPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKDIWDGHPCCAFG 290 Query: 306 TSEEFIKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPPAYLNQPETVVEQVLTGR 365 S+EFI++NPNTFAAL+RAVL A+ MA P +R L+AKVI+P YLNQPE V++QVLTG+ Sbjct: 291 VSDEFIQKNPNTFAALYRAVLGASFMASQPKDRDLIAKVIAPTQYLNQPEAVLQQVLTGK 350 Query: 366 FADGLGNVKNVPGRADFDPVPWDSMGVWILTQMKRWGYIKGDVDYKAIAEKVLLLTEAKK 425 FADGLGN+KNVP RA+FDPVPW SM VW+LTQMKRWGY+KGDV+Y+ IAEKV LLTEAKK Sbjct: 351 FADGLGNIKNVPDRANFDPVPWQSMAVWMLTQMKRWGYVKGDVNYRQIAEKVFLLTEAKK 410 Query: 426 HMKELGQPVPEGAYRKYSIMGKEFDANKADAYVNSFAIKR 465 M G PEGAY+K+ +MGKEFD K + YV SFAI + Sbjct: 411 QMSLAGFKPPEGAYKKFKVMGKEFDPAKPEDYVKSFAINK 450 >ref|ZP_07044278.1| putative nitrate transporter component, nrtA [Comamonas testosteroni S44] gb|EFI62028.1| putative nitrate transporter component, nrtA [Comamonas testosteroni S44] Length = 465 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 328/463 (70%), Positives = 384/463 (82%), Gaps = 7/463 (1%) Query: 10 FHTYDAERA-GQGCSCGRHGSQQQHEA----DVLAEQQRLQRGRDVETLTNDVVEEALMR 64 F +DAE+ CSCGRHGS+ +H+A D E R + E +N+ +E +L++ Sbjct: 4 FAPFDAEKPLMMSCSCGRHGSESEHKAASAHDAAQELIRRSQTNSFEQYSNEFIEASLVK 63 Query: 65 SLFPRVAERRDFLRAVGKNAARAAIASVLPLGSLQAMAQEKNGALEKKDLKIGFIAITCA 124 ++FP+ A RR FLRAVGK+ A AAI+SVLPL SLQAMAQ+K GA+EKK LK+GFI ITCA Sbjct: 64 AIFPQDAVRRHFLRAVGKSTAMAAISSVLPLTSLQAMAQDK-GAIEKKSLKVGFIPITCA 122 Query: 125 APLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEHDASHFLSPMPIAMSMGVGSNA 184 PLIMA+PLGFY KQGL+V + KTAGWAL+RDK++NKE+DASHFLSPMP+A+SMG+GSNA Sbjct: 123 TPLIMAEPLGFYSKQGLDVQIVKTAGWALVRDKVMNKEYDASHFLSPMPLAISMGLGSNA 182 Query: 185 TQMRVATIQNINGQAITLHTKHKDKRDPKQWKGFKFAVPFEYSMHNFLLRYYLAEHGLDP 244 M VATIQN+NGQAITL KHK RDPK WKGFKFA+PFEYSMHNFLLRYYLAE GLDP Sbjct: 183 QPMNVATIQNVNGQAITLALKHKGNRDPKNWKGFKFAIPFEYSMHNFLLRYYLAEAGLDP 242 Query: 245 DRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAF 304 DRDVQ+RV PP EMVANLRAGNIDGFLGPDPFNQRAV +EVGFIHIL+++IW+GHPCCAF Sbjct: 243 DRDVQLRVVPPAEMVANLRAGNIDGFLGPDPFNQRAVVEEVGFIHILTRDIWNGHPCCAF 302 Query: 305 GTSEEFIKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPPAYLNQPETVVEQVLTG 364 GTS EFI++NPNTFAAL+R+VLT+AAMARD NR L+AKVIS AYLNQPE VV QVLTG Sbjct: 303 GTSTEFIQKNPNTFAALYRSVLTSAAMARDAKNRELIAKVISTQAYLNQPEAVVTQVLTG 362 Query: 365 RFADGLGNVKNVPGRADFDPVPWDSMGVWILTQMKRWGYIKGDVDYKAIAEKVLLLTEAK 