BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4124.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776703.1| TRAP-type uncharacterized transport system p... 820 0.0 ref|YP_004752508.1| hypothetical protein CFU_1853 [Collimonas fu... 601 e-170 ref|YP_003905821.1| hypothetical protein BC1003_0527 [Burkholder... 527 e-147 ref|YP_001894445.1| hypothetical protein Bphyt_0798 [Burkholderi... 524 e-146 ref|ZP_06843044.1| conserved hypothetical protein [Burkholderia ... 524 e-146 >ref|YP_003776703.1| TRAP-type uncharacterized transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64795.1| TRAP-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 424/463 (91%), Positives = 449/463 (96%) Query: 1 MLKDKKLSAYAPSATRIRARFVAISWRDLAVSFGPIILLILIGAWLVIWLIRPAPPSSIT 60 MLKDKKLSAYAPSATRIRARFVAISWRDLAVSFGPIILLIL+GAWLVIWLIRPAPPSSIT Sbjct: 1 MLKDKKLSAYAPSATRIRARFVAISWRDLAVSFGPIILLILVGAWLVIWLIRPAPPSSIT 60 Query: 61 IAAGPKDSNFWRVAERYKALLARDGIRLDIVETGGSLDNLKRLADPDQNVDVGFVQGGLA 120 IAAGPKDSNFWRVAERYK +LARDGI+LDIVETGGSLDNLKRL D DQ++DVGFVQGGLA Sbjct: 61 IAAGPKDSNFWRVAERYKTILARDGIKLDIVETGGSLDNLKRLVDSDQDIDVGFVQGGLA 120 Query: 121 GAVPAESLSPLVSLGSISYVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGEGSG 180 GAVPA+++ LVSLGSISYVPVSVYYR+ +G+P+PPLRQLSELAGKRIAIGG+GSG Sbjct: 121 GAVPADAMGSLVSLGSISYVPVSVYYRSASINAEGKPIPPLRQLSELAGKRIAIGGQGSG 180 Query: 181 SSVLAATLLKANGVESGGSTQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRA 240 SSVLAATLLKANGVE+GG+TQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRA Sbjct: 181 SSVLAATLLKANGVEAGGATQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRA 240 Query: 241 PGIRLLDFSQADAYVRRFRYLNTLKMPMGVFDLAHNLPARDTQLIAPTAELVAREDLHPA 300 PG+RLLDFSQA+AYVRRFRYLNTLKMPMGVFDLA NLPARDTQLIAPTAELVAREDLHPA Sbjct: 241 PGVRLLDFSQAEAYVRRFRYLNTLKMPMGVFDLARNLPARDTQLIAPTAELVAREDLHPA 300 Query: 301 LSDLLIAAAREVHGKANVMQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMAS 360 LSDLLI AA EVHGKANVMQKAGEFPAPLEHEY ISDDAARYYKSGKTFFYRTLPFW+AS Sbjct: 301 LSDLLIEAAHEVHGKANVMQKAGEFPAPLEHEYRISDDAARYYKSGKTFFYRTLPFWLAS 360 Query: 361 LVDRAVVIVLPVILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALERGLSRESPEEQAEM 420 L+DRAVVIVLPVILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALERG+SR+SP+EQA++ Sbjct: 361 LLDRAVVIVLPVILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALERGISRDSPQEQADI 420 Query: 421 LKRLDEIEIAVNRMKMPLAFADQFYVLREHIGFVRARLAAGVA 463 LKRLDEIE+AVNRMKMPLAFADQFYVLREHIGFVRARLAAGVA Sbjct: 421 LKRLDEIEMAVNRMKMPLAFADQFYVLREHIGFVRARLAAGVA 463 >ref|YP_004752508.1| hypothetical protein CFU_1853 [Collimonas fungivorans Ter331] gb|AEK61685.