BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4129.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_998698.1| nitrate ABC transporter inner membrane subunit ... 446 e-123 ref|YP_547154.1| nitrate transport permease [Polaromonas sp. JS6... 381 e-104 ref|YP_001022674.1| nitrate ABC transporter permease [Methylibiu... 380 e-103 emb|CBA30622.1| Nitrate transport permease protein nrtB [Curviba... 377 e-102 ref|ZP_08405887.1| nitrate ABC transporter, inner membrane subun... 373 e-101 >ref|YP_998698.1| nitrate ABC transporter inner membrane subunit [Verminephrobacter eiseniae EF01-2] gb|ABM59680.1| nitrate ABC transporter, inner membrane subunit [Verminephrobacter eiseniae EF01-2] Length = 295 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 246/295 (83%), Positives = 263/295 (89%), Gaps = 12/295 (4%) Query: 1 MKPAAQPGWRAAMISLALFGCLLMVWHLATLPKESAASAA-----------QDEYARLMG 49 M PAAQ GWR +ISL +FGCLL+VWHLAT P +S ASA +DEYA+LMG Sbjct: 1 MTPAAQLGWRTGLISLVIFGCLLLVWHLATAPGQSVASAGAGAASAATSAAEDEYAKLMG 60 Query: 50 K-SSGAAKRDGFPGLAQMGETIRKELSNPFYDNGPNDKGIGIQLAYSLGRVGLGFAIAAV 108 K SS K GFPGLAQMG+TIRKEL++PFYDNGPNDKGIGIQL YSL RVGLGFAIAAV Sbjct: 61 KGSSSPVKTSGFPGLAQMGQTIRKELAHPFYDNGPNDKGIGIQLGYSLARVGLGFAIAAV 120 Query: 109 VAVPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSVSGVFVIFICSVWP 168 VA+PLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSS+SG+FVIFICSVWP Sbjct: 121 VAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWP 180 Query: 169 MLMNTAFGVASVRRDWLNVAKTLEVSPLRRAFLVILPAAAPTILTGMRISMGIAWLVIVA 228 MLMNTAFGVASVRRDWLN AKTLEV PLR+AFLVILPAAAPTILTGMRISMGIAWLVIVA Sbjct: 181 MLMNTAFGVASVRRDWLNAAKTLEVKPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVA 240 Query: 229 AEMLVGGTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVLDLIFARLQKWVTYVE 283 AEMLVGGTGIGY+VWNEWNNLSLTSVIFAIL+IGVTGM+LDL+FARLQK VTY E Sbjct: 241 AEMLVGGTGIGYYVWNEWNNLSLTSVIFAILLIGVTGMLLDLVFARLQKLVTYTE 295 >ref|YP_547154.1| nitrate transport permease [Polaromonas sp. JS666] gb|ABE42256.1| nitrate transport permease [Polaromonas sp. JS666] Length = 287 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 205/281 (72%), Positives = 237/281 (84%), Gaps = 7/281 (2%) Query: 10 RAAMISLALFGCLLMVWHLATLPK-------ESAASAAQDEYARLMGKSSGAAKRDGFPG 62 +A ++SL +F L +W+ ATLP + SA Q EY ++MGK G+ K GFP Sbjct: 7 KAGLVSLLIFLAFLGIWYTATLPSPGTPVASTAGLSAEQIEYQKMMGKDPGSTKTTGFPT 66 Query: 63 LAQMGETIRKELSNPFYDNGPNDKGIGIQLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPL 122 L QMG I K++SNP YDNGPNDKGI IQL +SL RVGLGF +A VAVPLGF++GMSPL Sbjct: 67 LGQMGAAIWKQVSNPLYDNGPNDKGILIQLGHSLARVGLGFLLACAVAVPLGFVIGMSPL 126 Query: 123 MQRALNPFIQILKPISPLAWMPLALYTIKDSSVSGVFVIFICSVWPMLMNTAFGVASVRR 182 ++RA +PFIQ+LKPISPLAWMPLALYTIKDSS+SG+FVIFICSVWPML+NTAFGV++V+R Sbjct: 127 LRRAFDPFIQVLKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLINTAFGVSAVKR 186 Query: 183 DWLNVAKTLEVSPLRRAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFV 242 +WLNVA TLEVSPLR+AFLVILPAAAPTI TGMRISMGIAWLVIVAAEMLVGGTGIGYFV Sbjct: 187 EWLNVASTLEVSPLRKAFLVILPAAAPTIFTGMRISMGIAWLVIVAAEMLVGGTGIGYFV 246 Query: 243 WNEWNNLSLTSVIFAILVIGVTGMVLDLIFARLQKWVTYVE 283 WNEWNNLSLT+VIFAILVIG+ GM+LDL FA+LQK VTYVE Sbjct: 247 WNEWNNLSLTNVIFAILVIGIVGMLLDLSFAQLQKMVTYVE 287 >ref|YP_001022674.1| nitrate ABC transporter permease [Methylibium petroleiphilum PM1] gb|ABM96439.1| nitrate ABC transporter permease protein [Methylibium petroleiphilum PM1] Length = 295 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 208/271 (76%), Positives = 232/271 (85%), Gaps = 12/271 (4%) Query: 25 