424 R+ADGLGNV N P R DFDP+PW SM VW+LTQMKRWGYIKGDV+YK +AEKV LLT+AK Sbjct: 363 RYADGLGNVINNPARVDFDPIPWQSMAVWMLTQMKRWGYIKGDVNYKQLAEKVFLLTDAK 422 Query: 425 KHMKELGQPVPE-GAYRKYSIMGKEFDANKADAYVNSFAIKRS 466 + MK+LGQ VP+ AY Y IMGK FD +KADAY NSF IK++ Sbjct: 423 QTMKQLGQGVPDTTAYPSYQIMGKTFDPSKADAYANSFTIKKA 465 >ref|YP_001155777.1| ABC transporter nitrate-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34213.1| ABC transporter nitrate-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 457 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 325/464 (70%), Positives = 377/464 (81%), Gaps = 13/464 (2%) Query: 8 NLFHTYDAERA--GQGCSCGRHGSQQQHEADVLAEQQRLQRGRDVETLTNDVVEEALMRS 65 N + +D +R CSCG+H S+ H L D E + D VE +L+++ Sbjct: 2 NSYRPFDPDRPLFSNRCSCGQHASELDH-------ANSLSAMVDAEQQSADFVEASLVKA 54 Query: 66 LFPRVAERRDFLRAVGKNAARAAIASVLPLGSLQAMAQEKNGALEKKDLKIGFIAITCAA 125 LFP+ RR FL+AVG A +A++ LP+GSLQAMAQEK LEK DLKIGFIAITCA Sbjct: 55 LFPQEDRRRAFLKAVGVGGAMSALSGFLPVGSLQAMAQEK-APLEKPDLKIGFIAITCAT 113 Query: 126 PLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEHDASHFLSPMPIAMSMGVGSNAT 185 PLIMADPLGFY+KQGL V+LNKTAGWALIRDKM+NKEHDASHFLSPMPI+MSMG+GS+ + Sbjct: 114 PLIMADPLGFYKKQGLKVTLNKTAGWALIRDKMLNKEHDASHFLSPMPISMSMGLGSDPS 173 Query: 186 QMRVATIQNINGQAITLHTKHKDKRDPKQWKGFKFAVPFEYSMHNFLLRYYLAEHGLDPD 245 QMRVATIQN+NGQAITL KHKD RDPK WKG KFAVPFEYSMHNFLLRYY+A+ GLDPD Sbjct: 174 QMRVATIQNVNGQAITLANKHKDNRDPKNWKGMKFAVPFEYSMHNFLLRYYVAQAGLDPD 233 Query: 246 RDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFG 305 +D+QIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHIL+K+IWDGHPCCAFG Sbjct: 234 KDIQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILTKQIWDGHPCCAFG 293 Query: 306 TSEEFIKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPPAYLNQPETVVEQVLTGR 365 TSEEFI++NPNTFAAL+RAVL A+ MARDPANR L+AKVIS P YLNQPETVV QVLTG+ Sbjct: 294 TSEEFIRKNPNTFAALYRAVLNASTMARDPANRPLIAKVISTPNYLNQPETVVMQVLTGK 353 Query: 366 FADGLGNVKNVPGRADFDPVPWDSMGVWILTQMKRWGYIKGDVDYKAIAEKVLLLTEAKK 425 FADGLGNV+NVP R DF+P+PW SM W+LTQM+RWGY+KGDV+YK I+EKV LLT+AKK Sbjct: 354 FADGLGNVQNVPDRIDFNPIPWYSMATWMLTQMQRWGYVKGDVNYKDISEKVFLLTDAKK 413 Query: 426 HMKELGQPVPEGA---YRKYSIMGKEFDANKADAYVNSFAIKRS 466 +M E G VP A Y+K IMGKEFD ++ AY+ SF ++ Sbjct: 414 YMGETGIAVPPLAKVGYKKDKIMGKEFDPSQPAAYLKSFQTNKA 457