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 476 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 312/448 (69%), Positives = 370/448 (82%), Gaps = 14/448 (3%) Query: 13 SATRIRARFVAISWRDLAVSFGPIILLILIGAWLVIWLIRPAPPSSITIAAGPKDSNFWR 72 SA I+ARFVAISWRDLA+SFGPI LL+++ WL IW I PAPP+SIT+ GP+ SNFW Sbjct: 37 SARNIKARFVAISWRDLAISFGPIALLVVVAIWLAIWFIHPAPPNSITMITGPEHSNFWN 96 Query: 73 VAERYKALLARDGIRLDIVETGGSLDNLKRLADPDQNVDVGFVQGGLAGAVPAESLSPLV 132 A++Y+ +LAR+GI+L IV + GSLDNLK+L DP+ +DVGFVQGG+AG +P + L V Sbjct: 97 TAQKYQKILARNGIKLKIVTSEGSLDNLKKLNDPNSGIDVGFVQGGVAGDLPIDQL---V 153 Query: 133 SLGSISYVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGEGSGSSVLAATLLKAN 192 SLGS+SYVPVSV+YR L +LSELAGKR+AIG +GSGS VLA TLLKAN Sbjct: 154 SLGSVSYVPVSVFYRGKER---------LNRLSELAGKRVAIGMQGSGSRVLALTLLKAN 204 Query: 193 GVESGGSTQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQAD 252 G+E+GG T+LL++GGDEAAQALT KIDAAFLMGDS S TMG+LL PGIRLLDFSQA Sbjct: 205 GIEAGGKTELLDMGGDEAAQALTDSKIDAAFLMGDSASPPTMGRLLHTPGIRLLDFSQAG 264 Query: 253 AYVRRFRYLNTLKMPMGVFDLAHNLPARDTQLIAPTAELVAREDLHPALSDLLIAAAREV 312 AY RRF YLN L MP GVFDL N+P+RD +LIAPTAEL+AREDLHPALSDLLI AA+EV Sbjct: 265 AYARRFSYLNELNMPKGVFDLGQNIPSRDIRLIAPTAELIAREDLHPALSDLLIDAAKEV 324 Query: 313 HGKANVMQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMASLVDRAVVIVLPV 372 H NV+Q+AGEFPAPL HE+ ISDDA RYYKSGK FFYRTLPFW+ASLVDR +V++LP+ Sbjct: 325 HSGPNVLQRAGEFPAPLAHEFRISDDATRYYKSGKGFFYRTLPFWLASLVDRTLVVLLPI 384 Query: 373 ILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALERG--LSRESPEEQAEMLKRLDEIEIA 430 ILLLIPG +LVP+LYGWR++SRIYRWYG LIALER + ++PE+QA++LK+LD IE + Sbjct: 385 ILLLIPGFKLVPLLYGWRIKSRIYRWYGILIALERAAVVDTDTPEQQAQLLKKLDHIEDS 444 Query: 431 VNRMKMPLAFADQFYVLREHIGFVRARL 458 VNRMKMPLAFADQFYVLREHIGFVR+RL Sbjct: 445 VNRMKMPLAFADQFYVLREHIGFVRSRL 472 >ref|YP_003905821.1| hypothetical protein BC1003_0527 [Burkholderia sp. CCGE1003] gb|ADN56530.1| hypothetical protein BC1003_0527 [Burkholderia sp. CCGE1003] Length = 535 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 278/449 (61%), Positives = 350/449 (77%), Gaps = 14/449 (3%) Query: 11 APSATRIRARFVAISWRDLAVSFGPIILLILIGAWLVIWLIRPAPPSSITIAAGPKDSNF 70 A TR+ ARFVAISWRDLAVSFGPI+L+ + W+ + LI+PAPPS++TI+AGP+ S F Sbjct: 10 ATRPTRLVARFVAISWRDLAVSFGPILLIAVAAIWVAVRLIQPAPPSTLTISAGPQGSTF 69 Query: 71 WRVAERYKALLARDGIRLDIVETGGSLDNLKRLADPDQNVDVGFVQGGLAGAVPAESLSP 130 W A++YK +LAR+ I L+++ + GSL NL+RL+DP+ NVDV FVQ G+A P + + Sbjct: 70 