VWHLAT-------LPKESAASAAQDEYARLMGKSSGA-----AKRDGFPGLAQMGETIRK 72 VW LAT + + Q EYARL+GK GA A R GFP AQ+G + + Sbjct: 25 VWQLATRPAAGSAAAPAATMTPEQIEYARLLGKEPGAEAGSTAGRSGFPTPAQLGSKMVE 84 Query: 73 ELSNPFYDNGPNDKGIGIQLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQ 132 LS PFYDNGPNDKGIG+QLAYSLGRVGLGFA+AA+VA+PLGFL+GMSPL+ RAL+PFIQ Sbjct: 85 HLSRPFYDNGPNDKGIGLQLAYSLGRVGLGFALAALVAIPLGFLIGMSPLVYRALDPFIQ 144 Query: 133 ILKPISPLAWMPLALYTIKDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLE 192 +LKPISPLAWMPLALYTIKDSS+SG+FVIFICSVWPML+NTAFGVA VRR+WLNVA+TLE Sbjct: 145 VLKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLINTAFGVAGVRREWLNVARTLE 204 Query: 193 VSPLRRAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT 252 VSPLR+AF VILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT Sbjct: 205 VSPLRKAFEVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT 264 Query: 253 SVIFAILVIGVTGMVLDLIFARLQKWVTYVE 283 +VIFAILVIGV GM+LDL+FAR QK VTYV+ Sbjct: 265 NVIFAILVIGVVGMLLDLLFARAQKAVTYVD 295 >emb|CBA30622.1| Nitrate transport permease protein nrtB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 287 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 198/263 (75%), Positives = 227/263 (86%), Gaps = 4/263 (1%) Query: 25 VWHLATLPKESAA----SAAQDEYARLMGKSSGAAKRDGFPGLAQMGETIRKELSNPFYD 80 +W +AT +A+ SA Q EY +++GK G K+ GFP QMG TI K L++PFYD Sbjct: 25 IWQVATHSSGAASASNLSAEQIEYLKMLGKDPGTQKQGGFPTPVQMGSTIWKHLADPFYD 84 Query: 81 NGPNDKGIGIQLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQILKPISPL 140 GPNDKGI IQL +SL RVGLGF +A VVA+PLGF++GMSPL+ +AL+PFIQILKPISPL Sbjct: 85 KGPNDKGIAIQLGHSLARVGLGFLLACVVAIPLGFVIGMSPLLHKALDPFIQILKPISPL 144 Query: 141 AWMPLALYTIKDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVSPLRRAF 200 AWMPLALYTIKDSS SG+FVIFICSVWPML+NTAFGVASV+R+WLNVA+TLEV PLR+AF Sbjct: 145 AWMPLALYTIKDSSASGIFVIFICSVWPMLINTAFGVASVKREWLNVARTLEVKPLRKAF 204 Query: 201 LVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIFAILV 260 VILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT+V+FAI V Sbjct: 205 QVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTNVLFAIGV 264 Query: 261 IGVTGMVLDLIFARLQKWVTYVE 283 IGV GM+LDL+FARLQKWVTY + Sbjct: 265 IGVMGMLLDLVFARLQKWVTYAD 287 >ref|ZP_08405887.1| nitrate ABC transporter, inner membrane subunit [Hylemonella gracilis ATCC 19624] gb|EGI77008.1| nitrate ABC transporter, inner membrane subunit [Hylemonella gracilis ATCC 19624] Length = 305 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 203/272 (74%), Positives = 230/272 (84%), Gaps = 13/272 (4%) Query: 25 VWHLATLPKESAASAAQD------EYARLMGKS-------SGAAKRDGFPGLAQMGETIR 71 VWH+AT+P SAA A + EY ++MGK S + K+ GFP A+ T Sbjct: 34 VWHVATVPVASAAGGAANLTPEEIEYLKMMGKDPGAAAGASASGKQGGFPAPAEFARTAW 93 Query: 72 KELSNPFYDNGPNDKGIGIQLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFI 131 K LSNPFYDNGPNDKGI IQL +SL RVGLGF +A +VAVPLGF++GMSPL++RAL+P+I Sbjct: 94 KHLSNPFYDNGPNDKGIAIQLGHSLARVGLGFLLACLVAVPLGFVIGMSPLLRRALDPYI 153 Query: 132 QILKPISPLAWMPLALYTIKDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTL 191 Q+LKPISPLAWMPLALYTIKDSS SG+FVIFICSVWPML+NTAFGVA+VRRDWLNVA TL Sbjct: 154 QVLKPISPLAWMPLALYTIKDSSASGIFVIFICSVWPMLINTAFGVAAVRRDWLNVAATL 213 Query: 192 EVSPLRRAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSL 251 EVSPLR+AFLVILPAAAPTI+TGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSL Sbjct: 214 EVSPLRKAFLVILPAAAPTIVTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSL 273 Query: 252 TSVIFAILVIGVTGMVLDLIFARLQKWVTYVE 283 ++VIFAI VIGV GM+LDL+F RLQK VTYVE Sbjct: 274 SNVIFAITVIGVVGMLLDLLFGRLQKAVTYVE 305