BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4120.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774177.1| hypothetical protein Hsero_0750 [Herbaspiril...   166   9e-40
ref|YP_001914852.1| hypothetical protein PXO_02056 [Xanthomonas ...    68   4e-10
ref|YP_001914393.1| hypothetical protein PXO_01528 [Xanthomonas ...    68   5e-10
ref|YP_202107.1| hypothetical protein XOO3468 [Xanthomonas oryza...    68   5e-10
ref|YP_452313.1| hypothetical protein XOO_3284 [Xanthomonas oryz...    68   5e-10

>ref|YP_003774177.1| hypothetical protein Hsero_0750 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62269.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 1070

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/105 (68%), Positives = 87/105 (82%)

Query: 7   QTTTSGDLVKKNADVAQKCALGSDGKCGFCQRTGYPILPLRYAIKPSFVGNASARLETLA 66
           ++TT    ++ NA+ AQKCALGS+G+C FCQRTGYPILPLRYA+KPS+V    A  ++L 
Sbjct: 9   KSTTGAATMRANANSAQKCALGSNGQCSFCQRTGYPILPLRYAVKPSYVTAIGAGPQSLP 68

Query: 67  QMEKFSAQPLKANRYTLRVLRKGYLHVYLGVTGHWQCYVVTDDGY 111
           QM+KF+AQPLK NRYTLRVLRKGY+HVY+GV GHWQ Y VTDDGY
Sbjct: 69  QMDKFAAQPLKGNRYTLRVLRKGYVHVYMGVKGHWQTYAVTDDGY 113


>ref|YP_001914852.1| hypothetical protein PXO_02056 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gb|ACD60320.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 953

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 33  CGFCQRTGYPILPLRYAIKPSFVGNASARLETLAQMEKFSAQ-----PLKANRYTLRVLR 87
           C FC + G PILPLRYA+  + +G+A A        EK   +     P     YTLR+LR
Sbjct: 13  CQFCNKQGLPILPLRYAVARNGMGDAPAVTAPFVVAEKEQKKEDFSLPDDIASYTLRLLR 72

Query: 88  KGYLHVYLGVTGHWQCYVVTDDGY 111
           +GYL+VY  +   W  YVVT  GY
Sbjct: 73  EGYLYVYDELRKEWSAYVVTSGGY 96


>ref|YP_001914393.1| hypothetical protein PXO_01528 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gb|ACD59861.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 870

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 33  CGFCQRTGYPILPLRYAIKPSFVGNASARLETLAQMEKFSAQ-----PLKANRYTLRVLR 87
           C FC + G PILPLRYA+  + +G+A A        EK   +     P     YTLR+LR
Sbjct: 13  CQFCNKQGLPILPLRYAVARNGMGDAPAVTAPFVVAEKEQKKEDFSLPDDIASYTLRLLR 72

Query: 88  KGYLHVYLGVTGHWQCYVVTDDGY 111
           +GYL+VY  +   W  YVVT  GY
Sbjct: 73  EGYLYVYDELRKEWSAYVVTSGGY 96


>ref|YP_202107.1| hypothetical protein XOO3468 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gb|AAW76722.1| hypothetical protein XOO3468 [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 955

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 33  CGFCQRTGYPILPLRYAIKPSFVGNASARLETLAQMEKFSAQ-----PLKANRYTLRVLR 87
           C FC + G PILPLRYA+  + +G+A A        EK   +     P     YTLR+LR
Sbjct: 13  CQFCNKQGLPILPLRYAVARNGMGDAPAVTAPFVVAEKEQKKEDFSLPDDIASYTLRLLR 72

Query: 88  KGYLHVYLGVTGHWQCYVVTDDGY 111
           +GYL+VY  +   W  YVVT  GY
Sbjct: 73  EGYLYVYDELRKEWSAYVVTSGGY 96


>ref|YP_452313.1| hypothetical protein XOO_3284 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 dbj|BAE70039.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 955

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 33  CGFCQRTGYPILPLRYAIKPSFVGNASARLETLAQMEKFSAQ-----PLKANRYTLRVLR 87
           C FC + G PILPLRYA+    +G+A A        EK   +     P     YTLR+LR
Sbjct: 13  CQFCNKQGLPILPLRYAVARKGMGDAPAVTAPFVVAEKEQKKEDFSLPDDIASYTLRLLR 72

Query: 88  KGYLHVYLGVTGHWQCYVVTDDGY 111
           +GYL+VY  +   W  YVVT  GY
Sbjct: 73  EGYLYVYDELRKEWSAYVVTSGGY 96