WNAAQKYKEILARNRITLNVLPSEGSLQNLQRLSDPNSNVDVAFVQDGIA---PGAASNG 126 Query: 131 LVSLGSISYVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGEGSGSSVLAATLLK 190 L+SLGS+SYVP++++Y P + +LSE G+R+A+G EGSG+ LA LLK Sbjct: 127 LMSLGSVSYVPLAIFYHGPT----------VTRLSEFKGQRLAVGAEGSGTRQLALALLK 176 Query: 191 ANGVESGGSTQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQ 250 ANG+E GG+T+LL + GD+AAQAL SGK+DAAFL GDS A MGKL R P ++ DF+Q Sbjct: 177 ANGIEPGGATRLLPLSGDDAAQALVSGKVDAAFLAGDSAQPAVMGKLYRTPNVQFYDFTQ 236 Query: 251 ADAYVRRFRYLNTLKMPMGVFDLAHNLPARDTQLIAPTAELVAREDLHPALSDLLIAAAR 310 ADAY RRF YL L++PMG FDL NLP+ ++APTAELVAR LHPALSDLLI AAR Sbjct: 237 ADAYTRRFPYLTQLELPMGAFDLGKNLPSMPIHMVAPTAELVARNSLHPALSDLLIEAAR 296 Query: 311 EVHGKANVMQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMASLVDRAVVIVL 370 EVHGKAN+MQ+AGEFPAPL H++PISDDAARYYKSGK+F YR LPFW+ASL DR +V+V+ Sbjct: 297 EVHGKANIMQRAGEFPAPLAHDFPISDDAARYYKSGKSFLYRLLPFWLASLADRLLVVVV 356 Query: 371 PVILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALER-GLSRESPEEQAEMLKRLDEIEI 429 P+++LLIP +RLVP LY WRV+SRIYRWYG LIA+ER LS S E+A + +RLD IE Sbjct: 357 PLVVLLIPALRLVPSLYAWRVKSRIYRWYGALIAIERSALSDHSAAERASLRQRLDAIED 416 Query: 430 AVNRMKMPLAFADQFYVLREHIGFVRARL 458 +VN +KMPLA+ADQFYVLREHIGFVRARL Sbjct: 417 SVNGLKMPLAYADQFYVLREHIGFVRARL 445 >ref|YP_001894445.1| hypothetical protein Bphyt_0798 [Burkholderia phytofirmans PsJN] gb|ACD15221.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 497 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 278/447 (62%), Positives = 349/447 (78%), Gaps = 14/447 (3%) Query: 13 SATRIRARFVAISWRDLAVSFGPIILLILIGAWLVIWLIRPAPPSSITIAAGPKDSNFWR 72 S R+ ARFVAISWRDLAVSFGPI+L++ + W+ + LI+PAPPS++TI+AGP+ S FW Sbjct: 9 SPPRLVARFVAISWRDLAVSFGPILLIVAVAIWVAVRLIQPAPPSTLTISAGPEGSTFWN 68 Query: 73 VAERYKALLARDGIRLDIVETGGSLDNLKRLADPDQNVDVGFVQGGLAGAVPAESLSPLV 132 A++YK +LAR+ I L ++ + GSL NLKRL+DP +VDVGFVQ G+A P + L+ Sbjct: 69 AAQKYKEILARNRITLKVLPSEGSLQNLKRLSDPKSDVDVGFVQDGVA---PGPAAEGLM 125 Query: 133 SLGSISYVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGEGSGSSVLAATLLKAN 192 SLGS++YVP++++Y P + +LSE G+R+A+G EGSG+ LA LLKAN Sbjct: 126 SLGSVAYVPLAIFYHGPT----------VTRLSEFKGERLAVGAEGSGTRELALALLKAN 175 Query: 193 GVESGGSTQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQAD 252 G+ GG+T+LL + GD+AAQAL SGK+DAAFL GDS A MGKL R P ++ DFSQAD Sbjct: 176 GIVPGGATKLLPLSGDDAAQALVSGKVDAAFLAGDSAQPAVMGKLYRTPNVQFYDFSQAD 235 Query: 253 AYVRRFRYLNTLKMPMGVFDLAHNLPARDTQLIAPTAELVAREDLHPALSDLLIAAAREV 312 AY RRF YL L+MPMG FDL NLP+ ++APTAELVAR+ LHPALSDLLI AAREV Sbjct: 236 AYTRRFPYLTQLEMPMGAFDLGKNLPSAPIHMVAPTAELVARDSLHPALSDLLIEAAREV 295 Query: 313 HGKANVMQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMASLVDRAVVIVLPV 372 HGKAN+MQ+AGEFPAPL H++PISDDAARYYKSGK+F YR LPFW+ASL DR +V+V+P+ Sbjct: 296 HGKANIMQRAGEFPAPLAHDFPISDDAARYYKSGKSFLYRILPFWLASLADRLLVVVVPL 355 Query: 373 ILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALER-GLSRESPEEQAEMLKRLDEIEIAV 431 I+LL+P +RLVP LY WRV+SRIYRWYG LIA+ER LS SP E+A +++RLD IE +V Sbjct: 356 IVLLVPALRLVPSLYAWRVKSRIYRWYGALIAIERSALSDHSPSERASLIERLDAIEESV 415 Query: 432 NRMKMPLAFADQFYVLREHIGFVRARL 458 N +KMPLA+ADQFYVLREHIGFVR RL Sbjct: 416 NGLKMPLAYADQFYVLREHIGFVRQRL 442 >ref|ZP_06843044.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] gb|EFG69237.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] Length = 498 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 277/447 (61%), Positives = 347/447 (77%), Gaps = 14/447 (3%) Query: 13 SATRIRARFVAISWRDLAVSFGPIILLILIGAWLVIWLIRPAPPSSITIAAGPKDSNFWR 72 S R+ ARFVAISWRDLAVSFGPI+L+ + W+ + LI+PAPP+++TI+AGP+ S FW Sbjct: 9 SPPRLVARFVAISWRDLAVSFGPILLIAAVAIWVAVRLIQPAPPNTLTISAGPEGSTFWN 68 Query: 73 VAERYKALLARDGIRLDIVETGGSLDNLKRLADPDQNVDVGFVQGGLAGAVPAESLSPLV 132 A++YK +LAR+ I L+++ + GSL NLKRL+DP NVDVGFVQ G+A P + L+ Sbjct: 69 AAQKYKEILARNRITLNVLSSEGSLQNLKRLSDPTSNVDVGFVQDGVA---PGPAAEGLM 125 Query: 133 SLGSISYVPVSVYYRAPPPREDGRPVPPLRQLSELAGKRIAIGGEGSGSSVLAATLLKAN 192 SLGS++YVP++++Y P + +LSE G+R+A+G EGSG+ LA LLKAN Sbjct: 126 SLGSVAYVPLAIFYHGPT----------VTRLSEFKGERLAVGAEGSGTRELALALLKAN 175 Query: 193 GVESGGSTQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGIRLLDFSQAD 252 G+ GG+T+LL + GD+AA AL SGK+DAAFL GDS A MGKL R P ++ DFSQAD Sbjct: 176 GIVPGGATRLLPLSGDDAADALVSGKVDAAFLAGDSAQPAVMGKLYRTPNVQFYDFSQAD 235 Query: 253 AYVRRFRYLNTLKMPMGVFDLAHNLPARDTQLIAPTAELVAREDLHPALSDLLIAAAREV 312 AY RRF YL L MPMG FDL NLP+ ++APTAELVAR+ LHPALSDLLI AAREV Sbjct: 236 AYTRRFPYLTQLTMPMGAFDLGKNLPSAPIHMVAPTAELVARDSLHPALSDLLIEAAREV 295 Query: 313 HGKANVMQKAGEFPAPLEHEYPISDDAARYYKSGKTFFYRTLPFWMASLVDRAVVIVLPV 372 HGKAN++Q+AGEFPAPL H++PISDDAARYYKSGK+F YR LPFW+ASL DR +V+V+P+ Sbjct: 296 HGKANILQRAGEFPAPLAHDFPISDDAARYYKSGKSFLYRILPFWLASLADRLLVVVVPL 355 Query: 373 ILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALER-GLSRESPEEQAEMLKRLDEIEIAV 431 I+LL+P +RLVP LY WRV+SRIYRWYG LIA+ER LS SP E+A +L+RLD IE +V Sbjct: 356 IVLLVPALRLVPSLYAWRVKSRIYRWYGALIAIERSALSDHSPTERASLLERLDAIEESV 415 Query: 432 NRMKMPLAFADQFYVLREHIGFVRARL 458 N +KMPLA+ADQFYVLREHIGFVR RL Sbjct: 416 NGLKMPLAYADQFYVLREHIGFVRQRL 442